Wall clock time and date at job start Tue Mar 31 2020 14:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46749 * 2 1 4 4 C 1.50698 * 109.47149 * 119.99561 * 2 1 3 5 5 H 1.08004 * 119.99586 * 120.00219 * 4 2 1 6 6 C 1.37874 * 120.00290 * 300.00279 * 4 2 1 7 7 N 1.31512 * 120.00130 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99992 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47202 * 59.99951 * 8 6 4 10 10 H 1.48499 * 109.47105 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46992 * 299.99605 * 8 6 4 12 12 N 1.46893 * 109.47207 * 239.99789 * 2 1 3 13 13 C 1.46901 * 111.00360 * 183.95085 * 12 2 1 14 14 C 1.46906 * 110.99932 * 59.99802 * 12 2 1 15 15 C 1.50703 * 109.47109 * 190.00029 * 14 12 2 16 16 C 1.35458 * 126.04971 * 90.02646 * 15 14 12 17 17 Cl 1.73604 * 126.14355 * 0.02562 * 16 15 14 18 18 N 1.34991 * 107.71662 * 179.97438 * 16 15 14 19 19 C 1.46492 * 126.03466 * 179.97438 * 18 16 15 20 20 N 1.40078 * 107.92344 * 0.02562 * 18 16 15 21 21 C 1.30832 * 108.24261 * 359.71824 * 20 18 16 22 22 C 1.50702 * 125.89459 * 180.25903 * 21 20 18 23 23 F 1.39901 * 109.46979 * 270.21320 * 22 21 20 24 24 F 1.39904 * 109.46903 * 30.21361 * 22 21 20 25 25 F 1.39894 * 109.47325 * 150.21180 * 22 21 20 26 26 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47053 * 300.00316 * 1 2 3 28 28 H 1.08993 * 109.47137 * 59.99977 * 1 2 3 29 29 H 0.96998 * 120.00479 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47046 * 296.04847 * 13 12 2 31 31 H 1.09008 * 109.46903 * 56.04730 * 13 12 2 32 32 H 1.08999 * 109.47457 * 176.04446 * 13 12 2 33 33 H 1.08992 * 109.47459 * 309.99948 * 14 12 2 34 34 H 1.09004 * 109.47040 * 70.00098 * 14 12 2 35 35 H 1.08995 * 109.47182 * 89.99877 * 19 18 16 36 36 H 1.09002 * 109.47174 * 210.00132 * 19 18 16 37 37 H 1.09004 * 109.47799 * 330.00038 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3226 -1.1194 4.0080 9 1 3.8076 -1.1187 4.0077 10 1 1.8280 -0.4190 5.2204 11 1 1.8281 -2.5196 4.0082 12 7 2.0197 -0.6925 -1.1993 13 6 3.4851 -0.7945 -1.1870 14 6 1.5486 -0.0264 -2.4210 15 6 1.8579 -0.8912 -3.6159 16 6 1.0494 -1.8419 -4.1425 17 17 -0.5270 -2.2813 -3.5630 18 7 1.6890 -2.3856 -5.1996 19 6 1.1760 -3.4535 -6.0613 20 7 2.9304 -1.7492 -5.3263 21 6 3.0282 -0.8503 -4.3807 22 6 4.2011 0.0681 -4.1525 23 9 5.1141 -0.5472 -3.2893 24 9 4.8252 0.3399 -5.3747 25 9 3.7528 1.2640 -3.5816 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7089 1.1615 3.4844 30 1 3.9192 0.2044 -1.2301 31 1 3.8070 -1.2915 -0.2718 32 1 3.8164 -1.3722 -2.0499 33 1 0.4722 0.1323 -2.3564 34 1 2.0518 0.9346 -2.5280 35 1 0.6244 -3.0156 -6.8932 36 1 2.0092 -4.0410 -6.4469 37 1 0.5126 -4.0984 -5.4850 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782152658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:42 Heat of formation + Delta-G solvation = -54.617131 kcal Electronic energy + Delta-G solvation = -26956.666362 eV Core-core repulsion = 22575.945148 eV Total energy + Delta-G solvation = -4380.721213 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.16641 -47.66883 -47.63315 -41.69029 -37.02186 -36.91493 -34.09513 -32.75887 -30.86669 -29.18578 -28.52608 -26.98220 -25.22486 -24.36477 -23.04350 -21.30874 -20.84701 -19.38143 -18.49717 -18.23573 -17.90141 -16.63944 -16.13692 -16.10628 -15.24519 -15.03124 -14.57234 -14.32673 -14.12835 -14.06798 -13.92105 -13.78526 -13.69807 -13.41589 -13.15751 -12.98727 -12.56208 -12.38184 -12.26112 -12.12232 -11.65303 -11.53473 -11.11059 -10.97867 -10.91171 -10.69143 -10.45469 -10.09037 -9.94653 -9.80534 -9.69418 -8.88559 -8.62630 -8.34609 -7.11326 -5.96535 -4.00415 1.19920 1.27446 2.02486 2.07062 2.81149 3.35560 3.39562 3.42796 3.57978 3.93049 4.38284 4.42344 4.45681 4.80525 4.92648 5.07087 5.09475 5.22116 5.32153 5.40394 5.84318 6.12003 6.23555 6.28929 6.37742 6.49525 6.87189 6.90104 6.99970 7.10304 7.20054 7.56593 7.75560 7.87412 8.24338 8.36670 8.63713 9.05467 9.64071 11.10223 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.004907 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.508514 B = 5704.522154 C = 6937.307970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.527 5.527 13 C 0.026 3.974 14 C 0.102 3.898 15 C -0.141 4.141 16 C 0.135 3.865 17 Cl 0.021 6.979 18 N -0.351 5.351 19 C 0.094 3.906 20 N -0.223 5.223 21 C -0.009 4.009 22 C 0.557 3.443 23 F -0.159 7.159 24 F -0.171 7.171 25 F -0.157 7.157 26 H 0.034 0.966 27 H 0.084 0.916 28 H 0.008 0.992 29 H 0.260 0.740 30 H 0.013 0.987 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -5.160 -17.747 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.108 3.892 3 H 0.018 0.982 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.252 5.252 13 C -0.122 4.122 14 C -0.027 4.027 15 C -0.154 4.154 16 C -0.017 4.017 17 Cl 0.049 6.951 18 N -0.137 5.137 19 C -0.046 4.046 20 N -0.049 5.049 21 C -0.175 4.175 22 C 0.501 3.499 23 F -0.140 7.140 24 F -0.152 7.152 25 F -0.139 7.139 26 H 0.054 0.946 27 H 0.103 0.897 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.030 -6.181 -18.597 19.598 hybrid contribution 0.216 0.620 1.520 1.656 sum 0.245 -5.561 -17.077 17.961 Atomic orbital electron populations 1.21845 0.97703 0.99640 0.99797 1.19247 0.92305 0.92088 0.85592 0.98238 1.21098 1.30925 1.12224 0.89679 0.91933 1.24902 0.95257 0.95076 0.98899 1.69877 1.36974 1.22993 1.23430 0.86608 0.79114 0.79723 0.82221 1.20373 1.21426 1.20314 1.62190 1.09427 1.52323 1.01285 1.22553 0.88670 0.98924 1.02052 1.20778 1.02146 0.93038 0.86710 1.19591 0.92234 1.02190 1.01356 1.21315 0.90693 0.97747 0.91994 1.98434 1.18478 1.91881 1.86322 1.48538 1.11830 1.30060 1.23292 1.22085 1.00868 0.87637 0.94025 1.77392 0.97996 1.08941 1.20589 1.21789 0.96510 1.00409 0.98792 1.16810 0.80448 0.78346 0.74304 1.93244 1.68293 1.82560 1.69953 1.93219 1.83808 1.94146 1.44028 1.93218 1.88832 1.47068 1.84734 0.94644 0.89692 0.97318 0.92996 0.96880 0.90367 0.93524 0.89092 0.93188 0.89760 0.88298 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.76 37.16 0.33 -2.82 16 2 C 0.21 5.33 2.06 -68.87 -0.14 5.19 16 3 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 4 C -0.50 -13.61 7.88 -34.44 -0.27 -13.88 16 5 H 0.06 1.70 6.41 -52.48 -0.34 1.37 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.53 -11.38 4.61 -237.73 -1.10 -12.48 16 13 C 0.03 0.55 7.59 60.07 0.46 1.00 16 14 C 0.10 1.90 4.81 -4.97 -0.02 1.87 16 15 C -0.14 -2.33 4.90 -105.00 -0.51 -2.85 16 16 C 0.14 1.96 7.45 -17.15 -0.13 1.83 16 17 Cl 0.02 0.27 28.34 -51.86 -1.47 -1.20 16 18 N -0.35 -4.46 4.01 -64.91 -0.26 -4.72 16 19 C 0.09 0.70 11.31 59.84 0.68 1.37 16 20 N -0.22 -3.31 12.51 33.67 0.42 -2.89 16 21 C -0.01 -0.14 5.73 -82.41 -0.47 -0.62 16 22 C 0.56 8.58 2.92 36.01 0.11 8.68 16 23 F -0.16 -2.53 14.09 2.25 0.03 -2.50 16 24 F -0.17 -2.45 17.25 2.25 0.04 -2.42 16 25 F -0.16 -2.50 14.31 2.25 0.03 -2.47 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 2.23 6.07 -51.92 -0.32 1.92 16 28 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.01 0.27 7.60 -51.93 -0.39 -0.13 16 31 H 0.08 1.73 6.10 -51.92 -0.32 1.41 16 32 H 0.05 0.89 4.41 -51.93 -0.23 0.66 16 33 H 0.09 1.67 5.59 -51.93 -0.29 1.38 16 34 H 0.05 0.94 5.74 -51.93 -0.30 0.64 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.58 7.81 -51.93 -0.41 0.17 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -29.74 322.83 -5.65 -35.39 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: -3.73 Total: -4.60 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.08 Total: 1.34 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.31 Total: -44.74 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.10 Total: -7.38 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.47 Total: -1.20 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.74 -5.65 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782152658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.229 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds