Wall clock time and date at job start Tue Mar 31 2020 14:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00276 * 2 1 4 4 C 1.38661 * 120.02475 * 0.31535 * 3 2 1 5 5 C 1.38612 * 119.88936 * 180.23291 * 4 3 2 6 6 O 1.35897 * 120.02808 * 179.74826 * 5 4 3 7 7 C 1.42894 * 116.99997 * 179.72545 * 6 5 4 8 8 C 1.50700 * 109.47318 * 179.97438 * 7 6 5 9 9 O 1.20821 * 119.99635 * 0.02562 * 8 7 6 10 10 O 1.34235 * 120.00318 * 179.97438 * 8 7 6 11 11 C 1.45194 * 116.99927 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47239 * 330.00128 * 11 10 8 13 13 C 1.52997 * 109.47339 * 90.00371 * 11 10 8 14 14 C 1.50708 * 109.47032 * 210.00472 * 11 10 8 15 15 H 1.08000 * 119.99723 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99930 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00195 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99968 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46680 * 60.00159 * 18 16 14 20 20 H 1.48492 * 109.47298 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46944 * 300.00675 * 18 16 14 22 22 C 1.38802 * 119.94327 * 359.47481 * 5 4 3 23 23 C 1.38150 * 120.05537 * 0.25425 * 22 5 4 24 24 C 1.38196 * 120.11098 * 359.97438 * 23 22 5 25 25 N 1.47998 * 119.97419 * 180.02562 * 24 23 22 26 26 O 1.21795 * 120.00202 * 359.97438 * 25 24 23 27 27 O 1.21811 * 120.00123 * 180.02562 * 25 24 23 28 28 H 1.09000 * 109.46943 * 60.00240 * 1 2 3 29 29 H 1.08996 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46910 * 300.00339 * 1 2 3 31 31 H 1.08000 * 120.05788 * 0.02562 * 4 3 2 32 32 H 1.09005 * 109.47216 * 59.99595 * 7 6 5 33 33 H 1.09002 * 109.47582 * 300.00103 * 7 6 5 34 34 H 1.09002 * 109.47153 * 59.99705 * 13 11 10 35 35 H 1.09001 * 109.46832 * 299.99896 * 13 11 10 36 36 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 37 37 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 38 38 H 1.08002 * 119.97217 * 180.27795 * 22 5 4 39 39 H 1.07997 * 119.94644 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3741 0.0066 5 6 1.9236 3.6076 0.0017 6 8 1.1867 4.7495 0.0030 7 6 1.9048 5.9849 0.0038 8 6 0.9288 7.1332 0.0045 9 8 -0.2596 6.9158 0.0049 10 8 1.3799 8.3975 0.0059 11 6 0.3830 9.4530 0.0071 12 1 -0.5136 9.1066 -0.5070 13 6 0.0329 9.8223 1.4500 14 6 0.9325 10.6639 -0.7021 15 1 1.9313 10.6424 -1.1123 16 6 0.1602 11.7991 -0.8273 17 7 -1.0559 11.8255 -0.3273 18 14 0.8416 13.3003 -1.7058 19 1 1.1823 12.9420 -3.1060 20 1 -0.1780 14.3798 -1.7047 21 1 2.0626 13.7724 -1.0045 22 6 3.3100 3.6756 0.0012 23 6 4.0596 2.5152 0.0003 24 6 3.4316 1.2841 0.0004 25 7 4.2376 0.0429 0.0000 26 8 5.4539 0.1065 -0.0009 27 8 3.6846 -1.0425 -0.0003 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2128 2.3192 0.0122 32 1 2.5314 6.0416 -0.8864 33 1 2.5320 6.0401 0.8936 34 1 0.9295 10.1687 1.9641 35 1 -0.3646 8.9465 1.9629 36 1 -0.7152 10.6151 1.4509 37 1 -1.5992 12.6244 -0.4150 38 1 3.8031 4.6365 0.0019 39 1 5.1382 2.5701 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:04 Heat of formation + Delta-G solvation = -132.287401 kcal Electronic energy + Delta-G solvation = -26570.921328 eV Core-core repulsion = 22255.686904 eV Total energy + Delta-G solvation = -4315.234424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30445 -41.09631 -40.08707 -39.28513 -37.33325 -36.47733 -35.89772 -33.45124 -32.00606 -31.10221 -30.11463 -28.71999 -28.01462 -26.11475 -25.46399 -23.38759 -22.79435 -21.82298 -20.02327 -19.86324 -18.98615 -18.73103 -17.72828 -17.64281 -17.04682 -16.86960 -16.77730 -16.45891 -16.25708 -15.73932 -15.14132 -14.95896 -14.89334 -14.33240 -13.81119 -13.68143 -13.34681 -13.02756 -12.48088 -12.33333 -12.20205 -11.95006 -11.81601 -11.57916 -11.45545 -11.33758 -11.19243 -11.17213 -11.14281 -10.99004 -10.55126 -10.41289 -9.95094 -9.76160 -9.44426 -9.11520 -9.10174 -8.63137 -6.31843 -4.40178 -0.27148 0.50455 1.16421 1.31015 2.01212 2.46613 2.58278 2.81362 3.17585 3.21911 3.23847 3.52455 3.87276 4.09606 4.20344 4.32010 4.35038 4.53174 4.65761 4.68588 4.76249 4.82529 5.00510 5.01412 5.06844 5.26822 5.28292 5.46254 5.58399 6.20533 6.42565 6.45705 6.60480 6.71349 6.71829 6.91753 7.41719 7.54739 7.63057 7.73726 7.95511 8.34233 8.68204 9.25772 10.75436 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.002151 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.629925 B =13014.065896 C =13700.302284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.278 6.278 3 C 0.235 3.765 4 C -0.250 4.250 5 C 0.230 3.770 6 O -0.276 6.276 7 C 0.058 3.942 8 C 0.454 3.546 9 O -0.497 6.497 10 O -0.349 6.349 11 C 0.218 3.782 12 H 0.049 0.951 13 C -0.157 4.157 14 C -0.526 4.526 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.915 3.085 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.246 4.246 23 C 0.024 3.976 24 C -0.123 4.123 25 N 0.045 4.955 26 O -0.187 6.187 27 O -0.147 6.147 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.039 0.961 35 H 0.017 0.983 36 H 0.102 0.898 37 H 0.269 0.731 38 H 0.158 0.842 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.985 -18.772 1.445 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.188 6.188 3 C 0.184 3.816 4 C -0.270 4.270 5 C 0.181 3.819 6 O -0.187 6.187 7 C -0.017 4.017 8 C 0.295 3.705 9 O -0.385 6.385 10 O -0.266 6.266 11 C 0.166 3.834 12 H 0.067 0.933 13 C -0.214 4.214 14 C -0.564 4.564 15 H 0.088 0.912 16 C -0.139 4.139 17 N -0.525 5.525 18 Si 0.741 3.259 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.265 4.265 23 C 0.005 3.995 24 C -0.209 4.209 25 N 0.560 4.440 26 O -0.395 6.395 27 O -0.366 6.366 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.176 0.824 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.942 -18.202 1.470 18.918 hybrid contribution 0.248 0.798 -0.382 0.919 sum 5.190 -17.404 1.089 18.194 Atomic orbital electron populations 1.23385 0.76678 1.05372 1.02439 1.86430 1.22752 1.23896 1.85685 1.18221 0.89068 0.85784 0.88481 1.20392 1.01909 0.88228 1.16469 1.18993 0.89817 0.86296 0.86769 1.86174 1.34665 1.11946 1.85889 1.22250 0.93604 0.80123 1.05754 1.22391 0.88068 0.85405 0.74641 1.90671 1.17653 1.85688 1.44455 1.86465 1.44707 1.13763 1.81688 1.20779 0.86455 0.81087 0.95058 0.93297 1.22192 1.01916 1.00989 0.96332 1.20952 1.02064 0.96298 1.37063 0.91195 1.24895 0.94737 0.98802 0.95470 1.69876 1.08624 1.29610 1.44389 0.86283 0.78641 0.80971 0.79962 1.19913 1.20944 1.19847 1.21298 0.92247 1.00023 1.12943 1.20674 1.02040 0.88193 0.88579 1.20353 0.88063 0.85869 1.26586 1.43206 1.01022 1.02312 0.97418 1.94518 0.95705 1.93957 1.55341 1.94578 1.74229 1.14953 1.52854 0.91528 0.86896 0.91548 0.82050 0.87100 0.87180 0.94213 0.96411 0.87977 0.92145 0.82443 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.28 -2.74 8.50 -41.57 -0.35 -3.09 16 3 C 0.23 2.40 6.67 -39.23 -0.26 2.14 16 4 C -0.25 -2.35 8.97 -39.29 -0.35 -2.70 16 5 C 0.23 2.29 6.68 -39.23 -0.26 2.03 16 6 O -0.28 -3.43 9.67 -39.37 -0.38 -3.81 16 7 C 0.06 0.68 5.33 36.01 0.19 0.88 16 8 C 0.45 8.37 8.01 36.01 0.29 8.66 16 9 O -0.50 -10.95 15.72 -25.47 -0.40 -11.35 16 10 O -0.35 -7.44 9.86 -39.27 -0.39 -7.83 16 11 C 0.22 5.49 2.56 -27.88 -0.07 5.42 16 12 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 13 C -0.16 -3.73 9.33 37.16 0.35 -3.39 16 14 C -0.53 -13.95 8.90 -34.44 -0.31 -14.25 16 15 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.19 11.32 55.43 0.63 -23.56 16 18 Si 0.91 20.14 29.54 -169.99 -5.02 15.12 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 C -0.25 -1.96 9.04 -39.41 -0.36 -2.32 16 23 C 0.02 0.21 9.54 -39.63 -0.38 -0.17 16 24 C -0.12 -1.35 6.87 -79.78 -0.55 -1.90 16 25 N 0.04 0.59 4.45 34.04 0.15 0.74 16 26 O -0.19 -2.52 18.44 -29.46 -0.54 -3.06 16 27 O -0.15 -2.10 17.23 -36.50 -0.63 -2.73 16 28 H 0.07 0.32 7.67 -51.93 -0.40 -0.08 16 29 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.31 7.65 -51.93 -0.40 -0.09 16 31 H 0.16 1.28 6.30 -52.49 -0.33 0.95 16 32 H 0.11 0.98 7.66 -51.93 -0.40 0.58 16 33 H 0.11 0.95 7.66 -51.93 -0.40 0.55 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 2.63 6.07 -51.93 -0.32 2.31 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.16 0.87 6.29 -52.49 -0.33 0.54 16 39 H 0.16 1.09 7.60 -52.49 -0.40 0.69 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -32.63 347.67 -6.66 -39.29 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.15 Total: -1.99 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.81 Total: -2.96 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.78 Total: -22.82 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -2.69 Total: -31.87 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.63 -6.66 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.002 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds