Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 120.00247 * 2 1 4 4 H 1.48499 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46901 * 299.99673 * 3 2 1 6 6 H 1.48502 * 109.47504 * 59.99438 * 3 2 1 7 7 C 1.39947 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99706 * 166.88264 * 7 2 1 9 9 C 1.41392 * 120.00034 * 346.87654 * 7 2 1 10 10 C 1.40737 * 120.25019 * 329.89089 * 9 7 2 11 11 C 1.37593 * 119.74704 * 180.32020 * 10 9 7 12 12 C 1.38657 * 120.24781 * 359.65323 * 11 10 9 13 13 C 1.38615 * 120.50215 * 0.02840 * 12 11 10 14 14 C 1.37638 * 120.24575 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.12350 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47469 * 265.00406 * 15 14 13 17 17 O 1.21298 * 119.99671 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00348 * 180.27685 * 16 15 14 19 19 C 1.40128 * 120.00302 * 175.17362 * 18 16 15 20 20 C 1.38844 * 120.04630 * 28.25369 * 19 18 16 21 21 C 1.38157 * 120.06267 * 179.97438 * 20 19 18 22 22 C 1.38274 * 120.20216 * 0.02562 * 21 20 19 23 23 C 1.38648 * 120.15864 * 0.02562 * 22 21 20 24 24 C 1.39078 * 120.05017 * 207.97885 * 19 18 16 25 25 O 1.36580 * 131.52605 * 0.67749 * 24 19 18 26 26 C 1.43993 * 105.53434 * 162.28440 * 25 24 19 27 27 O 1.36511 * 131.47273 * 180.02562 * 23 22 21 28 28 H 0.97008 * 119.99583 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.12158 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.87425 * 179.68378 * 11 10 9 31 31 H 1.08000 * 119.74227 * 180.02562 * 12 11 10 32 32 H 1.07995 * 119.87678 * 179.97438 * 13 12 11 33 33 H 1.09000 * 109.46922 * 145.00126 * 15 14 13 34 34 H 1.09004 * 109.47030 * 25.00608 * 15 14 13 35 35 H 0.97008 * 119.99480 * 355.17783 * 18 16 15 36 36 H 1.08000 * 119.96663 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.90289 * 179.97438 * 21 20 19 38 38 H 1.07992 * 119.91958 * 179.97438 * 22 21 20 39 39 H 1.09004 * 110.57420 * 268.29184 * 26 25 24 40 40 H 1.08997 * 110.70394 * 145.47301 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0668 -1.2243 -0.2117 9 6 1.3286 -2.4204 0.2791 10 6 0.2090 -2.4240 1.1319 11 6 -0.4403 -3.6068 1.4011 12 6 0.0003 -4.7911 0.8301 13 6 1.0978 -4.7984 -0.0165 14 6 1.7633 -3.6272 -0.2990 15 6 2.9566 -3.6384 -1.2194 16 6 4.2196 -3.7371 -0.4033 17 8 4.1569 -3.7924 0.8068 18 7 5.4190 -3.7578 -1.0175 19 6 6.5960 -3.7474 -0.2571 20 6 6.6021 -4.2877 1.0218 21 6 7.7625 -4.2781 1.7717 22 6 8.9214 -3.7307 1.2529 23 6 8.9249 -3.1878 -0.0229 24 6 7.7611 -3.2010 -0.7846 25 8 8.0201 -2.6108 -1.9888 26 6 9.2472 -1.8804 -1.8043 27 8 9.9173 -2.5985 -0.7519 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1362 -1.5025 1.5770 30 1 -1.2965 -3.6127 2.0592 31 1 -0.5158 -5.7148 1.0467 32 1 1.4325 -5.7266 -0.4554 33 1 2.9729 -2.7188 -1.8044 34 1 2.8898 -4.4947 -1.8905 35 1 5.4675 -3.7798 -1.9862 36 1 5.6991 -4.7166 1.4306 37 1 7.7642 -4.6987 2.7664 38 1 9.8257 -3.7252 1.8431 39 1 9.0403 -0.8555 -1.4961 40 1 9.8434 -1.8919 -2.7167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782488809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = -63.469253 kcal Electronic energy + Delta-G solvation = -26756.282808 eV Core-core repulsion = 22887.174577 eV Total energy + Delta-G solvation = -3869.108231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.19030 -41.30312 -39.43625 -38.39420 -37.35469 -35.54437 -35.46860 -33.52296 -31.36923 -30.94454 -30.64453 -28.36391 -26.86819 -26.75123 -24.34963 -23.83372 -22.81694 -22.10461 -21.07106 -19.41111 -19.22287 -19.00708 -18.50170 -17.65244 -17.28930 -17.18682 -16.81088 -16.29381 -16.20123 -15.61058 -15.43367 -15.21990 -15.16188 -14.90774 -14.42256 -14.34098 -14.02078 -13.87834 -13.55352 -13.40639 -13.23246 -12.93886 -12.80948 -12.75607 -12.69581 -12.48251 -12.14003 -12.06689 -11.40314 -11.31969 -11.22130 -11.06139 -10.67437 -9.22120 -9.19864 -9.15386 -9.04137 -8.58425 -6.31703 0.07587 0.13696 0.97220 1.11848 1.33807 1.46327 1.49042 1.64767 1.73379 2.06551 2.18881 2.47644 2.64513 2.79307 3.57337 3.68185 3.81781 3.91881 4.02185 4.16336 4.20159 4.34432 4.36336 4.39614 4.45824 4.60142 4.65737 4.71636 4.79009 4.98020 5.06003 5.20411 5.21357 5.32306 5.35602 5.42380 5.53670 5.56020 5.78018 6.03137 6.11425 6.15915 6.21103 6.41100 6.42590 6.73829 6.99442 7.10366 7.18741 8.39189 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.004068 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.230659 B = 6881.500708 C = 8243.827623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.038 3.962 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.261 1.261 6 H -0.268 1.268 7 C -0.485 4.485 8 H 0.066 0.934 9 C 0.099 3.901 10 C -0.185 4.185 11 C -0.117 4.117 12 C -0.235 4.235 13 C -0.090 4.090 14 C -0.184 4.184 15 C -0.067 4.067 16 C 0.520 3.480 17 O -0.539 6.539 18 N -0.667 5.667 19 C 0.162 3.838 20 C -0.144 4.144 21 C -0.081 4.081 22 C -0.119 4.119 23 C 0.039 3.961 24 C -0.022 4.022 25 O -0.323 6.323 26 C 0.206 3.794 27 O -0.316 6.316 28 H 0.285 0.715 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.424 0.576 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.094 0.906 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.562 -4.654 -3.913 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.193 1.193 7 C -0.515 4.515 8 H 0.084 0.916 9 C 0.097 3.903 10 C -0.205 4.205 11 C -0.136 4.136 12 C -0.254 4.254 13 C -0.108 4.108 14 C -0.186 4.186 15 C -0.106 4.106 16 C 0.310 3.690 17 O -0.414 6.414 18 N -0.313 5.313 19 C 0.066 3.934 20 C -0.165 4.165 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.006 4.006 24 C -0.069 4.069 25 O -0.239 6.239 26 C 0.096 3.904 27 O -0.233 6.233 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.261 0.739 36 H 0.163 0.837 37 H 0.187 0.813 38 H 0.181 0.819 39 H 0.111 0.889 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 16.352 -4.506 -3.303 17.280 hybrid contribution -0.054 1.183 -0.517 1.292 sum 16.298 -3.323 -3.820 17.066 Atomic orbital electron populations 1.69870 1.08558 1.29970 1.37386 1.26562 0.95433 1.03835 0.91771 0.85382 0.79135 0.77513 0.79047 1.19127 1.18513 1.19322 1.19560 0.95851 0.91673 1.44428 0.91621 1.17699 0.91336 0.92716 0.88559 1.21247 1.00506 0.96588 1.02161 1.20966 0.99203 0.93427 0.99975 1.20756 1.01671 0.97139 1.05814 1.20761 0.95626 0.96497 0.97875 1.19507 1.00479 0.94031 1.04614 1.20291 0.88199 1.05096 0.97044 1.21416 0.84921 0.73853 0.88793 1.90614 1.86961 1.47881 1.15969 1.43562 1.03406 1.73314 1.10986 1.17103 0.83134 1.00044 0.93083 1.21516 1.00893 1.01115 0.92943 1.21206 0.90023 0.97739 1.00960 1.20415 1.00868 1.01417 0.91084 1.19813 0.85363 1.01052 0.94351 1.19457 0.95273 1.05118 0.87042 1.87291 1.43283 1.64952 1.28422 1.26052 0.78950 0.93174 0.92249 1.87309 1.29559 1.65094 1.41313 0.90486 0.88971 0.87610 0.86460 0.86172 0.88268 0.86158 0.73872 0.83662 0.81298 0.81902 0.88873 0.81588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.21 11.07 21.83 0.24 -43.96 16 2 C 0.04 1.94 5.20 85.26 0.44 2.38 16 3 Si 0.97 39.77 29.58 68.60 2.03 41.80 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.48 -26.17 8.03 23.46 0.19 -25.99 16 8 H 0.07 3.52 6.82 -2.91 -0.02 3.50 16 9 C 0.10 5.34 5.52 -21.29 -0.12 5.22 16 10 C -0.19 -10.11 8.65 22.73 0.20 -9.91 16 11 C -0.12 -5.64 10.02 22.22 0.22 -5.42 16 12 C -0.23 -10.29 10.05 22.46 0.23 -10.06 16 13 C -0.09 -3.85 9.66 22.22 0.21 -3.64 16 14 C -0.18 -8.59 4.43 -19.40 -0.09 -8.68 16 15 C -0.07 -2.48 5.19 29.10 0.15 -2.33 16 16 C 0.52 19.66 7.30 87.66 0.64 20.30 16 17 O -0.54 -24.51 13.08 -3.09 -0.04 -24.55 16 18 N -0.67 -20.61 5.37 -303.21 -1.63 -22.23 16 19 C 0.16 5.09 6.43 38.16 0.25 5.33 16 20 C -0.14 -4.42 8.76 22.40 0.20 -4.22 16 21 C -0.08 -1.88 10.03 22.26 0.22 -1.66 16 22 C -0.12 -2.60 10.06 22.38 0.23 -2.38 16 23 C 0.04 1.01 7.14 22.57 0.16 1.17 16 24 C -0.02 -0.64 7.06 22.68 0.16 -0.48 16 25 O -0.32 -8.25 11.40 -76.99 -0.88 -9.13 16 26 C 0.21 3.73 8.90 113.37 1.01 4.74 16 27 O -0.32 -7.26 11.40 -76.18 -0.87 -8.13 16 28 H 0.28 13.77 8.30 -92.70 -0.77 13.00 16 29 H 0.09 5.30 6.42 -2.91 -0.02 5.28 16 30 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 32 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 33 H 0.10 3.73 7.15 -2.39 -0.02 3.72 16 34 H 0.12 3.42 8.05 -2.39 -0.02 3.40 16 35 H 0.42 10.48 8.80 -92.70 -0.82 9.67 16 36 H 0.15 5.07 5.70 -2.91 -0.02 5.06 16 37 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 38 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.17 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.93 343.46 3.44 -66.49 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.29 Total: 35.33 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 4.30 Total: -35.61 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -1.39 Total: -66.20 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -1.79 Total: -41.80 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -69.93 3.44 -66.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782488809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.022 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds