Wall clock time and date at job start Tue Mar 31 2020 14:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36008 * 116.99832 * 2 1 4 4 C 1.38115 * 119.99768 * 0.02562 * 3 2 1 5 5 C 1.39795 * 119.84383 * 180.02562 * 4 3 2 6 6 C 1.47475 * 120.07544 * 179.97438 * 5 4 3 7 7 O 1.21504 * 119.99835 * 186.60362 * 6 5 4 8 8 O 1.34747 * 119.99973 * 6.60547 * 6 5 4 9 9 C 1.45203 * 117.00028 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46675 * 30.00238 * 9 8 6 11 11 C 1.53001 * 109.47022 * 270.00045 * 9 8 6 12 12 C 1.50701 * 109.46829 * 149.99879 * 9 8 6 13 13 H 1.07995 * 120.00394 * 0.02562 * 12 9 8 14 14 C 1.37882 * 119.99611 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99947 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00006 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47049 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47197 * 119.99912 * 16 14 12 19 19 H 1.48503 * 109.46948 * 240.00008 * 16 14 12 20 20 C 1.39757 * 119.84680 * 0.02562 * 5 4 3 21 21 N 1.48024 * 120.00006 * 179.97438 * 20 5 4 22 22 O 1.21801 * 119.99934 * 231.22215 * 21 20 5 23 23 O 1.21803 * 119.99876 * 51.22869 * 21 20 5 24 24 C 1.37772 * 120.00035 * 359.97438 * 20 5 4 25 25 C 1.38855 * 120.15239 * 359.72931 * 24 20 5 26 26 O 1.35786 * 119.92345 * 180.27619 * 25 24 20 27 27 C 1.42905 * 116.99751 * 0.27386 * 26 25 24 28 28 H 1.09005 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47200 * 60.00291 * 1 2 3 30 30 H 1.08999 * 109.47459 * 299.99729 * 1 2 3 31 31 H 1.07998 * 120.07843 * 359.97438 * 4 3 2 32 32 H 1.08994 * 109.46900 * 299.99788 * 11 9 8 33 33 H 1.08997 * 109.46734 * 59.99960 * 11 9 8 34 34 H 1.08999 * 109.46567 * 179.97438 * 11 9 8 35 35 H 0.96995 * 120.00013 * 180.02562 * 15 14 12 36 36 H 1.08000 * 119.91893 * 180.02562 * 24 20 5 37 37 H 1.09001 * 109.46593 * 180.02562 * 27 26 25 38 38 H 1.08992 * 109.47085 * 300.00024 * 27 26 25 39 39 H 1.09000 * 109.47009 * 60.00378 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2941 2.3701 0.0005 5 6 1.9321 3.6140 0.0000 6 6 1.1338 4.8540 0.0000 7 8 1.6838 5.9306 -0.1215 8 8 -0.2056 4.7931 0.1347 9 6 -0.9270 6.0532 0.1265 10 1 -0.3898 6.7753 -0.4884 11 6 -1.0402 6.5853 1.5566 12 6 -2.3067 5.8384 -0.4404 13 1 -2.6111 4.8534 -0.7619 14 6 -3.1804 6.8996 -0.5485 15 7 -2.8095 8.0992 -0.1574 16 14 -4.8908 6.6333 -1.2505 17 1 -5.0596 5.2034 -1.6141 18 1 -5.9068 7.0096 -0.2350 19 1 -5.0655 7.4754 -2.4612 20 6 3.3281 3.6797 -0.0016 21 7 4.0071 4.9950 -0.0028 22 8 4.8726 5.2329 -0.8262 23 8 3.7005 5.8394 0.8197 24 6 4.0723 2.5203 -0.0022 25 6 3.4386 1.2848 0.0046 26 8 4.1767 0.1450 0.0097 27 6 5.5981 0.2926 0.0139 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 0.2155 2.3150 0.0005 32 1 -1.5773 5.8632 2.1714 33 1 -0.0423 6.7406 1.9665 34 1 -1.5814 7.5315 1.5503 35 1 -3.4242 8.8457 -0.2332 36 1 5.1510 2.5726 -0.0030 37 1 6.0655 -0.6921 0.0173 38 1 5.9092 0.8390 -0.8764 39 1 5.9035 0.8433 0.9035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:49 Heat of formation + Delta-G solvation = -140.291694 kcal Electronic energy + Delta-G solvation = -28159.827934 eV Core-core repulsion = 23844.246418 eV Total energy + Delta-G solvation = -4315.581517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.42703 -42.08640 -41.29261 -39.84766 -38.46515 -37.75447 -37.45099 -35.40804 -32.81499 -32.48824 -31.47761 -29.12472 -28.30065 -27.57588 -27.42458 -25.24780 -23.84743 -23.19492 -21.94786 -20.78362 -19.88226 -19.78739 -19.10549 -18.87558 -18.40158 -18.01231 -17.51635 -17.42953 -17.11391 -16.97034 -16.39614 -16.39182 -16.00481 -15.30316 -14.83029 -14.73641 -14.42148 -14.12189 -13.88656 -13.78742 -13.28267 -13.08898 -12.89205 -12.84954 -12.80302 -12.61541 -12.52063 -12.44046 -12.32544 -12.30598 -12.24018 -12.14875 -11.69015 -11.60418 -11.05236 -10.64932 -10.58620 -9.52980 -8.30985 -6.49127 -1.34992 -0.72277 -0.22443 0.18042 1.15542 1.39670 1.43144 1.51394 1.60092 1.81580 1.88141 1.97608 2.36546 2.93222 3.00250 3.20067 3.38023 3.42003 3.73474 3.98713 4.05344 4.22896 4.31701 4.33117 4.36995 4.43445 4.47463 4.69153 4.74952 4.76368 4.77438 4.79170 5.02308 5.13335 5.42304 5.54668 5.63760 5.79889 5.95623 6.03873 6.38134 6.49417 6.70186 7.21898 8.77334 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.003927 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.710217 B = 7129.090938 C = 8722.878030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.295 6.295 3 C 0.141 3.859 4 C -0.104 4.104 5 C -0.080 4.080 6 C 0.481 3.519 7 O -0.522 6.522 8 O -0.344 6.344 9 C 0.220 3.780 10 H 0.006 0.994 11 C -0.143 4.143 12 C -0.547 4.547 13 H 0.075 0.925 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.987 3.013 17 H -0.258 1.258 18 H -0.272 1.272 19 H -0.279 1.279 20 C 0.007 3.993 21 N 0.025 4.975 22 O -0.151 6.151 23 O -0.152 6.152 24 C -0.122 4.122 25 C 0.153 3.847 26 O -0.293 6.293 27 C 0.002 3.998 28 H 0.137 0.863 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.184 0.816 32 H 0.051 0.949 33 H 0.021 0.979 34 H 0.083 0.917 35 H 0.271 0.729 36 H 0.193 0.807 37 H 0.136 0.864 38 H 0.075 0.925 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.689 -21.765 0.960 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.207 6.207 3 C 0.093 3.907 4 C -0.123 4.123 5 C -0.082 4.082 6 C 0.325 3.675 7 O -0.413 6.413 8 O -0.260 6.260 9 C 0.167 3.833 10 H 0.024 0.976 11 C -0.201 4.201 12 C -0.584 4.584 13 H 0.093 0.907 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.810 3.190 17 H -0.181 1.181 18 H -0.197 1.197 19 H -0.205 1.205 20 C -0.075 4.075 21 N 0.550 4.450 22 O -0.371 6.371 23 O -0.372 6.372 24 C -0.141 4.141 25 C 0.104 3.896 26 O -0.205 6.205 27 C -0.091 4.091 28 H 0.155 0.845 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.201 0.799 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.210 0.790 37 H 0.154 0.846 38 H 0.093 0.907 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.415 -22.331 0.954 25.097 hybrid contribution -0.532 1.601 -0.258 1.706 sum 10.883 -20.730 0.696 23.424 Atomic orbital electron populations 1.23670 0.75135 1.07029 1.03117 1.86239 1.24133 1.23251 1.87099 1.18288 0.89359 0.85829 0.97223 1.21477 1.02708 0.87781 1.00344 1.18599 0.89488 0.92942 1.07213 1.21333 0.83339 0.88937 0.73919 1.90946 1.72603 1.31861 1.45912 1.86483 1.17539 1.40534 1.81411 1.20492 0.89971 0.77747 0.95063 0.97618 1.21997 0.98823 1.02974 0.96285 1.21295 0.96729 0.96787 1.43580 0.90652 1.25892 1.03447 0.94091 0.95055 1.70041 1.37960 1.00792 1.46737 0.85078 0.77113 0.78974 0.77885 1.18129 1.19690 1.20456 1.20619 0.90862 0.83378 1.12665 1.43525 0.99426 1.02716 0.99371 1.94446 1.24919 1.85025 1.32667 1.94635 1.67552 1.41334 1.33634 1.20741 1.02657 0.87193 1.03533 1.18027 0.88488 0.85678 0.97395 1.86245 1.21726 1.25550 1.86998 1.23720 0.75120 1.07113 1.03188 0.84517 0.91212 0.91056 0.79913 0.93023 0.96035 0.89885 0.91935 0.79042 0.84632 0.90655 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.30 -5.42 10.28 -79.62 -0.82 -6.24 16 3 C 0.14 3.01 6.69 22.52 0.15 3.17 16 4 C -0.10 -2.69 8.60 22.62 0.19 -2.49 16 5 C -0.08 -2.74 5.87 -20.10 -0.12 -2.86 16 6 C 0.48 21.87 7.73 70.26 0.54 22.41 16 7 O -0.52 -27.58 12.24 27.64 0.34 -27.24 16 8 O -0.34 -16.47 9.13 -56.58 -0.52 -16.98 16 9 C 0.22 12.18 2.56 29.85 0.08 12.25 16 10 H 0.01 0.38 7.16 -2.39 -0.02 0.36 16 11 C -0.14 -7.50 9.33 71.98 0.67 -6.83 16 12 C -0.55 -30.32 8.90 25.60 0.23 -30.09 16 13 H 0.08 3.98 7.81 -2.91 -0.02 3.96 16 14 C 0.02 0.81 5.30 84.66 0.45 1.26 16 15 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 16 Si 0.99 41.88 29.54 68.60 2.03 43.90 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 20 C 0.01 0.22 6.31 36.63 0.23 0.45 16 21 N 0.02 0.96 3.58 -45.85 -0.16 0.79 16 22 O -0.15 -5.54 19.14 18.89 0.36 -5.18 16 23 O -0.15 -6.77 16.11 26.32 0.42 -6.35 16 24 C -0.12 -2.61 8.80 22.31 0.20 -2.41 16 25 C 0.15 3.00 6.71 22.70 0.15 3.15 16 26 O -0.29 -4.59 10.26 -77.13 -0.79 -5.38 16 27 C 0.00 0.01 9.81 113.37 1.11 1.13 16 28 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.07 0.86 7.66 -2.38 -0.02 0.84 16 30 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 31 H 0.18 4.35 5.85 -2.91 -0.02 4.34 16 32 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 4.66 6.07 -2.39 -0.01 4.65 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.19 2.85 6.27 -2.91 -0.02 2.83 16 37 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.07 0.42 7.64 -2.39 -0.02 0.40 16 39 H 0.07 0.39 7.66 -2.39 -0.02 0.38 16 Total: -1.00 -76.00 344.00 7.21 -68.79 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.11 Total: 6.16 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.00 Total: 0.30 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.08 Total: -51.77 kcal Atomic # 8 Polarization: -66.38 SS G_CDS: -1.00 Total: -67.38 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -76.00 7.21 -68.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.498 kcal (2) G-P(sol) polarization free energy of solvation -76.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds