Wall clock time and date at job start Tue Mar 31 2020 13:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47321 * 2 1 4 4 N 1.46504 * 109.47507 * 120.00231 * 2 1 3 5 5 C 1.46495 * 119.99605 * 304.59195 * 4 2 1 6 6 C 1.50696 * 109.47259 * 263.19129 * 5 4 2 7 7 H 1.08003 * 120.00019 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00402 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99617 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00127 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47339 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47027 * 120.00056 * 10 8 6 13 13 H 1.48502 * 109.47658 * 239.99924 * 10 8 6 14 14 C 1.34773 * 120.00244 * 124.58472 * 4 2 1 15 15 O 1.21365 * 119.99925 * 354.68345 * 14 4 2 16 16 C 1.49345 * 120.00262 * 174.67553 * 14 4 2 17 17 O 1.21380 * 119.99701 * 0.86242 * 16 14 4 18 18 N 1.34775 * 120.00429 * 180.86562 * 16 14 4 19 19 C 1.39791 * 120.00453 * 185.44802 * 18 16 14 20 20 C 1.39362 * 120.47201 * 28.46068 * 19 18 16 21 21 C 1.38447 * 118.37189 * 179.97438 * 20 19 18 22 22 C 1.38439 * 119.22838 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 119.55268 * 179.97438 * 22 21 20 24 24 N 1.31951 * 120.89703 * 0.25751 * 22 21 20 25 25 C 1.31849 * 121.78153 * 359.47290 * 24 22 21 26 26 H 1.09004 * 109.46824 * 299.99518 * 1 2 3 27 27 H 1.09001 * 109.47157 * 59.99950 * 1 2 3 28 28 H 1.09004 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47494 * 240.00166 * 2 1 3 30 30 H 1.09000 * 109.47362 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47225 * 300.00536 * 3 2 1 32 32 H 1.09006 * 109.47101 * 60.00042 * 3 2 1 33 33 H 1.09005 * 109.47453 * 23.19463 * 5 4 2 34 34 H 1.09004 * 109.46975 * 143.19082 * 5 4 2 35 35 H 0.96999 * 119.99985 * 179.97438 * 9 8 6 36 36 H 0.97001 * 119.99864 * 5.45497 * 18 16 14 37 37 H 1.08003 * 120.81947 * 359.95448 * 20 19 18 38 38 H 1.07998 * 120.38761 * 180.02562 * 21 20 19 39 39 H 1.08002 * 119.66055 * 180.28822 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5835 -0.2515 2.5243 6 6 2.6230 0.6655 3.1156 7 1 3.5183 0.8976 2.5580 8 6 2.4316 1.2073 4.3689 9 7 1.3421 0.9235 5.0486 10 14 3.7205 2.3434 5.1021 11 1 4.8439 2.5012 4.1438 12 1 3.1128 3.6707 5.3747 13 1 4.2291 1.7620 6.3704 14 6 2.8677 -1.7301 1.0746 15 8 3.1524 -2.1556 -0.0258 16 6 3.4586 -2.3581 2.2939 17 8 3.1619 -1.9425 3.3951 18 7 4.3215 -3.3862 2.1717 19 6 4.7864 -4.0480 3.3119 20 6 4.0040 -4.1061 4.4637 21 6 4.5069 -4.7731 5.5677 22 6 5.7601 -5.3565 5.4921 23 17 6.3992 -6.1944 6.8716 24 7 6.4778 -5.2794 4.3875 25 6 6.0337 -4.6581 3.3127 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.6360 0.2805 2.4390 34 1 1.4555 -1.1201 3.1703 35 1 1.2076 1.3044 5.9305 36 1 4.6199 -3.6670 1.2925 37 1 3.0293 -3.6418 4.4945 38 1 3.9280 -4.8384 6.4770 39 1 6.6480 -4.6198 2.4253 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783398916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:42 Heat of formation + Delta-G solvation = -22.085092 kcal Electronic energy + Delta-G solvation = -25599.017933 eV Core-core repulsion = 21761.564155 eV Total energy + Delta-G solvation = -3837.453778 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99875 -39.85034 -38.21838 -36.66266 -36.28479 -34.82734 -32.88753 -32.33409 -31.35466 -29.92838 -27.31376 -26.80157 -25.17676 -24.02478 -23.09860 -22.76414 -20.57407 -19.15834 -17.91310 -17.34512 -17.04013 -16.69752 -16.28088 -16.17331 -15.21937 -14.92619 -14.46734 -14.43041 -14.29162 -13.80592 -13.70966 -13.33798 -13.19517 -12.65075 -12.52672 -12.39051 -11.91865 -11.86499 -11.76561 -11.59493 -11.35830 -11.11431 -10.95885 -10.90615 -10.72103 -10.60944 -10.27740 -10.01651 -9.87866 -9.69918 -9.66355 -8.81718 -8.38891 -8.22609 -7.94641 -6.10114 -4.11091 0.77764 1.13653 1.78689 1.98008 2.64991 3.25176 3.34025 3.36437 3.50433 3.79076 3.89955 4.37913 4.41864 4.72870 4.76089 4.87759 5.06785 5.26863 5.32533 5.46872 5.51118 5.66709 5.72523 5.96918 5.98464 6.01532 6.11189 6.20562 6.28729 6.54612 6.61533 6.64717 6.84989 7.13991 7.29316 7.37541 7.61071 7.79427 7.97638 8.09895 8.16676 8.51567 8.88401 9.51405 10.98791 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.004147 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.820936 B = 6750.648323 C = 8302.798614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.155 4.155 4 N -0.552 5.552 5 C 0.227 3.773 6 C -0.509 4.509 7 H 0.054 0.946 8 C 0.070 3.930 9 N -0.890 5.890 10 Si 0.889 3.111 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.509 3.491 15 O -0.561 6.561 16 C 0.488 3.512 17 O -0.423 6.423 18 N -0.655 5.655 19 C 0.121 3.879 20 C -0.073 4.073 21 C -0.125 4.125 22 C 0.145 3.855 23 Cl -0.040 7.040 24 N -0.458 5.458 25 C 0.087 3.913 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.261 0.739 36 H 0.421 0.579 37 H 0.165 0.835 38 H 0.149 0.851 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -9.275 -4.232 10.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.282 5.282 5 C 0.108 3.892 6 C -0.547 4.547 7 H 0.072 0.928 8 C -0.132 4.132 9 N -0.529 5.529 10 Si 0.717 3.283 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.210 1.210 14 C 0.291 3.709 15 O -0.443 6.443 16 C 0.270 3.730 17 O -0.290 6.290 18 N -0.304 5.304 19 C 0.022 3.978 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.020 4.020 23 Cl -0.012 7.012 24 N -0.169 5.169 25 C -0.074 4.074 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.259 0.741 37 H 0.182 0.818 38 H 0.166 0.834 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.381 -9.490 -3.732 10.743 hybrid contribution 0.227 0.964 0.372 1.058 sum 3.608 -8.526 -3.360 9.849 Atomic orbital electron populations 1.22133 0.94928 1.02021 1.02648 1.21059 0.94154 0.93607 0.88247 1.22092 1.01411 0.95389 1.02414 1.48386 1.41236 1.28010 1.10576 1.19936 0.96030 0.97313 0.75872 1.21201 1.05000 1.27085 1.01458 0.92766 1.24772 0.95364 0.96517 0.96550 1.69910 1.25925 1.44329 1.12738 0.86587 0.81853 0.80484 0.79345 1.19978 1.21033 1.20973 1.19607 0.81161 0.82093 0.88075 1.90659 1.62618 1.63887 1.27137 1.20565 0.80827 0.80309 0.91324 1.90997 1.54406 1.56919 1.26644 1.43230 1.46123 1.32477 1.08550 1.18872 0.94020 0.95734 0.89147 1.21847 1.01182 0.95984 0.91124 1.21775 0.94904 0.97569 1.00392 1.21515 0.91796 0.98875 0.89825 1.98385 1.87663 1.76468 1.38661 1.66908 1.34815 1.16436 0.98698 1.22383 0.91693 0.96876 0.96453 0.91168 0.91887 0.92756 0.89217 0.92767 0.92683 0.90350 0.94394 0.92066 0.92888 0.74147 0.81804 0.83368 0.81566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.10 37.16 0.34 -1.98 16 2 C 0.13 2.22 3.25 -67.93 -0.22 2.00 16 3 C -0.16 -2.52 8.92 37.16 0.33 -2.19 16 4 N -0.55 -10.88 2.38 -168.01 -0.40 -11.28 16 5 C 0.23 5.20 4.11 -5.20 -0.02 5.18 16 6 C -0.51 -12.93 6.82 -34.44 -0.24 -13.17 16 7 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 8 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 9 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 10 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.51 9.78 7.67 -11.64 -0.09 9.69 16 15 O -0.56 -10.77 15.83 5.48 0.09 -10.68 16 16 C 0.49 8.98 7.51 -11.64 -0.09 8.89 16 17 O -0.42 -9.09 9.53 5.47 0.05 -9.03 16 18 N -0.66 -9.50 5.35 -10.20 -0.05 -9.55 16 19 C 0.12 1.72 6.39 -83.58 -0.53 1.18 16 20 C -0.07 -1.09 8.79 -39.09 -0.34 -1.44 16 21 C -0.13 -1.67 9.87 -39.43 -0.39 -2.06 16 22 C 0.14 2.00 7.27 -17.43 -0.13 1.87 16 23 Cl -0.04 -0.49 29.10 -51.86 -1.51 -2.00 16 24 N -0.46 -6.51 10.33 -10.19 -0.11 -6.62 16 25 C 0.09 1.11 11.11 -17.32 -0.19 0.91 16 26 H 0.07 1.12 6.50 -51.93 -0.34 0.78 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.48 6.91 -51.93 -0.36 1.12 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.44 7.30 -51.93 -0.38 1.06 16 33 H 0.04 0.90 6.20 -51.93 -0.32 0.58 16 34 H 0.06 1.53 5.86 -51.93 -0.30 1.22 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.42 5.07 8.29 -40.82 -0.34 4.73 16 37 H 0.16 2.67 6.17 -52.48 -0.32 2.34 16 38 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -29.36 344.96 -7.13 -36.49 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.44 Total: 4.56 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -1.67 Total: 10.67 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.18 Total: -51.28 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.14 Total: -19.71 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -2.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.36 -7.13 -36.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783398916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.402 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds