Wall clock time and date at job start Tue Mar 31 2020 14:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46749 * 2 1 4 4 C 1.50698 * 109.47149 * 119.99561 * 2 1 3 5 5 H 1.08004 * 119.99586 * 120.00219 * 4 2 1 6 6 C 1.37874 * 120.00290 * 300.00279 * 4 2 1 7 7 N 1.31512 * 120.00130 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99992 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47202 * 59.99951 * 8 6 4 10 10 H 1.48499 * 109.47105 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46992 * 299.99605 * 8 6 4 12 12 N 1.46893 * 109.47207 * 239.99789 * 2 1 3 13 13 C 1.46901 * 111.00360 * 183.95085 * 12 2 1 14 14 C 1.46906 * 110.99932 * 59.99802 * 12 2 1 15 15 C 1.50703 * 109.47109 * 190.00029 * 14 12 2 16 16 C 1.35458 * 126.04971 * 90.02646 * 15 14 12 17 17 Cl 1.73604 * 126.14355 * 0.02562 * 16 15 14 18 18 N 1.34991 * 107.71662 * 179.97438 * 16 15 14 19 19 C 1.46492 * 126.03466 * 179.97438 * 18 16 15 20 20 N 1.40078 * 107.92344 * 0.02562 * 18 16 15 21 21 C 1.30832 * 108.24261 * 359.71824 * 20 18 16 22 22 C 1.50702 * 125.89459 * 180.25903 * 21 20 18 23 23 F 1.39901 * 109.46979 * 270.21320 * 22 21 20 24 24 F 1.39904 * 109.46903 * 30.21361 * 22 21 20 25 25 F 1.39894 * 109.47325 * 150.21180 * 22 21 20 26 26 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47053 * 300.00316 * 1 2 3 28 28 H 1.08993 * 109.47137 * 59.99977 * 1 2 3 29 29 H 0.96998 * 120.00479 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47046 * 296.04847 * 13 12 2 31 31 H 1.09008 * 109.46903 * 56.04730 * 13 12 2 32 32 H 1.08999 * 109.47457 * 176.04446 * 13 12 2 33 33 H 1.08992 * 109.47459 * 309.99948 * 14 12 2 34 34 H 1.09004 * 109.47040 * 70.00098 * 14 12 2 35 35 H 1.08995 * 109.47182 * 89.99877 * 19 18 16 36 36 H 1.09002 * 109.47174 * 210.00132 * 19 18 16 37 37 H 1.09004 * 109.47799 * 330.00038 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3226 -1.1194 4.0080 9 1 3.8076 -1.1187 4.0077 10 1 1.8280 -0.4190 5.2204 11 1 1.8281 -2.5196 4.0082 12 7 2.0197 -0.6925 -1.1993 13 6 3.4851 -0.7945 -1.1870 14 6 1.5486 -0.0264 -2.4210 15 6 1.8579 -0.8912 -3.6159 16 6 1.0494 -1.8419 -4.1425 17 17 -0.5270 -2.2813 -3.5630 18 7 1.6890 -2.3856 -5.1996 19 6 1.1760 -3.4535 -6.0613 20 7 2.9304 -1.7492 -5.3263 21 6 3.0282 -0.8503 -4.3807 22 6 4.2011 0.0681 -4.1525 23 9 5.1141 -0.5472 -3.2893 24 9 4.8252 0.3399 -5.3747 25 9 3.7528 1.2640 -3.5816 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7089 1.1615 3.4844 30 1 3.9192 0.2044 -1.2301 31 1 3.8070 -1.2915 -0.2718 32 1 3.8164 -1.3722 -2.0499 33 1 0.4722 0.1323 -2.3564 34 1 2.0518 0.9346 -2.5280 35 1 0.6244 -3.0156 -6.8932 36 1 2.0092 -4.0410 -6.4469 37 1 0.5126 -4.0984 -5.4850 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782152658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:42 Heat of formation + Delta-G solvation = -73.327875 kcal Electronic energy + Delta-G solvation = -26957.477721 eV Core-core repulsion = 22575.945148 eV Total energy + Delta-G solvation = -4381.532572 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.38559 -48.88420 -48.85699 -42.81466 -38.72828 -38.01278 -35.34773 -34.49374 -32.26859 -30.91994 -29.63586 -28.48998 -26.82528 -25.94329 -24.56510 -22.47957 -22.15866 -21.14642 -19.71953 -19.45518 -19.08353 -18.30046 -17.55318 -17.25470 -16.90615 -16.38765 -15.89222 -15.74416 -15.59497 -15.36051 -15.28368 -15.08639 -15.03533 -14.78868 -14.34690 -14.09709 -13.89022 -13.79152 -13.65688 -13.19919 -13.16007 -12.92934 -12.84952 -12.69816 -12.56989 -12.37163 -12.09553 -12.00139 -11.84472 -11.57382 -10.84847 -10.72559 -10.47134 -9.82477 -8.88780 -8.05488 -6.16249 0.09448 0.18845 0.83132 0.95457 1.45863 1.46771 1.54286 1.73274 2.42851 2.46764 2.74488 3.16705 3.22803 3.44714 3.49755 3.81602 4.05348 4.21103 4.31673 4.52126 4.58033 4.60004 4.70154 4.78701 4.82397 5.03865 5.10595 5.13638 5.30769 5.36398 5.57924 5.77626 5.84246 5.88768 6.32179 6.41458 6.74806 6.96990 7.52062 9.00070 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.004907 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.508514 B = 5704.522154 C = 6937.307970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.218 3.782 3 H -0.036 1.036 4 C -0.516 4.516 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.529 5.529 13 C 0.036 3.964 14 C 0.109 3.891 15 C -0.167 4.167 16 C 0.141 3.859 17 Cl 0.035 6.965 18 N -0.336 5.336 19 C 0.079 3.921 20 N -0.228 5.228 21 C -0.019 4.019 22 C 0.558 3.442 23 F -0.164 7.164 24 F -0.164 7.164 25 F -0.163 7.163 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.007 0.993 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -6.739 -18.970 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 H -0.018 1.018 4 C -0.554 4.554 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.254 5.254 13 C -0.112 4.112 14 C -0.020 4.020 15 C -0.180 4.180 16 C -0.014 4.014 17 Cl 0.063 6.937 18 N -0.122 5.122 19 C -0.059 4.059 20 N -0.055 5.055 21 C -0.184 4.184 22 C 0.502 3.498 23 F -0.146 7.146 24 F -0.146 7.146 25 F -0.145 7.145 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.305 -7.781 -19.856 21.329 hybrid contribution 0.276 1.060 1.774 2.085 sum -0.029 -6.720 -18.083 19.291 Atomic orbital electron populations 1.21632 0.96845 0.99403 0.99698 1.19047 0.92915 0.90181 0.86711 1.01812 1.21363 1.30978 1.12199 0.90885 0.92439 1.25628 0.95442 0.95743 1.01614 1.70004 1.37774 1.24068 1.23972 0.85655 0.78606 0.78749 0.78850 1.20003 1.21038 1.19753 1.62128 1.09794 1.52095 1.01369 1.22453 0.88295 0.98621 1.01857 1.20654 1.01854 0.93233 0.86251 1.19355 0.93563 1.03582 1.01514 1.21325 0.90945 0.97055 0.92049 1.98443 1.17382 1.91660 1.86230 1.48962 1.10714 1.29779 1.22762 1.22630 1.02076 0.86870 0.94335 1.77358 0.99063 1.08804 1.20253 1.21719 0.96377 1.01015 0.99277 1.16817 0.80485 0.78185 0.74349 1.93223 1.68496 1.82631 1.70217 1.93226 1.83704 1.94098 1.43538 1.93203 1.88906 1.47459 1.84894 0.94732 0.92223 0.94950 0.93015 0.97465 0.92148 0.91718 0.89073 0.93711 0.87262 0.86590 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.76 71.98 0.63 -5.01 16 2 C 0.22 11.08 2.06 44.17 0.09 11.17 16 3 H -0.04 -2.03 8.14 -2.38 -0.02 -2.05 16 4 C -0.52 -28.35 7.88 25.60 0.20 -28.15 16 5 H 0.06 3.16 6.41 -2.91 -0.02 3.14 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 N -0.53 -22.89 4.61 -906.03 -4.18 -27.07 16 13 C 0.04 1.50 7.59 127.69 0.97 2.47 16 14 C 0.11 4.00 4.81 85.56 0.41 4.41 16 15 C -0.17 -5.33 4.90 -20.11 -0.10 -5.43 16 16 C 0.14 3.79 7.45 83.56 0.62 4.41 16 17 Cl 0.03 0.83 28.34 -2.72 -0.08 0.75 16 18 N -0.34 -7.63 4.01 -359.27 -1.44 -9.08 16 19 C 0.08 0.88 11.31 127.77 1.44 2.33 16 20 N -0.23 -6.30 12.51 -47.39 -0.59 -6.89 16 21 C -0.02 -0.58 5.73 43.10 0.25 -0.33 16 22 C 0.56 16.87 2.92 71.24 0.21 17.08 16 23 F -0.16 -5.16 14.09 44.97 0.63 -4.52 16 24 F -0.16 -4.58 17.25 44.97 0.78 -3.81 16 25 F -0.16 -5.21 14.31 44.97 0.64 -4.57 16 26 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 28 H 0.03 1.35 6.20 -2.39 -0.01 1.33 16 29 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.01 0.29 7.60 -2.39 -0.02 0.27 16 31 H 0.06 2.70 6.10 -2.38 -0.01 2.69 16 32 H 0.06 2.44 4.41 -2.39 -0.01 2.43 16 33 H 0.09 3.29 5.59 -2.39 -0.01 3.28 16 34 H 0.04 1.70 5.74 -2.38 -0.01 1.68 16 35 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 0.94 7.81 -2.39 -0.02 0.92 16 Total: -1.00 -63.47 322.83 4.34 -59.12 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: 1.14 Total: -1.60 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 5.18 Total: 4.19 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -5.97 Total: -95.43 kcal Atomic # 9 Polarization: -14.95 SS G_CDS: 2.05 Total: -12.90 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: 0.83 SS G_CDS: -0.08 Total: 0.75 kcal Total: -63.47 4.34 -59.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782152658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.205 kcal (2) G-P(sol) polarization free energy of solvation -63.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds