Wall clock time and date at job start Tue Mar 31 2020 14:23:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46902 * 110.99873 * 2 1
4 4 C 1.39903 * 111.00287 * 123.95380 * 2 1 3
5 5 C 1.38890 * 120.00166 * 300.02241 * 4 2 1
6 6 C 1.38038 * 120.01235 * 179.97438 * 5 4 2
7 7 C 1.38941 * 120.02027 * 0.02562 * 6 5 4
8 8 N 1.39885 * 119.99861 * 179.97438 * 7 6 5
9 9 C 1.34778 * 120.00343 * 33.37507 * 8 7 6
10 10 O 1.21398 * 119.99322 * 5.28093 * 9 8 7
11 11 C 1.49319 * 120.00481 * 185.27594 * 9 8 7
12 12 O 1.21368 * 119.99740 * 0.02562 * 11 9 8
13 13 N 1.34769 * 120.00266 * 179.97438 * 11 9 8
14 14 C 1.46496 * 120.00354 * 180.02562 * 13 11 9
15 15 C 1.50702 * 109.47662 * 180.02562 * 14 13 11
16 16 H 1.08002 * 119.99507 * 0.02562 * 15 14 13
17 17 C 1.37878 * 120.00246 * 179.97438 * 15 14 13
18 18 N 1.31510 * 120.00141 * 0.02562 * 17 15 14
19 19 Si 1.86802 * 119.99635 * 179.97438 * 17 15 14
20 20 H 1.48507 * 109.46839 * 60.00749 * 19 17 15
21 21 H 1.48506 * 109.46545 * 179.97438 * 19 17 15
22 22 H 1.48497 * 109.47523 * 300.00542 * 19 17 15
23 23 C 1.38915 * 120.00352 * 359.72292 * 7 6 5
24 24 C 1.38136 * 119.98403 * 0.54831 * 23 7 6
25 25 Cl 1.73595 * 120.00715 * 179.72194 * 24 23 7
26 26 H 1.09000 * 109.47295 * 296.04342 * 1 2 3
27 27 H 1.09002 * 109.47413 * 56.04817 * 1 2 3
28 28 H 1.09000 * 109.47144 * 176.04476 * 1 2 3
29 29 H 1.09005 * 109.46821 * 183.95859 * 3 2 1
30 30 H 1.08996 * 109.47110 * 303.95189 * 3 2 1
31 31 H 1.08998 * 109.47170 * 63.95354 * 3 2 1
32 32 H 1.07996 * 119.99675 * 0.02562 * 5 4 2
33 33 H 1.08001 * 119.98978 * 180.02562 * 6 5 4
34 34 H 0.97002 * 119.99993 * 213.37821 * 8 7 6
35 35 H 0.97006 * 119.99927 * 0.02562 * 13 11 9
36 36 H 1.09006 * 109.47062 * 300.00149 * 14 13 11
37 37 H 1.09000 * 109.47209 * 59.99956 * 14 13 11
38 38 H 0.96998 * 120.00277 * 179.97438 * 18 17 15
39 39 H 1.07994 * 120.00904 * 180.29874 * 23 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.9704 -0.7295 1.0834
5 6 1.6575 -0.3482 2.3818
6 6 2.1517 -1.0681 3.4508
7 6 2.9628 -2.1741 3.2287
8 7 3.4638 -2.9030 4.3124
9 6 2.7307 -3.0293 5.4363
10 8 1.5983 -2.5933 5.4744
11 6 3.3111 -3.7055 6.6344
12 8 4.4433 -4.1410 6.5963
13 7 2.5782 -3.8312 7.7584
14 6 3.1479 -4.4941 8.9340
15 6 2.1318 -4.5040 10.0470
16 1 1.1588 -4.0610 9.8937
17 6 2.4440 -5.0793 11.2605
18 7 3.6287 -5.6190 11.4470
19 14 1.1847 -5.0907 12.6401
20 1 -0.0283 -5.8239 12.1970
21 1 1.7618 -5.7639 13.8314
22 1 0.8193 -3.6942 12.9885
23 6 3.2719 -2.5592 1.9303
24 6 2.7821 -1.8356 0.8604
25 17 3.1740 -2.3121 -0.7622
26 1 -0.3634 0.4512 0.9233
27 1 -0.3634 0.5739 -0.8525
28 1 -0.3633 -1.0252 -0.0709
29 1 3.0827 1.3432 -0.0709
30 1 1.5898 1.9163 -0.8524
31 1 1.7043 1.8724 0.9233
32 1 1.0267 0.5111 2.5550
33 1 1.9078 -0.7716 4.4603
34 1 4.3389 -3.3176 4.2551
35 1 1.6734 -3.4828 7.7889
36 1 3.4164 -5.5193 8.6787
37 1 4.0381 -3.9556 9.2591
38 1 3.8484 -6.0234 12.3008
39 1 3.8984 -3.4217 1.7574
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000787593858.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:23:50
Heat of formation + Delta-G solvation = -36.327448 kcal
Electronic energy + Delta-G solvation = -24025.061705 eV
Core-core repulsion = 20186.990332 eV
Total energy + Delta-G solvation = -3838.071373 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-41.05548 -39.85810 -38.30633 -37.02145 -36.58206 -34.86367 -34.02940 -32.42889
-31.10575 -29.45380 -27.93897 -27.78963 -25.47645 -24.03230 -23.34888 -22.23611
-21.16371 -20.01919 -18.87205 -17.87510 -17.03990 -16.62454 -16.16432 -15.76733
-15.50371 -15.40605 -15.06098 -14.85135 -14.39067 -14.31820 -14.11389 -13.90116
-13.35816 -13.24508 -13.16981 -12.69797 -12.32102 -12.10427 -12.08593 -12.05215
-11.96940 -11.71470 -11.37884 -11.07466 -11.00952 -10.94003 -10.44615 -10.36742
-9.55090 -9.28363 -9.08872 -8.90664 -8.87984 -8.34647 -8.17708 -6.26156
-4.33999 0.69066 0.90205 1.69851 1.92399 2.55040 3.21955 3.22424
3.26828 3.28743 3.45258 3.57771 3.93466 4.27651 4.46995 4.72320
4.85244 4.92362 4.93894 4.95834 5.08761 5.10579 5.14473 5.24798
5.34777 5.40999 5.51938 5.54877 5.87237 6.01240 6.02195 6.41192
6.47303 6.86000 6.93247 7.01064 7.10556 7.30321 7.48397 7.71864
7.81804 8.29364 8.48190 8.76500 9.32466 10.83802
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.026896 B = 0.002210 C = 0.002095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1040.814799 B =12666.327043 C =13359.197955
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 N -0.503 5.503
3 C 0.028 3.972
4 C 0.074 3.926
5 C -0.115 4.115
6 C -0.107 4.107
7 C 0.165 3.835
8 N -0.651 5.651
9 C 0.511 3.489
10 O -0.502 6.502
11 C 0.491 3.509
12 O -0.534 6.534
13 N -0.669 5.669
14 C 0.246 3.754
15 C -0.548 4.548
16 H 0.066 0.934
17 C 0.066 3.934
18 N -0.885 5.885
19 Si 0.907 3.093
20 H -0.274 1.274
21 H -0.285 1.285
22 H -0.274 1.274
23 C -0.134 4.134
24 C 0.008 3.992
25 Cl -0.051 7.051
26 H 0.032 0.968
27 H 0.074 0.926
28 H 0.071 0.929
29 H 0.071 0.929
30 H 0.074 0.926
31 H 0.032 0.968
32 H 0.132 0.868
33 H 0.143 0.857
34 H 0.426 0.574
35 H 0.405 0.595
36 H 0.036 0.964
37 H 0.036 0.964
38 H 0.268 0.732
39 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.004 11.743 -23.411 26.363
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.224 5.224
3 C -0.118 4.118
4 C -0.022 4.022
5 C -0.136 4.136
6 C -0.128 4.128
7 C 0.069 3.931
8 N -0.298 5.298
9 C 0.294 3.706
10 O -0.375 6.375
11 C 0.270 3.730
12 O -0.413 6.413
13 N -0.318 5.318
14 C 0.127 3.873
15 C -0.587 4.587
16 H 0.084 0.916
17 C -0.138 4.138
18 N -0.522 5.522
19 Si 0.734 3.266
20 H -0.199 1.199
21 H -0.210 1.210
22 H -0.199 1.199
23 C -0.155 4.155
24 C -0.021 4.021
25 Cl -0.022 7.022
26 H 0.051 0.949
27 H 0.093 0.907
28 H 0.090 0.910
29 H 0.090 0.910
30 H 0.092 0.908
31 H 0.050 0.950
32 H 0.150 0.850
33 H 0.161 0.839
34 H 0.264 0.736
35 H 0.239 0.761
36 H 0.054 0.946
37 H 0.054 0.946
38 H 0.078 0.922
39 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -2.700 11.345 -23.726 26.438
hybrid contribution -0.846 0.223 1.384 1.637
sum -3.546 11.568 -22.343 25.409
Atomic orbital electron populations
1.22472 0.85569 1.02946 1.00952 1.59621 1.08621 1.14179 1.39938
1.22461 1.01186 0.87263 1.00929 1.18502 0.98892 0.95373 0.89406
1.21410 1.00228 1.00231 0.91698 1.21174 0.97891 0.93132 1.00642
1.17593 0.97461 0.91734 0.86264 1.43284 1.22037 1.51943 1.12562
1.20967 0.85468 0.79822 0.84374 1.90754 1.17451 1.46550 1.82737
1.19604 0.86692 0.82445 0.84298 1.90750 1.18030 1.49272 1.83214
1.46436 1.17709 1.55146 1.12495 1.19366 0.95038 0.93064 0.79862
1.21152 1.00207 1.40128 0.97179 0.91592 1.24936 0.95752 0.94565
0.98582 1.69947 1.20195 1.36818 1.25205 0.86416 0.80997 0.78483
0.80719 1.19939 1.20998 1.19944 1.20738 1.04103 1.01196 0.89485
1.20462 0.99452 0.95785 0.86351 1.98366 1.92598 1.90984 1.20224
0.94912 0.90738 0.90980 0.91032 0.90753 0.94986 0.84992 0.83907
0.73571 0.76051 0.94633 0.94635 0.92213 0.83953
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.20 9.35 60.06 0.56 0.76 16
2 N -0.50 -4.38 4.38 -186.76 -0.82 -5.20 16
3 C 0.03 0.20 9.39 60.07 0.56 0.76 16
4 C 0.07 0.74 4.74 -83.65 -0.40 0.35 16
5 C -0.11 -1.16 8.57 -39.41 -0.34 -1.49 16
6 C -0.11 -1.27 8.65 -39.39 -0.34 -1.61 16
7 C 0.16 1.96 6.28 -83.67 -0.53 1.43 16
8 N -0.65 -8.32 5.33 -10.26 -0.05 -8.38 16
9 C 0.51 8.09 7.62 -11.65 -0.09 8.00 16
10 O -0.50 -8.50 14.16 5.46 0.08 -8.43 16
11 C 0.49 9.37 7.88 -11.65 -0.09 9.28 16
12 O -0.53 -11.31 16.48 5.48 0.09 -11.22 16
13 N -0.67 -13.88 5.54 -61.95 -0.34 -14.22 16
14 C 0.25 6.22 5.43 -5.19 -0.03 6.19 16
15 C -0.55 -14.47 9.28 -34.44 -0.32 -14.79 16
16 H 0.07 1.64 7.60 -52.49 -0.40 1.25 16
17 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16
18 N -0.88 -25.17 13.29 55.43 0.74 -24.43 16
19 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16
20 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16
21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
22 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16
23 C -0.13 -1.40 9.74 -39.37 -0.38 -1.78 16
24 C 0.01 0.08 6.33 -39.34 -0.25 -0.17 16
25 Cl -0.05 -0.51 28.43 -51.86 -1.47 -1.98 16
26 H 0.03 0.22 7.12 -51.93 -0.37 -0.15 16
27 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16
28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
30 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16
31 H 0.03 0.21 7.34 -51.93 -0.38 -0.18 16
32 H 0.13 1.11 7.01 -52.49 -0.37 0.74 16
33 H 0.14 1.83 6.41 -52.49 -0.34 1.50 16
34 H 0.43 4.78 8.30 -40.82 -0.34 4.44 16
35 H 0.40 7.74 7.79 -40.82 -0.32 7.43 16
36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16
37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16
38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16
39 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16
LS Contribution 353.91 15.07 5.33 5.33
Total: -1.00 -29.97 353.91 -7.81 -37.78
By element:
Atomic # 1 Polarization: 11.32 SS G_CDS: -4.60 Total: 6.72 kcal
Atomic # 6 Polarization: 10.35 SS G_CDS: -1.73 Total: 8.62 kcal
Atomic # 7 Polarization: -51.75 SS G_CDS: -0.48 Total: -52.23 kcal
Atomic # 8 Polarization: -19.81 SS G_CDS: 0.17 Total: -19.64 kcal
Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal
Atomic # 17 Polarization: -0.51 SS G_CDS: -1.47 Total: -1.98 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -29.97 -7.81 -37.78 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787593858.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.450 kcal
(2) G-P(sol) polarization free energy of solvation -29.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.518 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.327 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds