Wall clock time and date at job start Tue Mar 31 2020 13:45:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.46868 * 2 1
4 4 N 1.46499 * 109.47306 * 119.99893 * 2 1 3
5 5 C 1.46503 * 119.99876 * 123.37113 * 4 2 1
6 6 C 1.50696 * 109.47506 * 262.77613 * 5 4 2
7 7 H 1.08003 * 119.99686 * 359.97438 * 6 5 4
8 8 C 1.37876 * 120.00338 * 180.02562 * 6 5 4
9 9 N 1.31522 * 119.99583 * 359.97438 * 8 6 5
10 10 Si 1.86796 * 120.00214 * 180.02562 * 8 6 5
11 11 H 1.48493 * 109.47396 * 89.99570 * 10 8 6
12 12 H 1.48501 * 109.47010 * 209.99743 * 10 8 6
13 13 H 1.48494 * 109.47023 * 329.99446 * 10 8 6
14 14 C 1.34769 * 119.99988 * 303.37919 * 4 2 1
15 15 O 1.21361 * 120.00421 * 3.59155 * 14 4 2
16 16 C 1.49370 * 120.00163 * 183.59826 * 14 4 2
17 17 O 1.21362 * 119.99612 * 354.61395 * 16 14 4
18 18 N 1.34776 * 120.00022 * 174.89367 * 16 14 4
19 19 C 1.39253 * 119.99788 * 184.84360 * 18 16 14
20 20 C 1.39045 * 119.68896 * 185.36537 * 19 18 16
21 21 C 1.38397 * 119.12451 * 179.79405 * 20 19 18
22 22 C 1.38769 * 118.51401 * 0.46249 * 21 20 19
23 23 C 1.38275 * 119.30589 * 359.75759 * 22 21 20
24 24 Cl 1.73601 * 119.59235 * 179.97438 * 23 22 21
25 25 N 1.32009 * 120.81703 * 0.02562 * 23 22 21
26 26 H 1.08995 * 109.47373 * 305.69849 * 1 2 3
27 27 H 1.09000 * 109.47487 * 65.70471 * 1 2 3
28 28 H 1.09008 * 109.47225 * 185.70111 * 1 2 3
29 29 H 1.08996 * 109.47001 * 239.99932 * 2 1 3
30 30 H 1.08997 * 109.46852 * 184.90237 * 3 2 1
31 31 H 1.08997 * 109.46887 * 304.89622 * 3 2 1
32 32 H 1.08997 * 109.46708 * 64.89867 * 3 2 1
33 33 H 1.09001 * 109.46775 * 22.77763 * 5 4 2
34 34 H 1.08998 * 109.46893 * 142.77387 * 5 4 2
35 35 H 0.97004 * 119.99308 * 180.02562 * 9 8 6
36 36 H 0.96991 * 120.00298 * 4.84092 * 18 16 14
37 37 H 1.08001 * 120.43787 * 0.02562 * 20 19 18
38 38 H 1.08005 * 120.74273 * 180.22286 * 21 20 19
39 39 H 1.08000 * 120.35086 * 179.77221 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0184 -0.6906 1.1962
5 6 2.9205 -1.8372 1.0630
6 6 2.1254 -3.1145 1.1473
7 1 1.0551 -3.0761 1.2866
8 6 2.7644 -4.3322 1.0477
9 7 4.0679 -4.3789 0.8785
10 14 1.7787 -5.9155 1.1515
11 1 1.3390 -6.3151 -0.2094
12 1 2.6250 -6.9882 1.7331
13 1 0.5885 -5.7020 2.0134
14 6 1.6376 -0.2712 2.4190
15 8 0.8395 0.6365 2.5280
16 6 2.1981 -0.9234 3.6403
17 8 2.9197 -1.8933 3.5333
18 7 1.8978 -0.4383 4.8614
19 6 2.4990 -0.9820 5.9937
20 6 2.1030 -0.5545 7.2562
21 6 2.7052 -1.1058 8.3736
22 6 3.6936 -2.0623 8.1895
23 6 4.0416 -2.4374 6.9049
24 17 5.2776 -3.6328 6.6659
25 7 3.4462 -1.8970 5.8579
26 1 -0.3634 0.5996 0.8345
27 1 -0.3634 0.4228 -0.9366
28 1 -0.3634 -1.0226 0.1021
29 1 1.8933 -0.5138 -0.8899
30 1 3.1264 1.4438 -0.0878
31 1 1.6067 1.9810 -0.8429
32 1 1.7500 1.9303 0.9306
33 1 3.4296 -1.7889 0.1004
34 1 3.6578 -1.8145 1.8655
35 1 4.5173 -5.2356 0.8080
36 1 1.2631 0.2895 4.9515
37 1 1.3328 0.1950 7.3634
38 1 2.4152 -0.7957 9.3667
39 1 4.1858 -2.5092 9.0406
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000793041856.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:45:39
Heat of formation + Delta-G solvation = -5.564481 kcal
Electronic energy + Delta-G solvation = -25831.892075 eV
Core-core repulsion = 21995.154684 eV
Total energy + Delta-G solvation = -3836.737391 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.86056 -39.78153 -38.00267 -36.48969 -35.84183 -34.47788 -32.94806 -32.49665
-31.34871 -29.98139 -27.00741 -26.73321 -25.19552 -23.77004 -23.12879 -22.41433
-21.04796 -19.19106 -17.93304 -17.02364 -16.58082 -16.32369 -15.91295 -15.57784
-15.30428 -15.01144 -14.74971 -14.44616 -14.21772 -13.82234 -13.40091 -13.32227
-13.12560 -12.70951 -12.31582 -12.20533 -11.82794 -11.79846 -11.54739 -11.50890
-11.09707 -11.03416 -10.92278 -10.81925 -10.75490 -10.51390 -10.18491 -9.78348
-9.71829 -9.61262 -9.49264 -8.55617 -8.23066 -8.18071 -7.78909 -5.97657
-4.00160 0.88799 1.18027 1.91622 2.21038 2.70739 3.33829 3.40830
3.44013 3.60960 3.91640 4.03580 4.46084 4.52354 4.81107 4.86315
4.97325 5.14617 5.19570 5.39044 5.41828 5.57797 5.69382 5.72365
5.97527 5.99946 6.07932 6.11046 6.25111 6.33737 6.58148 6.65623
6.70927 6.83376 7.11275 7.44797 7.47894 7.90470 7.92686 8.14913
8.24162 8.42030 8.69787 9.00710 9.62756 11.11160
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.009987 B = 0.005469 C = 0.003938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2803.096510 B = 5118.714916 C = 7108.010469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.143 3.857
3 C -0.165 4.165
4 N -0.552 5.552
5 C 0.221 3.779
6 C -0.519 4.519
7 H 0.053 0.947
8 C 0.072 3.928
9 N -0.886 5.886
10 Si 0.892 3.108
11 H -0.282 1.282
12 H -0.285 1.285
13 H -0.276 1.276
14 C 0.512 3.488
15 O -0.559 6.559
16 C 0.474 3.526
17 O -0.377 6.377
18 N -0.649 5.649
19 C 0.394 3.606
20 C -0.212 4.212
21 C -0.035 4.035
22 C -0.199 4.199
23 C 0.215 3.785
24 Cl -0.026 7.026
25 N -0.471 5.471
26 H 0.078 0.922
27 H 0.054 0.946
28 H 0.057 0.943
29 H 0.090 0.910
30 H 0.052 0.948
31 H 0.060 0.940
32 H 0.069 0.931
33 H 0.031 0.969
34 H 0.075 0.925
35 H 0.262 0.738
36 H 0.424 0.576
37 H 0.143 0.857
38 H 0.146 0.854
39 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.426 9.525 11.955 15.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.039 3.961
3 C -0.223 4.223
4 N -0.282 5.282
5 C 0.102 3.898
6 C -0.557 4.557
7 H 0.071 0.929
8 C -0.131 4.131
9 N -0.524 5.524
10 Si 0.720 3.280
11 H -0.208 1.208
12 H -0.211 1.211
13 H -0.201 1.201
14 C 0.294 3.706
15 O -0.441 6.441
16 C 0.253 3.747
17 O -0.237 6.237
18 N -0.299 5.299
19 C 0.162 3.838
20 C -0.236 4.236
21 C -0.061 4.061
22 C -0.222 4.222
23 C 0.049 3.951
24 Cl 0.002 6.998
25 N -0.188 5.188
26 H 0.097 0.903
27 H 0.073 0.927
28 H 0.076 0.924
29 H 0.108 0.892
30 H 0.072 0.928
31 H 0.079 0.921
32 H 0.088 0.912
33 H 0.049 0.951
34 H 0.092 0.908
35 H 0.071 0.929
36 H 0.263 0.737
37 H 0.161 0.839
38 H 0.164 0.836
39 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -1.758 8.743 10.816 14.018
hybrid contribution -0.909 -0.666 0.759 1.359
sum -2.667 8.076 11.575 14.364
Atomic orbital electron populations
1.22203 0.95096 1.02851 1.02272 1.21062 0.94700 0.92512 0.87784
1.22170 1.00850 0.96438 1.02814 1.48401 1.45364 1.31118 1.03335
1.20144 0.89263 0.80951 0.99409 1.21173 0.93606 0.90321 1.50622
0.92895 1.24787 0.94745 0.98696 0.94897 1.69916 1.07726 1.25611
1.49158 0.86602 0.80036 0.83425 0.77943 1.20787 1.21120 1.20140
1.19635 0.82730 0.83488 0.84726 1.90583 1.35235 1.31431 1.86856
1.20700 0.83970 0.85872 0.84136 1.91058 1.28654 1.20038 1.83999
1.43485 1.44622 1.37830 1.03917 1.18212 0.89441 0.89991 0.86173
1.21531 1.05213 1.05755 0.91088 1.21269 0.92858 0.93061 0.98923
1.21683 1.01996 1.02128 0.96369 1.21450 0.92146 0.92540 0.89008
1.98424 1.50284 1.53405 1.97669 1.66866 1.08602 1.09967 1.33360
0.90341 0.92730 0.92350 0.89151 0.92849 0.92088 0.91207 0.95083
0.90799 0.92864 0.73727 0.83917 0.83632 0.83936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.78 8.94 37.16 0.33 -2.45 16
2 C 0.14 2.55 3.27 -67.93 -0.22 2.33 16
3 C -0.16 -2.51 9.23 37.16 0.34 -2.17 16
4 N -0.55 -11.74 2.43 -168.01 -0.41 -12.15 16
5 C 0.22 5.59 4.76 -5.19 -0.02 5.56 16
6 C -0.52 -14.40 8.28 -34.44 -0.29 -14.68 16
7 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16
8 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16
9 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16
10 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16
11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
14 C 0.51 10.50 7.05 -11.63 -0.08 10.42 16
15 O -0.56 -10.85 12.79 5.49 0.07 -10.78 16
16 C 0.47 9.81 7.71 -11.62 -0.09 9.72 16
17 O -0.38 -9.35 10.65 5.49 0.06 -9.29 16
18 N -0.65 -10.53 5.38 -11.86 -0.06 -10.59 16
19 C 0.39 6.24 7.40 -154.81 -1.15 5.09 16
20 C -0.21 -2.34 9.94 -39.22 -0.39 -2.73 16
21 C -0.04 -0.33 10.16 -39.33 -0.40 -0.73 16
22 C -0.20 -2.28 9.87 -39.37 -0.39 -2.67 16
23 C 0.21 3.41 7.27 -17.46 -0.13 3.28 16
24 Cl -0.03 -0.42 29.10 -51.86 -1.51 -1.93 16
25 N -0.47 -8.88 7.90 -9.50 -0.08 -8.95 16
26 H 0.08 1.37 6.04 -51.93 -0.31 1.06 16
27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
28 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16
29 H 0.09 1.61 7.73 -51.93 -0.40 1.21 16
30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.07 1.14 6.43 -51.93 -0.33 0.80 16
33 H 0.03 0.81 7.80 -51.93 -0.41 0.41 16
34 H 0.07 2.06 5.44 -51.93 -0.28 1.77 16
35 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16
36 H 0.42 5.48 8.18 -40.82 -0.33 5.15 16
37 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16
38 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16
39 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16
LS Contribution 346.22 15.07 5.22 5.22
Total: -1.00 -33.25 346.22 -8.15 -41.40
By element:
Atomic # 1 Polarization: 6.96 SS G_CDS: -4.57 Total: 2.38 kcal
Atomic # 6 Polarization: 15.50 SS G_CDS: -2.58 Total: 12.92 kcal
Atomic # 7 Polarization: -57.43 SS G_CDS: 0.19 Total: -57.24 kcal
Atomic # 8 Polarization: -20.20 SS G_CDS: 0.13 Total: -20.07 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal
Atomic # 17 Polarization: -0.42 SS G_CDS: -1.51 Total: -1.93 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -33.25 -8.15 -41.40 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000793041856.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.831 kcal
(2) G-P(sol) polarization free energy of solvation -33.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.564 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds