Wall clock time and date at job start Tue Mar 31 2020 14:23:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46902 * 110.99873 * 2 1
4 4 C 1.39903 * 111.00287 * 123.95380 * 2 1 3
5 5 C 1.38890 * 120.00166 * 300.02241 * 4 2 1
6 6 C 1.38038 * 120.01235 * 179.97438 * 5 4 2
7 7 C 1.38941 * 120.02027 * 0.02562 * 6 5 4
8 8 N 1.39885 * 119.99861 * 179.97438 * 7 6 5
9 9 C 1.34778 * 120.00343 * 33.37507 * 8 7 6
10 10 O 1.21398 * 119.99322 * 5.28093 * 9 8 7
11 11 C 1.49319 * 120.00481 * 185.27594 * 9 8 7
12 12 O 1.21368 * 119.99740 * 0.02562 * 11 9 8
13 13 N 1.34769 * 120.00266 * 179.97438 * 11 9 8
14 14 C 1.46496 * 120.00354 * 180.02562 * 13 11 9
15 15 C 1.50702 * 109.47662 * 180.02562 * 14 13 11
16 16 H 1.08002 * 119.99507 * 0.02562 * 15 14 13
17 17 C 1.37878 * 120.00246 * 179.97438 * 15 14 13
18 18 N 1.31510 * 120.00141 * 0.02562 * 17 15 14
19 19 Si 1.86802 * 119.99635 * 179.97438 * 17 15 14
20 20 H 1.48507 * 109.46839 * 60.00749 * 19 17 15
21 21 H 1.48506 * 109.46545 * 179.97438 * 19 17 15
22 22 H 1.48497 * 109.47523 * 300.00542 * 19 17 15
23 23 C 1.38915 * 120.00352 * 359.72292 * 7 6 5
24 24 C 1.38136 * 119.98403 * 0.54831 * 23 7 6
25 25 Cl 1.73595 * 120.00715 * 179.72194 * 24 23 7
26 26 H 1.09000 * 109.47295 * 296.04342 * 1 2 3
27 27 H 1.09002 * 109.47413 * 56.04817 * 1 2 3
28 28 H 1.09000 * 109.47144 * 176.04476 * 1 2 3
29 29 H 1.09005 * 109.46821 * 183.95859 * 3 2 1
30 30 H 1.08996 * 109.47110 * 303.95189 * 3 2 1
31 31 H 1.08998 * 109.47170 * 63.95354 * 3 2 1
32 32 H 1.07996 * 119.99675 * 0.02562 * 5 4 2
33 33 H 1.08001 * 119.98978 * 180.02562 * 6 5 4
34 34 H 0.97002 * 119.99993 * 213.37821 * 8 7 6
35 35 H 0.97006 * 119.99927 * 0.02562 * 13 11 9
36 36 H 1.09006 * 109.47062 * 300.00149 * 14 13 11
37 37 H 1.09000 * 109.47209 * 59.99956 * 14 13 11
38 38 H 0.96998 * 120.00277 * 179.97438 * 18 17 15
39 39 H 1.07994 * 120.00904 * 180.29874 * 23 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.9704 -0.7295 1.0834
5 6 1.6575 -0.3482 2.3818
6 6 2.1517 -1.0681 3.4508
7 6 2.9628 -2.1741 3.2287
8 7 3.4638 -2.9030 4.3124
9 6 2.7307 -3.0293 5.4363
10 8 1.5983 -2.5933 5.4744
11 6 3.3111 -3.7055 6.6344
12 8 4.4433 -4.1410 6.5963
13 7 2.5782 -3.8312 7.7584
14 6 3.1479 -4.4941 8.9340
15 6 2.1318 -4.5040 10.0470
16 1 1.1588 -4.0610 9.8937
17 6 2.4440 -5.0793 11.2605
18 7 3.6287 -5.6190 11.4470
19 14 1.1847 -5.0907 12.6401
20 1 -0.0283 -5.8239 12.1970
21 1 1.7618 -5.7639 13.8314
22 1 0.8193 -3.6942 12.9885
23 6 3.2719 -2.5592 1.9303
24 6 2.7821 -1.8356 0.8604
25 17 3.1740 -2.3121 -0.7622
26 1 -0.3634 0.4512 0.9233
27 1 -0.3634 0.5739 -0.8525
28 1 -0.3633 -1.0252 -0.0709
29 1 3.0827 1.3432 -0.0709
30 1 1.5898 1.9163 -0.8524
31 1 1.7043 1.8724 0.9233
32 1 1.0267 0.5111 2.5550
33 1 1.9078 -0.7716 4.4603
34 1 4.3389 -3.3176 4.2551
35 1 1.6734 -3.4828 7.7889
36 1 3.4164 -5.5193 8.6787
37 1 4.0381 -3.9556 9.2591
38 1 3.8484 -6.0234 12.3008
39 1 3.8984 -3.4217 1.7574
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787593858.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:23:49
Heat of formation + Delta-G solvation = -57.173604 kcal
Electronic energy + Delta-G solvation = -24025.965662 eV
Core-core repulsion = 20186.990332 eV
Total energy + Delta-G solvation = -3838.975330 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-42.22633 -40.90798 -39.70156 -37.93525 -37.42434 -36.46746 -35.29400 -34.35897
-31.94493 -30.43017 -29.62369 -28.48029 -26.72920 -25.22442 -24.40192 -23.65720
-22.13803 -21.42532 -20.27241 -18.96461 -18.32764 -17.88377 -17.37854 -17.23917
-16.94561 -16.58701 -16.06815 -15.94189 -15.82781 -15.33126 -15.10738 -14.92888
-14.78016 -14.24476 -14.07955 -14.05326 -13.87516 -13.23341 -13.17439 -13.02105
-12.80866 -12.70723 -12.68459 -12.60493 -12.54234 -12.23065 -11.80122 -11.56175
-11.41076 -10.84237 -10.77633 -10.07682 -9.93854 -9.55024 -9.25340 -8.31710
-6.47920 -0.28535 0.06419 0.41267 1.00740 1.34092 1.44954 1.47144
1.55799 2.00589 2.35297 2.46402 2.62636 2.81981 3.03751 3.38285
3.69414 3.96621 4.04857 4.18209 4.25158 4.42651 4.49621 4.62409
4.65005 4.67957 4.93205 4.98437 5.00623 5.02099 5.10930 5.16720
5.19658 5.23453 5.46297 5.53123 5.76792 5.86769 5.89510 6.20642
6.40903 6.56076 6.68083 6.97089 7.25042 8.79603
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.026896 B = 0.002210 C = 0.002095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1040.814799 B =12666.327043 C =13359.197955
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.513 5.513
3 C 0.027 3.973
4 C 0.081 3.919
5 C -0.112 4.112
6 C -0.116 4.116
7 C 0.144 3.856
8 N -0.634 5.634
9 C 0.524 3.476
10 O -0.512 6.512
11 C 0.494 3.506
12 O -0.556 6.556
13 N -0.671 5.671
14 C 0.263 3.737
15 C -0.563 4.563
16 H 0.080 0.920
17 C 0.011 3.989
18 N -0.925 5.925
19 Si 0.981 3.019
20 H -0.264 1.264
21 H -0.283 1.283
22 H -0.264 1.264
23 C -0.124 4.124
24 C -0.004 4.004
25 Cl -0.046 7.046
26 H 0.037 0.963
27 H 0.091 0.909
28 H 0.063 0.937
29 H 0.066 0.934
30 H 0.090 0.910
31 H 0.037 0.963
32 H 0.150 0.850
33 H 0.132 0.868
34 H 0.433 0.567
35 H 0.414 0.586
36 H 0.006 0.994
37 H 0.006 0.994
38 H 0.271 0.729
39 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.503 12.927 -24.626 28.175
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.235 5.235
3 C -0.119 4.119
4 C -0.014 4.014
5 C -0.133 4.133
6 C -0.137 4.137
7 C 0.050 3.950
8 N -0.281 5.281
9 C 0.306 3.694
10 O -0.387 6.387
11 C 0.274 3.726
12 O -0.436 6.436
13 N -0.321 5.321
14 C 0.141 3.859
15 C -0.600 4.600
16 H 0.098 0.902
17 C -0.190 4.190
18 N -0.563 5.563
19 Si 0.804 3.196
20 H -0.189 1.189
21 H -0.208 1.208
22 H -0.188 1.188
23 C -0.146 4.146
24 C -0.032 4.032
25 Cl -0.017 7.017
26 H 0.056 0.944
27 H 0.110 0.890
28 H 0.081 0.919
29 H 0.085 0.915
30 H 0.109 0.891
31 H 0.056 0.944
32 H 0.167 0.833
33 H 0.149 0.851
34 H 0.273 0.727
35 H 0.250 0.750
36 H 0.024 0.976
37 H 0.024 0.976
38 H 0.080 0.920
39 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -4.201 12.557 -25.006 28.296
hybrid contribution -0.332 -0.087 1.573 1.610
sum -4.533 12.470 -23.434 26.929
Atomic orbital electron populations
1.22520 0.84623 1.02819 1.02033 1.59699 1.09506 1.15115 1.39135
1.22517 1.00947 0.86402 1.02007 1.18682 0.97889 0.94999 0.89863
1.21541 1.00070 1.00451 0.91201 1.21186 0.98220 0.93579 1.00665
1.17665 0.98814 0.92307 0.86212 1.43068 1.21911 1.51323 1.11822
1.20077 0.85350 0.79882 0.84108 1.90760 1.17759 1.47270 1.82882
1.20117 0.86130 0.81541 0.84800 1.90733 1.19096 1.49949 1.83783
1.46151 1.18275 1.55598 1.12117 1.18839 0.94257 0.91340 0.81421
1.21535 1.00843 1.40076 0.97596 0.90181 1.25951 0.97761 0.93899
1.01370 1.70086 1.22366 1.37774 1.26047 0.85256 0.78285 0.78950
0.77063 1.18906 1.20832 1.18841 1.20847 1.03562 1.01387 0.88764
1.20609 0.99820 0.96145 0.86627 1.98368 1.92570 1.90954 1.19766
0.94407 0.88991 0.91853 0.91544 0.89097 0.94398 0.83268 0.85062
0.72709 0.74976 0.97627 0.97590 0.92037 0.82381
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.32 9.35 127.69 1.19 1.52 16
2 N -0.51 -7.81 4.38 -744.79 -3.26 -11.07 16
3 C 0.03 0.31 9.39 127.69 1.20 1.51 16
4 C 0.08 1.49 4.74 38.19 0.18 1.67 16
5 C -0.11 -2.06 8.57 22.38 0.19 -1.87 16
6 C -0.12 -2.61 8.65 22.39 0.19 -2.42 16
7 C 0.14 3.27 6.28 38.19 0.24 3.51 16
8 N -0.63 -15.76 5.33 -304.73 -1.62 -17.38 16
9 C 0.52 16.44 7.62 87.23 0.66 17.10 16
10 O -0.51 -17.07 14.16 -3.40 -0.05 -17.12 16
11 C 0.49 19.13 7.88 87.23 0.69 19.82 16
12 O -0.56 -24.08 16.48 -3.30 -0.05 -24.13 16
13 N -0.67 -28.42 5.54 -468.28 -2.59 -31.01 16
14 C 0.26 13.77 5.43 85.63 0.46 14.23 16
15 C -0.56 -29.96 9.28 25.60 0.24 -29.72 16
16 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16
17 C 0.01 0.58 5.46 84.66 0.46 1.04 16
18 N -0.92 -53.67 13.29 21.45 0.28 -53.39 16
19 Si 0.98 41.58 29.54 68.60 2.03 43.61 16
20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16
21 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16
22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16
23 C -0.12 -2.41 9.74 22.41 0.22 -2.19 16
24 C 0.00 -0.07 6.33 22.43 0.14 0.07 16
25 Cl -0.05 -0.84 28.43 -2.72 -0.08 -0.92 16
26 H 0.04 0.43 7.12 -2.39 -0.02 0.41 16
27 H 0.09 0.80 8.12 -2.39 -0.02 0.78 16
28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16
30 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16
31 H 0.04 0.39 7.34 -2.39 -0.02 0.38 16
32 H 0.15 2.17 7.01 -2.91 -0.02 2.15 16
33 H 0.13 3.29 6.41 -2.91 -0.02 3.27 16
34 H 0.43 9.42 8.30 -92.71 -0.77 8.65 16
35 H 0.41 15.90 7.79 -92.70 -0.72 15.18 16
36 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16
37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
38 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16
39 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16
Total: -1.00 -64.44 353.91 0.35 -64.09
By element:
Atomic # 1 Polarization: 23.43 SS G_CDS: -0.38 Total: 23.05 kcal
Atomic # 6 Polarization: 18.20 SS G_CDS: 6.07 Total: 24.27 kcal
Atomic # 7 Polarization: -105.66 SS G_CDS: -7.20 Total: -112.85 kcal
Atomic # 8 Polarization: -41.15 SS G_CDS: -0.10 Total: -41.25 kcal
Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal
Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal
Total: -64.44 0.35 -64.09 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787593858.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.913 kcal
(2) G-P(sol) polarization free energy of solvation -64.435 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.522 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds