Wall clock time and date at job start Tue Mar 31 2020 13:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47321 * 2 1 4 4 N 1.46504 * 109.47507 * 120.00231 * 2 1 3 5 5 C 1.46495 * 119.99605 * 304.59195 * 4 2 1 6 6 C 1.50696 * 109.47259 * 263.19129 * 5 4 2 7 7 H 1.08003 * 120.00019 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00402 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99617 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00127 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47339 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47027 * 120.00056 * 10 8 6 13 13 H 1.48502 * 109.47658 * 239.99924 * 10 8 6 14 14 C 1.34773 * 120.00244 * 124.58472 * 4 2 1 15 15 O 1.21365 * 119.99925 * 354.68345 * 14 4 2 16 16 C 1.49345 * 120.00262 * 174.67553 * 14 4 2 17 17 O 1.21380 * 119.99701 * 0.86242 * 16 14 4 18 18 N 1.34775 * 120.00429 * 180.86562 * 16 14 4 19 19 C 1.39791 * 120.00453 * 185.44802 * 18 16 14 20 20 C 1.39362 * 120.47201 * 28.46068 * 19 18 16 21 21 C 1.38447 * 118.37189 * 179.97438 * 20 19 18 22 22 C 1.38439 * 119.22838 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 119.55268 * 179.97438 * 22 21 20 24 24 N 1.31951 * 120.89703 * 0.25751 * 22 21 20 25 25 C 1.31849 * 121.78153 * 359.47290 * 24 22 21 26 26 H 1.09004 * 109.46824 * 299.99518 * 1 2 3 27 27 H 1.09001 * 109.47157 * 59.99950 * 1 2 3 28 28 H 1.09004 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47494 * 240.00166 * 2 1 3 30 30 H 1.09000 * 109.47362 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47225 * 300.00536 * 3 2 1 32 32 H 1.09006 * 109.47101 * 60.00042 * 3 2 1 33 33 H 1.09005 * 109.47453 * 23.19463 * 5 4 2 34 34 H 1.09004 * 109.46975 * 143.19082 * 5 4 2 35 35 H 0.96999 * 119.99985 * 179.97438 * 9 8 6 36 36 H 0.97001 * 119.99864 * 5.45497 * 18 16 14 37 37 H 1.08003 * 120.81947 * 359.95448 * 20 19 18 38 38 H 1.07998 * 120.38761 * 180.02562 * 21 20 19 39 39 H 1.08002 * 119.66055 * 180.28822 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5835 -0.2515 2.5243 6 6 2.6230 0.6655 3.1156 7 1 3.5183 0.8976 2.5580 8 6 2.4316 1.2073 4.3689 9 7 1.3421 0.9235 5.0486 10 14 3.7205 2.3434 5.1021 11 1 4.8439 2.5012 4.1438 12 1 3.1128 3.6707 5.3747 13 1 4.2291 1.7620 6.3704 14 6 2.8677 -1.7301 1.0746 15 8 3.1524 -2.1556 -0.0258 16 6 3.4586 -2.3581 2.2939 17 8 3.1619 -1.9425 3.3951 18 7 4.3215 -3.3862 2.1717 19 6 4.7864 -4.0480 3.3119 20 6 4.0040 -4.1061 4.4637 21 6 4.5069 -4.7731 5.5677 22 6 5.7601 -5.3565 5.4921 23 17 6.3992 -6.1944 6.8716 24 7 6.4778 -5.2794 4.3875 25 6 6.0337 -4.6581 3.3127 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.6360 0.2805 2.4390 34 1 1.4555 -1.1201 3.1703 35 1 1.2076 1.3044 5.9305 36 1 4.6199 -3.6670 1.2925 37 1 3.0293 -3.6418 4.4945 38 1 3.9280 -4.8384 6.4770 39 1 6.6480 -4.6198 2.4253 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783398916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:41 Heat of formation + Delta-G solvation = -40.325280 kcal Electronic energy + Delta-G solvation = -25599.808886 eV Core-core repulsion = 21761.564155 eV Total energy + Delta-G solvation = -3838.244732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31151 -41.15519 -39.62323 -37.87842 -37.64324 -36.11844 -34.78924 -33.44050 -32.89798 -31.09508 -29.18361 -28.05458 -26.54816 -25.13524 -24.95708 -23.99530 -21.90509 -20.53533 -19.29436 -18.66369 -18.41616 -18.39127 -17.69027 -17.46968 -16.70290 -16.58575 -16.06715 -15.63310 -15.41956 -15.18865 -15.05840 -14.75275 -14.45004 -14.29460 -13.88815 -13.73634 -13.43115 -13.30951 -13.03003 -12.95359 -12.79076 -12.72048 -12.40626 -12.36661 -12.25439 -11.96997 -11.84032 -11.64730 -11.48281 -11.00322 -10.87664 -10.54997 -10.13454 -9.62548 -9.34883 -8.12075 -6.16907 -0.37239 0.03127 0.53874 0.72929 1.30927 1.35815 1.40248 1.47543 2.14954 2.39253 2.55108 2.57564 3.22970 3.28948 3.44477 3.66294 3.77713 3.88992 4.01635 4.23333 4.39595 4.48315 4.59709 4.63588 4.83005 4.85984 4.91527 4.96269 4.99017 5.13682 5.23904 5.41963 5.47638 5.48846 5.59960 5.79729 6.01634 6.15536 6.34281 6.53070 6.72338 6.85628 7.04595 7.47702 8.96335 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.004147 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.820936 B = 6750.648323 C = 8302.798614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 C -0.148 4.148 4 N -0.559 5.559 5 C 0.248 3.752 6 C -0.500 4.500 7 H 0.043 0.957 8 C 0.026 3.974 9 N -0.920 5.920 10 Si 0.938 3.062 11 H -0.274 1.274 12 H -0.276 1.276 13 H -0.289 1.289 14 C 0.506 3.494 15 O -0.559 6.559 16 C 0.490 3.510 17 O -0.462 6.462 18 N -0.635 5.635 19 C 0.106 3.894 20 C -0.086 4.086 21 C -0.125 4.125 22 C 0.140 3.860 23 Cl -0.026 7.026 24 N -0.471 5.471 25 C 0.102 3.898 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.028 0.972 34 H 0.041 0.959 35 H 0.261 0.739 36 H 0.434 0.566 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 -9.649 -5.381 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 C -0.206 4.206 4 N -0.289 5.289 5 C 0.128 3.872 6 C -0.539 4.539 7 H 0.061 0.939 8 C -0.173 4.173 9 N -0.560 5.560 10 Si 0.766 3.234 11 H -0.199 1.199 12 H -0.202 1.202 13 H -0.215 1.215 14 C 0.288 3.712 15 O -0.441 6.441 16 C 0.271 3.729 17 O -0.331 6.331 18 N -0.285 5.285 19 C 0.008 3.992 20 C -0.114 4.114 21 C -0.146 4.146 22 C -0.024 4.024 23 Cl 0.002 6.998 24 N -0.182 5.182 25 C -0.059 4.059 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.274 0.726 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.421 -9.894 -4.917 11.900 hybrid contribution -0.036 0.974 0.682 1.190 sum 4.385 -8.920 -4.235 10.804 Atomic orbital electron populations 1.22081 0.93189 1.02342 1.03351 1.21352 0.95623 0.93607 0.87171 1.22031 1.00476 0.95161 1.02906 1.48386 1.41646 1.28527 1.10337 1.19433 0.94907 0.95789 0.77105 1.21314 1.04709 1.26714 1.01172 0.93874 1.25369 0.96812 0.97959 0.97175 1.69995 1.27334 1.45663 1.13049 0.85811 0.80028 0.79311 0.78282 1.19868 1.20205 1.21493 1.19787 0.80987 0.81995 0.88442 1.90648 1.62540 1.63792 1.27090 1.20513 0.81057 0.80786 0.90503 1.90996 1.56072 1.58494 1.27567 1.42978 1.44806 1.31184 1.09499 1.18983 0.94822 0.96576 0.88794 1.21802 1.00855 0.96512 0.92206 1.21910 0.95060 0.97084 1.00593 1.21719 0.91860 0.98621 0.90230 1.98389 1.87440 1.76070 1.37876 1.67022 1.35059 1.16981 0.99120 1.22860 0.91052 0.94925 0.97061 0.92973 0.88576 0.92648 0.88404 0.94092 0.89079 0.92888 0.95382 0.94082 0.92973 0.72594 0.83673 0.81686 0.78176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.10 71.98 0.66 -3.56 16 2 C 0.12 4.03 3.25 44.99 0.15 4.18 16 3 C -0.15 -4.64 8.92 71.98 0.64 -3.99 16 4 N -0.56 -22.03 2.38 -803.83 -1.91 -23.94 16 5 C 0.25 11.62 4.11 85.63 0.35 11.97 16 6 C -0.50 -25.84 6.82 25.60 0.17 -25.67 16 7 H 0.04 2.29 7.81 -2.91 -0.02 2.26 16 8 C 0.03 1.40 5.46 84.66 0.46 1.86 16 9 N -0.92 -51.78 13.29 21.45 0.28 -51.50 16 10 Si 0.94 43.57 29.54 68.60 2.03 45.60 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 14 C 0.51 19.26 7.67 87.24 0.67 19.93 16 15 O -0.56 -20.68 15.83 -3.29 -0.05 -20.74 16 16 C 0.49 18.07 7.51 87.24 0.66 18.73 16 17 O -0.46 -20.35 9.53 -3.34 -0.03 -20.38 16 18 N -0.64 -17.84 5.35 -304.52 -1.63 -19.47 16 19 C 0.11 2.92 6.39 38.29 0.24 3.16 16 20 C -0.09 -2.56 8.79 22.59 0.20 -2.36 16 21 C -0.13 -3.28 9.87 22.37 0.22 -3.06 16 22 C 0.14 3.68 7.27 84.72 0.62 4.29 16 23 Cl -0.03 -0.60 29.10 -2.72 -0.08 -0.68 16 24 N -0.47 -12.50 10.33 -186.14 -1.92 -14.43 16 25 C 0.10 2.38 11.11 84.84 0.94 3.32 16 26 H 0.05 1.64 6.50 -2.39 -0.02 1.62 16 27 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 3.04 6.91 -2.38 -0.02 3.02 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.05 1.93 7.30 -2.38 -0.02 1.91 16 33 H 0.03 1.38 6.20 -2.38 -0.01 1.36 16 34 H 0.04 2.13 5.86 -2.38 -0.01 2.12 16 35 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 36 H 0.43 9.69 8.29 -92.71 -0.77 8.92 16 37 H 0.15 4.94 6.17 -2.91 -0.02 4.93 16 38 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 39 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -62.93 344.96 3.00 -59.92 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.34 Total: 16.81 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 5.98 Total: 28.80 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -5.18 Total: -109.33 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.08 Total: -41.12 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -62.93 3.00 -59.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783398916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.595 kcal (2) G-P(sol) polarization free energy of solvation -62.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds