Wall clock time and date at job start Tue Mar 31 2020 14:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36008 * 116.99832 * 2 1 4 4 C 1.38115 * 119.99768 * 0.02562 * 3 2 1 5 5 C 1.39795 * 119.84383 * 180.02562 * 4 3 2 6 6 C 1.47475 * 120.07544 * 179.97438 * 5 4 3 7 7 O 1.21504 * 119.99835 * 186.60362 * 6 5 4 8 8 O 1.34747 * 119.99973 * 6.60547 * 6 5 4 9 9 C 1.45203 * 117.00028 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46675 * 30.00238 * 9 8 6 11 11 C 1.53001 * 109.47022 * 270.00045 * 9 8 6 12 12 C 1.50701 * 109.46829 * 149.99879 * 9 8 6 13 13 H 1.07995 * 120.00394 * 0.02562 * 12 9 8 14 14 C 1.37882 * 119.99611 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99947 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00006 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47049 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47197 * 119.99912 * 16 14 12 19 19 H 1.48503 * 109.46948 * 240.00008 * 16 14 12 20 20 C 1.39757 * 119.84680 * 0.02562 * 5 4 3 21 21 N 1.48024 * 120.00006 * 179.97438 * 20 5 4 22 22 O 1.21801 * 119.99934 * 231.22215 * 21 20 5 23 23 O 1.21803 * 119.99876 * 51.22869 * 21 20 5 24 24 C 1.37772 * 120.00035 * 359.97438 * 20 5 4 25 25 C 1.38855 * 120.15239 * 359.72931 * 24 20 5 26 26 O 1.35786 * 119.92345 * 180.27619 * 25 24 20 27 27 C 1.42905 * 116.99751 * 0.27386 * 26 25 24 28 28 H 1.09005 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47200 * 60.00291 * 1 2 3 30 30 H 1.08999 * 109.47459 * 299.99729 * 1 2 3 31 31 H 1.07998 * 120.07843 * 359.97438 * 4 3 2 32 32 H 1.08994 * 109.46900 * 299.99788 * 11 9 8 33 33 H 1.08997 * 109.46734 * 59.99960 * 11 9 8 34 34 H 1.08999 * 109.46567 * 179.97438 * 11 9 8 35 35 H 0.96995 * 120.00013 * 180.02562 * 15 14 12 36 36 H 1.08000 * 119.91893 * 180.02562 * 24 20 5 37 37 H 1.09001 * 109.46593 * 180.02562 * 27 26 25 38 38 H 1.08992 * 109.47085 * 300.00024 * 27 26 25 39 39 H 1.09000 * 109.47009 * 60.00378 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2941 2.3701 0.0005 5 6 1.9321 3.6140 0.0000 6 6 1.1338 4.8540 0.0000 7 8 1.6838 5.9306 -0.1215 8 8 -0.2056 4.7931 0.1347 9 6 -0.9270 6.0532 0.1265 10 1 -0.3898 6.7753 -0.4884 11 6 -1.0402 6.5853 1.5566 12 6 -2.3067 5.8384 -0.4404 13 1 -2.6111 4.8534 -0.7619 14 6 -3.1804 6.8996 -0.5485 15 7 -2.8095 8.0992 -0.1574 16 14 -4.8908 6.6333 -1.2505 17 1 -5.0596 5.2034 -1.6141 18 1 -5.9068 7.0096 -0.2350 19 1 -5.0655 7.4754 -2.4612 20 6 3.3281 3.6797 -0.0016 21 7 4.0071 4.9950 -0.0028 22 8 4.8726 5.2329 -0.8262 23 8 3.7005 5.8394 0.8197 24 6 4.0723 2.5203 -0.0022 25 6 3.4386 1.2848 0.0046 26 8 4.1767 0.1450 0.0097 27 6 5.5981 0.2926 0.0139 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 0.2155 2.3150 0.0005 32 1 -1.5773 5.8632 2.1714 33 1 -0.0423 6.7406 1.9665 34 1 -1.5814 7.5315 1.5503 35 1 -3.4242 8.8457 -0.2332 36 1 5.1510 2.5726 -0.0030 37 1 6.0655 -0.6921 0.0173 38 1 5.9092 0.8390 -0.8764 39 1 5.9035 0.8433 0.9035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:50 Heat of formation + Delta-G solvation = -120.453795 kcal Electronic energy + Delta-G solvation = -28158.967699 eV Core-core repulsion = 23844.246418 eV Total energy + Delta-G solvation = -4314.721281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.08248 -41.00834 -39.64863 -39.03821 -37.28899 -36.23453 -35.75377 -33.38718 -31.61758 -31.38366 -29.56044 -28.30167 -27.70964 -26.23605 -25.38469 -23.91649 -22.67790 -21.71981 -20.24986 -19.57027 -18.58282 -18.48132 -17.93146 -17.37534 -16.79238 -16.62332 -16.52426 -16.29895 -15.72736 -15.56177 -15.23316 -15.11273 -14.69991 -14.19574 -13.74318 -13.24736 -13.10508 -12.88520 -12.34857 -12.23974 -12.09330 -11.88051 -11.67878 -11.64504 -11.30776 -11.27023 -11.16465 -10.97224 -10.87502 -10.73639 -10.44377 -10.34825 -9.90375 -9.68053 -9.54426 -8.99907 -8.59511 -8.55902 -6.25256 -4.33519 -0.06679 0.35095 1.12656 1.46622 2.49422 2.57747 2.67767 3.09779 3.18713 3.26561 3.30368 3.33673 4.00191 4.22695 4.24763 4.33902 4.59385 4.69161 4.69834 4.89244 4.91836 4.94333 4.96208 5.07395 5.08362 5.26706 5.41051 5.60939 5.73531 6.38905 6.52317 6.56819 6.81236 6.86331 6.87405 7.00336 7.48443 7.63989 7.79586 7.89428 8.03511 8.37286 8.74245 9.31912 10.82130 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.003927 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.710217 B = 7129.090938 C = 8722.878030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.295 6.295 3 C 0.132 3.868 4 C -0.115 4.115 5 C -0.052 4.052 6 C 0.485 3.515 7 O -0.483 6.483 8 O -0.346 6.346 9 C 0.217 3.783 10 H 0.050 0.950 11 C -0.156 4.156 12 C -0.525 4.525 13 H 0.069 0.931 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.913 3.087 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.019 3.981 21 N 0.023 4.977 22 O -0.176 6.176 23 O -0.082 6.082 24 C -0.137 4.137 25 C 0.132 3.868 26 O -0.290 6.290 27 C 0.017 3.983 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.176 0.824 32 H 0.037 0.963 33 H 0.021 0.979 34 H 0.101 0.899 35 H 0.267 0.733 36 H 0.162 0.838 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.607 -18.087 1.505 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.207 6.207 3 C 0.084 3.916 4 C -0.134 4.134 5 C -0.055 4.055 6 C 0.326 3.674 7 O -0.372 6.372 8 O -0.262 6.262 9 C 0.165 3.835 10 H 0.068 0.932 11 C -0.214 4.214 12 C -0.562 4.562 13 H 0.087 0.913 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.740 3.260 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.063 4.063 21 N 0.552 4.448 22 O -0.384 6.384 23 O -0.317 6.317 24 C -0.157 4.157 25 C 0.085 3.915 26 O -0.203 6.203 27 C -0.077 4.077 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.193 0.807 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.179 0.821 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.379 -18.668 1.385 21.906 hybrid contribution -0.703 0.718 -0.336 1.060 sum 10.676 -17.950 1.049 20.911 Atomic orbital electron populations 1.23342 0.76868 1.04970 1.02737 1.86212 1.22395 1.24339 1.87769 1.18283 0.88936 0.85916 0.98419 1.21503 1.02250 0.88601 1.01036 1.18910 0.89576 0.94120 1.02871 1.20527 0.83989 0.87444 0.75397 1.90965 1.72355 1.29829 1.44087 1.86512 1.16327 1.42508 1.80871 1.20796 0.90092 0.77232 0.95351 0.93222 1.22171 0.99015 1.03630 0.96545 1.21003 0.96344 0.96178 1.42722 0.91269 1.24892 0.99179 0.94664 0.95166 1.69906 1.36337 0.99840 1.46147 0.86206 0.82669 0.78457 0.78702 1.19528 1.20623 1.20677 1.20528 0.91154 0.84131 1.10521 1.43144 0.99758 1.01817 1.00063 1.94508 1.25395 1.84769 1.33769 1.94621 1.65706 1.39478 1.31925 1.20494 1.01444 0.88644 1.05132 1.18005 0.88410 0.85412 0.99713 1.86209 1.19486 1.26619 1.87978 1.23282 0.77601 1.04870 1.01983 0.87321 0.91521 0.91486 0.80672 0.94398 0.95989 0.88041 0.92274 0.82078 0.87234 0.91864 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.29 -3.18 10.28 -34.43 -0.35 -3.53 16 3 C 0.13 1.58 6.69 -39.19 -0.26 1.31 16 4 C -0.11 -1.54 8.60 -39.04 -0.34 -1.88 16 5 C -0.05 -0.88 5.87 -104.98 -0.62 -1.50 16 6 C 0.48 10.48 7.73 34.49 0.27 10.75 16 7 O -0.48 -11.90 12.24 -27.45 -0.34 -12.23 16 8 O -0.35 -7.96 9.13 -40.62 -0.37 -8.33 16 9 C 0.22 5.73 2.56 -27.88 -0.07 5.66 16 10 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 11 C -0.16 -3.91 9.33 37.16 0.35 -3.57 16 12 C -0.52 -14.28 8.90 -34.44 -0.31 -14.58 16 13 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 15 N -0.88 -24.82 11.32 55.43 0.63 -24.19 16 16 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.02 0.30 6.31 -79.55 -0.50 -0.20 16 21 N 0.02 0.43 3.58 34.16 0.12 0.55 16 22 O -0.18 -3.24 19.14 -29.46 -0.56 -3.80 16 23 O -0.08 -1.71 16.11 -37.24 -0.60 -2.31 16 24 C -0.14 -1.64 8.80 -39.52 -0.35 -1.99 16 25 C 0.13 1.51 6.71 -38.92 -0.26 1.25 16 26 O -0.29 -2.88 10.26 -33.73 -0.35 -3.22 16 27 C 0.02 0.10 9.81 101.05 0.99 1.09 16 28 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.49 7.66 -51.93 -0.40 0.10 16 30 H 0.07 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.18 2.17 5.85 -52.49 -0.31 1.86 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.16 1.50 6.27 -52.49 -0.33 1.17 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.32 7.64 -51.93 -0.40 -0.08 16 39 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -33.21 344.00 -6.01 -39.22 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.15 Total: -1.92 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.20 Total: -0.93 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.75 Total: -23.64 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -2.57 Total: -33.43 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.21 -6.01 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.232 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds