Wall clock time and date at job start Tue Mar 31 2020 14:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 S 2.04995 * 102.99776 * 2 1 4 4 C 1.81402 * 103.00033 * 85.00271 * 3 2 1 5 5 C 1.53005 * 109.47054 * 69.99828 * 4 3 2 6 6 N 1.46502 * 109.46864 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99559 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00046 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99686 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.46990 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46934 * 305.97546 * 10 9 7 12 12 C 1.50700 * 109.47299 * 65.97885 * 10 9 7 13 13 H 1.08008 * 119.99531 * 26.90748 * 12 10 9 14 14 C 1.37869 * 120.00160 * 206.90965 * 12 10 9 15 15 N 1.31508 * 120.00032 * 353.27812 * 14 12 10 16 16 Si 1.86806 * 120.00073 * 173.54969 * 14 12 10 17 17 H 1.48497 * 109.46895 * 179.72442 * 16 14 12 18 18 H 1.48495 * 109.46957 * 299.72695 * 16 14 12 19 19 H 1.48501 * 109.46761 * 59.72686 * 16 14 12 20 20 C 1.50705 * 109.47056 * 185.97689 * 10 9 7 21 21 C 1.38237 * 120.00118 * 294.44966 * 20 10 9 22 22 C 1.38237 * 119.99818 * 179.78603 * 21 20 10 23 23 C 1.38236 * 120.00003 * 0.44191 * 22 21 20 24 24 C 1.38236 * 119.99991 * 359.81061 * 23 22 21 25 25 C 1.38228 * 119.99825 * 114.71859 * 20 10 9 26 26 H 1.09007 * 109.47087 * 299.99898 * 1 2 3 27 27 H 1.08991 * 109.47581 * 59.99434 * 1 2 3 28 28 H 1.09005 * 109.46978 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46952 * 309.99944 * 4 3 2 30 30 H 1.09005 * 109.47060 * 189.99768 * 4 3 2 31 31 H 1.08998 * 109.47146 * 60.00235 * 5 4 3 32 32 H 1.08995 * 109.46642 * 299.99862 * 5 4 3 33 33 H 0.97002 * 120.00062 * 0.02562 * 6 5 4 34 34 H 1.09000 * 109.47229 * 60.00363 * 9 7 6 35 35 H 1.09003 * 109.47630 * 300.00294 * 9 7 6 36 36 H 0.97008 * 120.00303 * 354.69126 * 15 14 12 37 37 H 1.08005 * 119.99967 * 359.97438 * 21 20 10 38 38 H 1.07999 * 119.99448 * 180.27078 * 22 21 20 39 39 H 1.07997 * 119.99991 * 179.83259 * 23 22 21 40 40 H 1.07993 * 119.99965 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.00249 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 16 2.2751 1.9974 0.0000 4 6 2.2168 2.4297 1.7608 5 6 3.3987 1.7812 2.4845 6 7 3.3520 2.1308 3.9064 7 6 4.2996 1.6680 4.7456 8 8 5.1913 0.9625 4.3235 9 6 4.2513 2.0271 6.2083 10 6 5.4332 1.3788 6.9320 11 1 5.4370 0.3070 6.7337 12 6 6.7202 1.9860 6.4362 13 1 6.7269 2.9929 6.0453 14 6 7.8892 1.2564 6.4815 15 7 7.9097 0.0838 7.0765 16 14 9.4457 1.9368 5.7045 17 1 10.5568 0.9700 5.8938 18 1 9.2202 2.1538 4.2529 19 1 9.7973 3.2275 6.3492 20 6 5.3050 1.6148 8.4149 21 6 5.3929 2.8983 8.9207 22 6 5.2709 3.1151 10.2805 23 6 5.0700 2.0476 11.1354 24 6 4.9874 0.7635 10.6302 25 6 5.1050 0.5472 9.2699 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 1.2836 2.0684 2.1929 30 1 2.2731 3.5127 1.8711 31 1 4.3319 2.1425 2.0524 32 1 3.3423 0.6983 2.3741 33 1 2.6386 2.6948 4.2440 34 1 3.3179 1.6662 6.6404 35 1 4.3079 3.1101 6.3188 36 1 7.1247 -0.2339 7.5498 37 1 5.5539 3.7319 8.2532 38 1 5.3352 4.1184 10.6752 39 1 4.9774 2.2167 12.1981 40 1 4.8301 -0.0704 11.2980 41 1 5.0403 -0.4560 8.8752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791100749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:59 Heat of formation + Delta-G solvation = -21.909959 kcal Electronic energy + Delta-G solvation = -22385.718383 eV Core-core repulsion = 19096.609120 eV Total energy + Delta-G solvation = -3289.109263 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.22695 -38.31877 -35.21450 -34.12722 -31.47887 -30.67542 -30.11893 -29.40051 -28.73009 -25.20769 -23.39790 -22.51541 -21.66610 -20.38983 -19.60499 -19.22013 -16.97439 -16.47407 -16.11356 -15.89383 -15.64267 -15.40356 -14.62261 -14.36364 -14.18184 -14.03805 -13.76495 -13.62586 -13.38188 -13.13426 -12.83008 -12.48983 -12.38255 -12.28381 -11.98534 -11.89023 -11.78415 -11.43001 -10.91082 -10.70434 -10.60631 -10.44142 -10.13389 -10.02478 -9.68781 -9.10603 -8.75301 -8.66899 -8.59880 -8.43543 -8.26343 -8.14923 -7.64463 -6.21385 -3.90589 -0.95158 1.34878 1.72498 2.17998 2.23637 3.44158 3.51500 3.57709 3.69571 3.73089 4.48612 4.53353 4.60825 4.66704 4.68552 4.70729 5.06379 5.27036 5.40525 5.58703 5.61123 5.62523 5.70902 5.75242 5.94846 5.98760 6.06665 6.15826 6.30735 6.40971 6.66747 6.75849 6.78039 6.91946 7.20063 7.21900 7.37111 7.72321 7.84808 7.95510 8.22932 8.52166 8.95777 8.99565 9.78392 11.18109 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.002992 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.694663 B = 9355.504085 C =10531.758930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.138 6.138 3 S -0.129 6.129 4 C -0.114 4.114 5 C 0.124 3.876 6 N -0.750 5.750 7 C 0.513 3.487 8 O -0.494 6.494 9 C -0.115 4.115 10 C 0.073 3.927 11 H 0.050 0.950 12 C -0.568 4.568 13 H 0.045 0.955 14 C 0.033 3.967 15 N -0.906 5.906 16 Si 1.059 2.941 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.291 1.291 20 C -0.033 4.033 21 C -0.107 4.107 22 C -0.130 4.130 23 C -0.152 4.152 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.392 0.608 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.271 0.729 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.373 4.695 -7.235 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S -0.020 6.020 3 S -0.009 6.009 4 C -0.269 4.269 5 C -0.002 4.002 6 N -0.407 5.407 7 C 0.299 3.701 8 O -0.365 6.365 9 C -0.156 4.156 10 C 0.053 3.947 11 H 0.068 0.932 12 C -0.606 4.606 13 H 0.063 0.937 14 C -0.173 4.173 15 N -0.541 5.541 16 Si 0.888 3.112 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.217 1.217 20 C -0.034 4.034 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.171 4.171 24 C -0.143 4.143 25 C -0.148 4.148 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.112 0.888 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.225 0.775 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.130 3.546 -8.834 17.038 hybrid contribution -2.983 1.017 1.573 3.523 sum -17.114 4.564 -7.261 19.142 Atomic orbital electron populations 1.24042 0.94513 1.06933 1.05836 1.89693 1.09996 1.07478 1.94801 1.89399 1.88508 1.11423 1.11604 1.24230 1.02559 1.05534 0.94527 1.21511 0.96848 1.00233 0.81584 1.46210 1.30953 1.55722 1.07815 1.20895 0.80649 0.79868 0.88688 1.90769 1.32965 1.35103 1.77643 1.21664 1.00630 1.02197 0.91066 1.17866 0.93039 0.98020 0.85728 0.93228 1.21527 0.92855 1.01836 1.44371 0.93680 1.25570 1.01529 0.94607 0.95584 1.70735 1.33116 1.18824 1.31393 0.83696 0.75957 0.75225 0.76277 1.20910 1.21455 1.21732 1.20855 0.91600 0.92236 0.98662 1.20927 0.99835 0.97425 0.94278 1.21018 1.01750 0.98005 0.94065 1.20827 1.04484 0.93198 0.98548 1.20967 1.01549 0.96384 0.95384 1.21078 1.01721 0.98849 0.93198 0.89882 0.89418 0.87115 0.88768 0.86173 0.90578 0.90963 0.77456 0.91631 0.90218 0.91795 0.86682 0.87450 0.87583 0.87447 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 10.76 101.05 1.09 0.19 16 2 S -0.14 -1.44 22.43 -89.68 -2.01 -3.46 16 3 S -0.13 -1.33 22.25 -89.68 -2.00 -3.33 16 4 C -0.11 -1.04 6.06 37.16 0.23 -0.81 16 5 C 0.12 1.65 5.63 -4.04 -0.02 1.63 16 6 N -0.75 -10.59 5.56 -60.29 -0.33 -10.92 16 7 C 0.51 10.08 7.58 -10.99 -0.08 10.00 16 8 O -0.49 -12.44 15.02 5.55 0.08 -12.35 16 9 C -0.12 -2.19 4.95 -27.88 -0.14 -2.33 16 10 C 0.07 1.73 1.23 -92.92 -0.11 1.62 16 11 H 0.05 1.34 6.59 -51.93 -0.34 1.00 16 12 C -0.57 -15.48 6.35 -34.44 -0.22 -15.70 16 13 H 0.04 1.23 7.82 -52.48 -0.41 0.82 16 14 C 0.03 0.95 5.45 -17.83 -0.10 0.85 16 15 N -0.91 -27.81 13.56 55.43 0.75 -27.06 16 16 Si 1.06 26.44 29.91 -169.99 -5.08 21.36 16 17 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.03 -0.72 4.53 -104.62 -0.47 -1.20 16 21 C -0.11 -2.16 8.90 -39.58 -0.35 -2.52 16 22 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 23 C -0.15 -2.63 10.05 -39.58 -0.40 -3.03 16 24 C -0.12 -2.28 10.05 -39.58 -0.40 -2.67 16 25 C -0.13 -2.71 9.18 -39.58 -0.36 -3.07 16 26 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.11 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.09 7.74 -51.93 -0.40 0.69 16 33 H 0.39 4.06 8.47 -40.82 -0.35 3.72 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.40 7.96 -51.93 -0.41 0.99 16 36 H 0.27 8.17 6.24 -40.82 -0.25 7.92 16 37 H 0.12 2.28 7.85 -52.48 -0.41 1.87 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.11 2.27 7.95 -52.49 -0.42 1.85 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -34.21 372.60 -10.74 -44.96 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.02 Total: 4.96 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -1.75 Total: -19.77 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.42 Total: -37.98 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -5.08 Total: 21.36 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -4.01 Total: -6.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.21 -10.74 -44.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791100749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.048 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds