Wall clock time and date at job start Tue Mar 31 2020 14:26:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34771 * 120.00441 * 2 1
4 4 O 1.21603 * 119.99860 * 0.27651 * 3 2 1
5 5 C 1.47424 * 120.00120 * 180.02562 * 3 2 1
6 6 C 1.39745 * 120.20445 * 354.29582 * 5 3 2
7 7 C 1.37840 * 119.91853 * 179.76887 * 6 5 3
8 8 Cl 1.73595 * 119.84200 * 180.25762 * 7 6 5
9 9 C 1.38706 * 120.32384 * 0.51188 * 7 6 5
10 10 C 1.37960 * 120.41207 * 359.74519 * 9 7 6
11 11 C 1.38947 * 120.07197 * 359.97438 * 10 9 7
12 12 N 1.38930 * 120.15813 * 179.97438 * 11 10 9
13 13 C 1.46502 * 120.00073 * 5.51622 * 12 11 10
14 14 C 1.50701 * 109.46935 * 180.02562 * 13 12 11
15 15 O 1.21276 * 120.00345 * 359.97438 * 14 13 12
16 16 N 1.34782 * 119.99759 * 180.02562 * 14 13 12
17 17 C 1.46502 * 119.99728 * 179.97438 * 16 14 13
18 18 C 1.50705 * 109.46657 * 179.97438 * 17 16 14
19 19 H 1.08001 * 120.00342 * 359.97438 * 18 17 16
20 20 C 1.37879 * 119.99508 * 180.02562 * 18 17 16
21 21 N 1.31522 * 119.99569 * 180.02562 * 20 18 17
22 22 Si 1.86801 * 120.00360 * 359.97438 * 20 18 17
23 23 H 1.48505 * 109.46791 * 90.00206 * 22 20 18
24 24 H 1.48496 * 109.46999 * 209.99796 * 22 20 18
25 25 H 1.48501 * 109.46930 * 330.00304 * 22 20 18
26 26 H 1.08998 * 109.47373 * 179.97438 * 1 2 3
27 27 H 1.08999 * 109.46959 * 300.00248 * 1 2 3
28 28 H 1.09001 * 109.46979 * 59.99980 * 1 2 3
29 29 H 0.96997 * 119.99284 * 179.97438 * 2 1 3
30 30 H 1.08008 * 120.03930 * 0.02890 * 6 5 3
31 31 H 1.07996 * 119.79814 * 179.71955 * 9 7 6
32 32 H 1.07996 * 119.96473 * 179.97438 * 10 9 7
33 33 H 0.97001 * 120.00113 * 185.51419 * 12 11 10
34 34 H 1.08999 * 109.46810 * 299.99578 * 13 12 11
35 35 H 1.08995 * 109.47136 * 59.99924 * 13 12 11
36 36 H 0.96994 * 120.00204 * 359.97438 * 16 14 13
37 37 H 1.08991 * 109.47418 * 299.99833 * 17 16 14
38 38 H 1.09003 * 109.46825 * 60.00274 * 17 16 14
39 39 H 0.97002 * 119.99834 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1390 1.1671 0.0000
4 8 1.5310 2.2202 0.0051
5 6 3.6132 1.1670 -0.0006
6 6 4.3163 -0.0348 0.1189
7 6 5.6946 -0.0285 0.1129
8 17 6.5659 -1.5233 0.2547
9 6 6.3890 1.1668 -0.0006
10 6 5.7087 2.3617 -0.1140
11 6 4.3192 2.3743 -0.1156
12 7 3.6323 3.5765 -0.2292
13 6 4.3678 4.8207 -0.4687
14 6 3.3970 5.9704 -0.5502
15 8 2.2078 5.7703 -0.4214
16 7 3.8502 7.2210 -0.7673
17 6 2.9064 8.3386 -0.8470
18 6 3.6631 9.6185 -1.0933
19 1 4.7393 9.6011 -1.1812
20 6 2.9813 10.8117 -1.2054
21 7 3.6416 11.9285 -1.4208
22 14 1.1198 10.8418 -1.0527
23 1 0.7430 11.0461 0.3691
24 1 0.5737 11.9520 -1.8739
25 1 0.5629 9.5512 -1.5318
26 1 -0.3634 -1.0276 -0.0005
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 1.9499 -0.8401 0.0004
30 1 3.7802 -0.9679 0.2117
31 1 7.4690 1.1623 0.0002
32 1 6.2566 3.2882 -0.2016
33 1 2.6657 3.5922 -0.1499
34 1 5.0665 4.9930 0.3499
35 1 4.9185 4.7425 -1.4061
36 1 4.8013 7.3811 -0.8707
37 1 2.2074 8.1662 -1.6653
38 1 2.3560 8.4170 0.0906
39 1 3.1620 12.7680 -1.4993
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000759767437.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:26:05
Heat of formation + Delta-G solvation = -45.884974 kcal
Electronic energy + Delta-G solvation = -24169.046851 eV
Core-core repulsion = 20330.561032 eV
Total energy + Delta-G solvation = -3838.485818 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.75910 -39.23892 -38.60843 -36.81791 -35.60221 -34.64419 -34.31373 -32.44088
-31.79256 -30.18140 -28.40596 -27.28203 -26.03366 -24.01781 -22.39756 -21.61137
-21.00900 -19.98697 -18.65951 -17.89039 -16.91219 -16.59010 -16.15461 -15.68193
-15.66933 -15.62467 -15.33660 -14.97914 -14.52344 -14.27025 -13.99279 -13.70550
-13.58476 -13.30983 -13.03882 -12.81293 -12.69993 -12.55627 -12.35915 -12.20083
-11.89222 -11.68578 -11.22326 -11.07865 -10.80678 -10.12548 -10.04612 -10.00947
-9.55810 -9.54151 -9.42392 -9.32639 -8.82873 -8.28175 -7.62003 -6.25516
-4.28403 0.57747 1.11810 1.96679 2.60186 2.93104 3.02229 3.11967
3.24868 3.31899 3.40035 3.54756 3.94206 4.30197 4.33857 4.39760
4.79475 4.92154 4.95647 5.03795 5.09646 5.17862 5.25742 5.25962
5.28578 5.41896 5.53465 5.59527 5.80763 5.94117 6.07835 6.24317
6.71595 6.97392 7.00483 7.09045 7.18521 7.31187 7.69133 8.02862
8.15638 8.40821 8.66031 8.78523 9.33986 10.86220
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.017464 B = 0.002562 C = 0.002240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1602.935932 B =10925.399090 C =12495.818353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.733 5.733
3 C 0.567 3.433
4 O -0.530 6.530
5 C -0.224 4.224
6 C -0.021 4.021
7 C -0.114 4.114
8 Cl -0.080 7.080
9 C -0.027 4.027
10 C -0.202 4.202
11 C 0.289 3.711
12 N -0.700 5.700
13 C 0.089 3.911
14 C 0.493 3.507
15 O -0.544 6.544
16 N -0.699 5.699
17 C 0.220 3.780
18 C -0.545 4.545
19 H 0.081 0.919
20 C 0.078 3.922
21 N -0.891 5.891
22 Si 0.876 3.124
23 H -0.273 1.273
24 H -0.283 1.283
25 H -0.261 1.261
26 H 0.075 0.925
27 H 0.062 0.938
28 H 0.062 0.938
29 H 0.401 0.599
30 H 0.132 0.868
31 H 0.136 0.864
32 H 0.140 0.860
33 H 0.433 0.567
34 H 0.094 0.906
35 H 0.094 0.906
36 H 0.399 0.601
37 H 0.027 0.973
38 H 0.022 0.978
39 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.157 -28.816 3.020 29.271
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.384 5.384
3 C 0.356 3.644
4 O -0.408 6.408
5 C -0.233 4.233
6 C -0.041 4.041
7 C -0.143 4.143
8 Cl -0.052 7.052
9 C -0.047 4.047
10 C -0.225 4.225
11 C 0.175 3.825
12 N -0.338 5.338
13 C -0.039 4.039
14 C 0.276 3.724
15 O -0.422 6.422
16 N -0.348 5.348
17 C 0.098 3.902
18 C -0.583 4.583
19 H 0.099 0.901
20 C -0.126 4.126
21 N -0.528 5.528
22 Si 0.703 3.297
23 H -0.198 1.198
24 H -0.208 1.208
25 H -0.185 1.185
26 H 0.094 0.906
27 H 0.081 0.919
28 H 0.081 0.919
29 H 0.235 0.765
30 H 0.149 0.851
31 H 0.154 0.846
32 H 0.158 0.842
33 H 0.286 0.714
34 H 0.111 0.889
35 H 0.112 0.888
36 H 0.233 0.767
37 H 0.045 0.955
38 H 0.040 0.960
39 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 2.849 -27.848 3.056 28.160
hybrid contribution -0.375 -0.265 0.056 0.463
sum 2.473 -28.114 3.111 28.393
Atomic orbital electron populations
1.21571 0.79044 1.02228 1.02812 1.45593 1.07928 1.08362 1.76550
1.18068 0.86699 0.83817 0.75773 1.90561 1.69253 1.30414 1.50548
1.19069 0.92340 0.92463 1.19398 1.20796 0.92210 0.96747 0.94346
1.20325 0.91800 0.87386 1.14780 1.98349 1.76623 1.33198 1.96991
1.20948 1.00320 0.90053 0.93385 1.20704 0.91634 0.98954 1.11190
1.17849 0.91249 0.85337 0.88096 1.45645 1.12974 1.02280 1.72910
1.21302 0.95007 0.84526 1.03102 1.20303 0.89359 0.84524 0.78189
1.90712 1.16632 1.84182 1.50671 1.46102 1.11832 1.06581 1.70300
1.19544 0.89579 0.84140 0.96907 1.21063 0.95660 0.89704 1.51876
0.90139 1.24792 0.98778 0.95178 0.93826 1.69879 1.36239 0.98597
1.48079 0.86821 0.85429 0.78598 0.78883 1.19807 1.20835 1.18498
0.90597 0.91926 0.91912 0.76476 0.85072 0.84577 0.84205 0.71375
0.88864 0.88836 0.76738 0.95513 0.95971 0.92195
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.67 10.70 59.85 0.64 1.31 16
2 N -0.73 -6.34 5.66 -68.18 -0.39 -6.73 16
3 C 0.57 7.19 7.75 -12.52 -0.10 7.10 16
4 O -0.53 -9.02 13.64 5.28 0.07 -8.94 16
5 C -0.22 -2.55 5.89 -104.81 -0.62 -3.16 16
6 C -0.02 -0.18 9.29 -39.16 -0.36 -0.55 16
7 C -0.11 -0.99 6.31 -39.55 -0.25 -1.24 16
8 Cl -0.08 -0.64 28.94 -51.86 -1.50 -2.14 16
9 C -0.03 -0.23 9.81 -39.51 -0.39 -0.62 16
10 C -0.20 -1.93 9.30 -39.42 -0.37 -2.30 16
11 C 0.29 3.55 6.65 -83.60 -0.56 2.99 16
12 N -0.70 -10.34 5.56 -59.61 -0.33 -10.67 16
13 C 0.09 1.18 5.42 -5.19 -0.03 1.15 16
14 C 0.49 9.18 7.90 -10.98 -0.09 9.09 16
15 O -0.54 -12.55 15.67 5.56 0.09 -12.46 16
16 N -0.70 -13.58 5.55 -61.47 -0.34 -13.92 16
17 C 0.22 5.35 4.50 -5.19 -0.02 5.32 16
18 C -0.55 -14.71 9.83 -34.44 -0.34 -15.05 16
19 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16
20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16
21 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16
22 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16
23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
25 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16
26 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16
27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.40 2.18 6.89 -40.82 -0.28 1.90 16
30 H 0.13 0.77 6.44 -52.48 -0.34 0.43 16
31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16
32 H 0.14 1.08 6.72 -52.49 -0.35 0.73 16
33 H 0.43 7.77 3.94 -40.95 -0.16 7.61 16
34 H 0.09 0.98 7.73 -51.93 -0.40 0.58 16
35 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16
36 H 0.40 6.55 8.32 -40.82 -0.34 6.21 16
37 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16
38 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16
39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
LS Contribution 347.59 15.07 5.24 5.24
Total: -1.00 -34.78 347.59 -7.96 -42.74
By element:
Atomic # 1 Polarization: 13.78 SS G_CDS: -4.33 Total: 9.45 kcal
Atomic # 6 Polarization: 8.71 SS G_CDS: -2.57 Total: 6.14 kcal
Atomic # 7 Polarization: -56.47 SS G_CDS: -0.28 Total: -56.75 kcal
Atomic # 8 Polarization: -21.57 SS G_CDS: 0.16 Total: -21.41 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal
Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -34.78 -7.96 -42.74 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000759767437.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.147 kcal
(2) G-P(sol) polarization free energy of solvation -34.776 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.923 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds