Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 120.00247 * 2 1 4 4 H 1.48499 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46901 * 299.99673 * 3 2 1 6 6 H 1.48502 * 109.47504 * 59.99438 * 3 2 1 7 7 C 1.39947 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99706 * 166.88264 * 7 2 1 9 9 C 1.41392 * 120.00034 * 346.87654 * 7 2 1 10 10 C 1.40737 * 120.25019 * 329.89089 * 9 7 2 11 11 C 1.37593 * 119.74704 * 180.32020 * 10 9 7 12 12 C 1.38657 * 120.24781 * 359.65323 * 11 10 9 13 13 C 1.38615 * 120.50215 * 0.02840 * 12 11 10 14 14 C 1.37638 * 120.24575 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.12350 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47469 * 265.00406 * 15 14 13 17 17 O 1.21298 * 119.99671 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00348 * 180.27685 * 16 15 14 19 19 C 1.40128 * 120.00302 * 175.17362 * 18 16 15 20 20 C 1.38844 * 120.04630 * 28.25369 * 19 18 16 21 21 C 1.38157 * 120.06267 * 179.97438 * 20 19 18 22 22 C 1.38274 * 120.20216 * 0.02562 * 21 20 19 23 23 C 1.38648 * 120.15864 * 0.02562 * 22 21 20 24 24 C 1.39078 * 120.05017 * 207.97885 * 19 18 16 25 25 O 1.36580 * 131.52605 * 0.67749 * 24 19 18 26 26 C 1.43993 * 105.53434 * 162.28440 * 25 24 19 27 27 O 1.36511 * 131.47273 * 180.02562 * 23 22 21 28 28 H 0.97008 * 119.99583 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.12158 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.87425 * 179.68378 * 11 10 9 31 31 H 1.08000 * 119.74227 * 180.02562 * 12 11 10 32 32 H 1.07995 * 119.87678 * 179.97438 * 13 12 11 33 33 H 1.09000 * 109.46922 * 145.00126 * 15 14 13 34 34 H 1.09004 * 109.47030 * 25.00608 * 15 14 13 35 35 H 0.97008 * 119.99480 * 355.17783 * 18 16 15 36 36 H 1.08000 * 119.96663 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.90289 * 179.97438 * 21 20 19 38 38 H 1.07992 * 119.91958 * 179.97438 * 22 21 20 39 39 H 1.09004 * 110.57420 * 268.29184 * 26 25 24 40 40 H 1.08997 * 110.70394 * 145.47301 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0668 -1.2243 -0.2117 9 6 1.3286 -2.4204 0.2791 10 6 0.2090 -2.4240 1.1319 11 6 -0.4403 -3.6068 1.4011 12 6 0.0003 -4.7911 0.8301 13 6 1.0978 -4.7984 -0.0165 14 6 1.7633 -3.6272 -0.2990 15 6 2.9566 -3.6384 -1.2194 16 6 4.2196 -3.7371 -0.4033 17 8 4.1569 -3.7924 0.8068 18 7 5.4190 -3.7578 -1.0175 19 6 6.5960 -3.7474 -0.2571 20 6 6.6021 -4.2877 1.0218 21 6 7.7625 -4.2781 1.7717 22 6 8.9214 -3.7307 1.2529 23 6 8.9249 -3.1878 -0.0229 24 6 7.7611 -3.2010 -0.7846 25 8 8.0201 -2.6108 -1.9888 26 6 9.2472 -1.8804 -1.8043 27 8 9.9173 -2.5985 -0.7519 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1362 -1.5025 1.5770 30 1 -1.2965 -3.6127 2.0592 31 1 -0.5158 -5.7148 1.0467 32 1 1.4325 -5.7266 -0.4554 33 1 2.9729 -2.7188 -1.8044 34 1 2.8898 -4.4947 -1.8905 35 1 5.4675 -3.7798 -1.9862 36 1 5.6991 -4.7166 1.4306 37 1 7.7642 -4.6987 2.7664 38 1 9.8257 -3.7252 1.8431 39 1 9.0403 -0.8555 -1.4961 40 1 9.8434 -1.8919 -2.7167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782488809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = -45.233858 kcal Electronic energy + Delta-G solvation = -26755.492062 eV Core-core repulsion = 22887.174577 eV Total energy + Delta-G solvation = -3868.317485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.20805 -39.92966 -37.86428 -37.05832 -36.35001 -34.26127 -33.60260 -31.87013 -29.93962 -29.56491 -29.34174 -26.75511 -25.90115 -25.02807 -23.21240 -22.71214 -20.96299 -20.65163 -19.48667 -18.22806 -18.13087 -17.56126 -17.15192 -16.41520 -16.16830 -15.70565 -15.43661 -14.83689 -14.56724 -14.51136 -14.22038 -13.69915 -13.63134 -13.41946 -13.15700 -13.02450 -12.84213 -12.58543 -12.18755 -11.85855 -11.66500 -11.58167 -11.33533 -11.16117 -11.03097 -10.98224 -10.68250 -10.40095 -10.22656 -9.50800 -9.40112 -9.21116 -9.20395 -8.15845 -7.92967 -7.35328 -7.27830 -6.72681 -4.37553 1.13664 1.22332 2.67752 2.73963 2.89412 3.06701 3.07421 3.12912 3.23691 3.33699 3.38384 3.73184 3.94447 4.57186 4.61805 4.66290 4.74095 4.99340 5.09956 5.29059 5.37764 5.40211 5.68323 5.73034 5.93592 5.96177 6.06368 6.23424 6.24585 6.34577 6.38576 6.47350 6.51297 6.68821 6.76141 7.09160 7.15753 7.25078 7.38254 7.58248 7.67857 7.88522 8.04353 8.09406 8.29239 8.55754 8.63845 8.90369 8.98431 10.22765 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.004068 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.230659 B = 6881.500708 C = 8243.827623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.460 4.460 8 H 0.073 0.927 9 C 0.131 3.869 10 C -0.152 4.152 11 C -0.107 4.107 12 C -0.235 4.235 13 C -0.081 4.081 14 C -0.182 4.182 15 C -0.068 4.068 16 C 0.516 3.484 17 O -0.497 6.497 18 N -0.681 5.681 19 C 0.190 3.810 20 C -0.126 4.126 21 C -0.088 4.088 22 C -0.127 4.127 23 C 0.048 3.952 24 C -0.014 4.014 25 O -0.310 6.310 26 C 0.216 3.784 27 O -0.312 6.312 28 H 0.279 0.721 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.166 0.834 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.468 -4.096 -3.227 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.490 4.490 8 H 0.091 0.909 9 C 0.129 3.871 10 C -0.172 4.172 11 C -0.126 4.126 12 C -0.254 4.254 13 C -0.100 4.100 14 C -0.183 4.183 15 C -0.108 4.108 16 C 0.306 3.694 17 O -0.369 6.369 18 N -0.326 5.326 19 C 0.093 3.907 20 C -0.146 4.146 21 C -0.107 4.107 22 C -0.147 4.147 23 C 0.003 3.997 24 C -0.061 4.061 25 O -0.226 6.226 26 C 0.104 3.896 27 O -0.228 6.228 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.247 0.753 36 H 0.184 0.816 37 H 0.158 0.842 38 H 0.150 0.850 39 H 0.099 0.901 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.233 -3.941 -2.578 14.992 hybrid contribution 0.523 1.121 -0.720 1.432 sum 14.756 -2.820 -3.298 15.381 Atomic orbital electron populations 1.69810 1.07346 1.28907 1.36468 1.25838 0.94725 1.00985 0.92414 0.86360 0.80968 0.81441 0.78570 1.18628 1.19998 1.19712 1.19470 0.96136 0.90635 1.42756 0.90879 1.17336 0.90732 0.91282 0.87740 1.21259 0.98940 0.96392 1.00575 1.20695 0.98721 0.93577 0.99596 1.20329 1.01744 0.96547 1.06800 1.20314 0.96018 0.95457 0.98179 1.19053 0.99561 0.94627 1.05103 1.20282 0.89603 1.03467 0.97437 1.21587 0.84133 0.74269 0.89455 1.90621 1.86292 1.45615 1.14410 1.43863 1.04104 1.74267 1.10375 1.16939 0.82879 0.98373 0.92506 1.21547 1.00454 1.00124 0.92493 1.20887 0.91007 0.98651 1.00141 1.20029 0.99986 1.03181 0.91477 1.19510 0.85419 1.00946 0.93795 1.19392 0.95271 1.05058 0.86334 1.87318 1.41837 1.64615 1.28837 1.25535 0.79631 0.93308 0.91136 1.87322 1.29581 1.64960 1.40919 0.91047 0.86770 0.89491 0.89548 0.89624 0.88023 0.90068 0.75326 0.81641 0.84197 0.84994 0.90082 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.55 11.07 55.55 0.61 -19.94 16 2 C 0.08 1.93 5.20 -17.34 -0.09 1.84 16 3 Si 0.90 19.00 29.58 -169.99 -5.03 13.97 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 7 C -0.46 -11.98 8.03 -37.74 -0.30 -12.28 16 8 H 0.07 1.88 6.82 -52.49 -0.36 1.52 16 9 C 0.13 3.44 5.52 -106.82 -0.59 2.85 16 10 C -0.15 -4.00 8.65 -38.87 -0.34 -4.33 16 11 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 12 C -0.23 -5.30 10.05 -39.29 -0.39 -5.70 16 13 C -0.08 -1.81 9.66 -39.66 -0.38 -2.19 16 14 C -0.18 -4.22 4.43 -103.91 -0.46 -4.68 16 15 C -0.07 -1.28 5.19 -29.03 -0.15 -1.43 16 16 C 0.52 9.71 7.30 -10.99 -0.08 9.63 16 17 O -0.50 -11.03 13.08 5.54 0.07 -10.96 16 18 N -0.68 -10.58 5.37 -9.77 -0.05 -10.63 16 19 C 0.19 2.99 6.43 -83.53 -0.54 2.46 16 20 C -0.13 -1.93 8.76 -39.39 -0.35 -2.28 16 21 C -0.09 -1.10 10.03 -39.60 -0.40 -1.49 16 22 C -0.13 -1.55 10.06 -39.42 -0.40 -1.95 16 23 C 0.05 0.66 7.14 -39.11 -0.28 0.39 16 24 C -0.01 -0.21 7.06 -38.95 -0.27 -0.48 16 25 O -0.31 -4.18 11.40 -45.96 -0.52 -4.71 16 26 C 0.22 2.21 8.90 101.05 0.90 3.11 16 27 O -0.31 -3.94 11.40 -45.73 -0.52 -4.46 16 28 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 29 H 0.11 3.09 6.42 -52.48 -0.34 2.76 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 1.91 7.15 -51.93 -0.37 1.53 16 34 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 35 H 0.41 5.22 8.80 -40.82 -0.36 4.86 16 36 H 0.17 2.80 5.70 -52.49 -0.30 2.50 16 37 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -31.05 343.46 -9.02 -40.07 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.24 Total: 10.99 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -4.52 Total: -19.51 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.56 Total: -30.57 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.97 Total: -20.13 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.05 -9.02 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782488809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.163 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds