Wall clock time and date at job start Tue Mar 31 2020 14:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 S 2.04995 * 102.99776 * 2 1 4 4 C 1.81402 * 103.00033 * 85.00271 * 3 2 1 5 5 C 1.53005 * 109.47054 * 69.99828 * 4 3 2 6 6 N 1.46502 * 109.46864 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99559 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00046 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99686 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.46990 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46934 * 305.97546 * 10 9 7 12 12 C 1.50700 * 109.47299 * 65.97885 * 10 9 7 13 13 H 1.08008 * 119.99531 * 26.90748 * 12 10 9 14 14 C 1.37869 * 120.00160 * 206.90965 * 12 10 9 15 15 N 1.31508 * 120.00032 * 353.27812 * 14 12 10 16 16 Si 1.86806 * 120.00073 * 173.54969 * 14 12 10 17 17 H 1.48497 * 109.46895 * 179.72442 * 16 14 12 18 18 H 1.48495 * 109.46957 * 299.72695 * 16 14 12 19 19 H 1.48501 * 109.46761 * 59.72686 * 16 14 12 20 20 C 1.50705 * 109.47056 * 185.97689 * 10 9 7 21 21 C 1.38237 * 120.00118 * 294.44966 * 20 10 9 22 22 C 1.38237 * 119.99818 * 179.78603 * 21 20 10 23 23 C 1.38236 * 120.00003 * 0.44191 * 22 21 20 24 24 C 1.38236 * 119.99991 * 359.81061 * 23 22 21 25 25 C 1.38228 * 119.99825 * 114.71859 * 20 10 9 26 26 H 1.09007 * 109.47087 * 299.99898 * 1 2 3 27 27 H 1.08991 * 109.47581 * 59.99434 * 1 2 3 28 28 H 1.09005 * 109.46978 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46952 * 309.99944 * 4 3 2 30 30 H 1.09005 * 109.47060 * 189.99768 * 4 3 2 31 31 H 1.08998 * 109.47146 * 60.00235 * 5 4 3 32 32 H 1.08995 * 109.46642 * 299.99862 * 5 4 3 33 33 H 0.97002 * 120.00062 * 0.02562 * 6 5 4 34 34 H 1.09000 * 109.47229 * 60.00363 * 9 7 6 35 35 H 1.09003 * 109.47630 * 300.00294 * 9 7 6 36 36 H 0.97008 * 120.00303 * 354.69126 * 15 14 12 37 37 H 1.08005 * 119.99967 * 359.97438 * 21 20 10 38 38 H 1.07999 * 119.99448 * 180.27078 * 22 21 20 39 39 H 1.07997 * 119.99991 * 179.83259 * 23 22 21 40 40 H 1.07993 * 119.99965 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.00249 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 16 2.2751 1.9974 0.0000 4 6 2.2168 2.4297 1.7608 5 6 3.3987 1.7812 2.4845 6 7 3.3520 2.1308 3.9064 7 6 4.2996 1.6680 4.7456 8 8 5.1913 0.9625 4.3235 9 6 4.2513 2.0271 6.2083 10 6 5.4332 1.3788 6.9320 11 1 5.4370 0.3070 6.7337 12 6 6.7202 1.9860 6.4362 13 1 6.7269 2.9929 6.0453 14 6 7.8892 1.2564 6.4815 15 7 7.9097 0.0838 7.0765 16 14 9.4457 1.9368 5.7045 17 1 10.5568 0.9700 5.8938 18 1 9.2202 2.1538 4.2529 19 1 9.7973 3.2275 6.3492 20 6 5.3050 1.6148 8.4149 21 6 5.3929 2.8983 8.9207 22 6 5.2709 3.1151 10.2805 23 6 5.0700 2.0476 11.1354 24 6 4.9874 0.7635 10.6302 25 6 5.1050 0.5472 9.2699 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 1.2836 2.0684 2.1929 30 1 2.2731 3.5127 1.8711 31 1 4.3319 2.1425 2.0524 32 1 3.3423 0.6983 2.3741 33 1 2.6386 2.6948 4.2440 34 1 3.3179 1.6662 6.6404 35 1 4.3079 3.1101 6.3188 36 1 7.1247 -0.2339 7.5498 37 1 5.5539 3.7319 8.2532 38 1 5.3352 4.1184 10.6752 39 1 4.9774 2.2167 12.1981 40 1 4.8301 -0.0704 11.2980 41 1 5.0403 -0.4560 8.8752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791100749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:59 Heat of formation + Delta-G solvation = -41.906521 kcal Electronic energy + Delta-G solvation = -22386.585499 eV Core-core repulsion = 19096.609120 eV Total energy + Delta-G solvation = -3289.976379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80462 -39.82976 -36.62281 -35.88316 -33.35568 -31.96997 -31.60030 -30.18885 -29.91554 -27.04496 -25.00756 -23.83918 -23.17195 -21.89269 -21.20434 -20.08585 -18.85241 -18.03646 -17.28815 -17.22170 -16.82965 -16.48891 -16.12842 -15.67362 -15.65220 -15.43701 -15.01901 -14.69426 -14.61674 -14.37073 -14.07125 -13.99446 -13.93325 -13.47277 -13.27327 -13.20961 -12.99445 -12.71906 -12.63438 -12.58230 -12.07845 -11.95639 -11.71577 -11.50288 -11.36132 -10.80486 -10.58758 -10.37297 -10.07179 -9.63830 -9.44617 -9.29579 -9.24382 -8.44074 -6.11099 -1.75104 0.60360 0.68147 0.74374 1.08273 1.47648 1.58246 1.73741 1.87198 2.41290 2.62309 3.11058 3.36865 3.55273 3.77135 4.09615 4.13831 4.19320 4.25466 4.28303 4.29764 4.30342 4.44363 4.48879 4.60515 4.64949 4.77404 4.80986 4.84186 4.88093 5.10594 5.23906 5.40914 5.43187 5.48525 5.75081 5.82591 5.95065 6.24380 6.31453 6.41122 6.68641 6.78780 7.50036 7.64316 8.96309 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.002992 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.694663 B = 9355.504085 C =10531.758930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.199 6.199 3 S -0.139 6.139 4 C -0.097 4.097 5 C 0.126 3.874 6 N -0.723 5.723 7 C 0.510 3.490 8 O -0.561 6.561 9 C -0.109 4.109 10 C 0.074 3.926 11 H 0.003 0.997 12 C -0.558 4.558 13 H 0.040 0.960 14 C -0.025 4.025 15 N -0.944 5.944 16 Si 1.095 2.905 17 H -0.289 1.289 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.056 4.056 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.125 4.125 25 C -0.153 4.153 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.416 0.584 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.261 0.739 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.744 7.216 -5.828 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.080 6.080 3 S -0.019 6.019 4 C -0.252 4.252 5 C 0.000 4.000 6 N -0.380 5.380 7 C 0.297 3.703 8 O -0.438 6.438 9 C -0.149 4.149 10 C 0.054 3.946 11 H 0.021 0.979 12 C -0.596 4.596 13 H 0.058 0.942 14 C -0.223 4.223 15 N -0.583 5.583 16 Si 0.920 3.080 17 H -0.215 1.215 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.056 4.056 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.162 4.162 24 C -0.143 4.143 25 C -0.172 4.172 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.163 0.837 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.581 6.125 -7.434 19.176 hybrid contribution -2.411 0.238 1.157 2.685 sum -18.992 6.363 -6.277 20.990 Atomic orbital electron populations 1.24089 0.90003 1.08213 1.07091 1.89848 1.14736 1.08414 1.95048 1.89403 1.89477 1.10688 1.12350 1.24157 1.01317 1.06513 0.93186 1.21486 0.98014 0.99475 0.81016 1.45862 1.29941 1.54394 1.07762 1.21069 0.80608 0.79101 0.89474 1.90751 1.36012 1.38298 1.78697 1.21568 1.00003 1.02944 0.90422 1.17691 0.93611 0.95257 0.88002 0.97907 1.21808 0.94047 1.01189 1.42525 0.94160 1.26700 1.04699 0.94734 0.96169 1.70814 1.32991 1.20416 1.34038 0.83235 0.73296 0.75699 0.75816 1.21486 1.21366 1.18991 1.20620 0.94099 0.93660 0.97255 1.21016 1.00705 0.96409 0.95842 1.21413 0.99874 1.00072 0.92893 1.21310 1.02128 0.92211 1.00545 1.21298 1.00423 0.98243 0.94365 1.21131 1.03275 0.97986 0.94767 0.88538 0.88228 0.85634 0.86295 0.83713 0.92901 0.92985 0.74670 0.88663 0.88191 0.92892 0.86702 0.83923 0.83575 0.84752 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 10.76 113.37 1.22 -0.08 16 2 S -0.20 -4.11 22.43 -20.03 -0.45 -4.56 16 3 S -0.14 -2.74 22.25 -20.03 -0.45 -3.19 16 4 C -0.10 -1.57 6.06 71.98 0.44 -1.14 16 5 C 0.13 3.34 5.63 86.38 0.49 3.83 16 6 N -0.72 -19.68 5.56 -463.05 -2.57 -22.26 16 7 C 0.51 20.39 7.58 87.66 0.66 21.06 16 8 O -0.56 -29.79 15.02 -3.04 -0.05 -29.83 16 9 C -0.11 -4.14 4.95 29.85 0.15 -3.99 16 10 C 0.07 3.64 1.23 -12.28 -0.02 3.62 16 11 H 0.00 0.16 6.59 -2.39 -0.02 0.14 16 12 C -0.56 -31.29 6.35 25.60 0.16 -31.13 16 13 H 0.04 2.23 7.82 -2.91 -0.02 2.21 16 14 C -0.02 -1.48 5.45 84.65 0.46 -1.01 16 15 N -0.94 -60.90 13.56 21.44 0.29 -60.61 16 16 Si 1.09 54.69 29.91 68.60 2.05 56.75 16 17 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 18 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 20 C -0.06 -2.48 4.53 -19.87 -0.09 -2.57 16 21 C -0.12 -4.76 8.90 22.27 0.20 -4.56 16 22 C -0.12 -4.02 10.05 22.27 0.22 -3.80 16 23 C -0.14 -4.40 10.05 22.27 0.22 -4.18 16 24 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 25 C -0.15 -6.47 9.18 22.27 0.20 -6.27 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.15 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.62 7.74 -2.39 -0.02 1.60 16 33 H 0.42 7.45 8.47 -92.71 -0.79 6.66 16 34 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.10 3.37 7.96 -2.39 -0.02 3.35 16 36 H 0.26 16.77 6.24 -92.70 -0.58 16.19 16 37 H 0.11 4.39 7.85 -2.91 -0.02 4.37 16 38 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 41 H 0.09 4.15 7.95 -2.91 -0.02 4.13 16 Total: -1.00 -80.71 372.60 3.80 -76.90 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.43 Total: 21.11 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 4.55 Total: -34.31 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.28 Total: -82.87 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.05 Total: -29.83 kcal Atomic # 14 Polarization: 54.69 SS G_CDS: 2.05 Total: 56.75 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -0.90 Total: -7.75 kcal Total: -80.71 3.80 -76.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791100749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.997 kcal (2) G-P(sol) polarization free energy of solvation -80.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds