Wall clock time and date at job start Tue Mar 31 2020 13:45:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.46868 * 2 1
4 4 N 1.46499 * 109.47306 * 119.99893 * 2 1 3
5 5 C 1.46503 * 119.99876 * 123.37113 * 4 2 1
6 6 C 1.50696 * 109.47506 * 262.77613 * 5 4 2
7 7 H 1.08003 * 119.99686 * 359.97438 * 6 5 4
8 8 C 1.37876 * 120.00338 * 180.02562 * 6 5 4
9 9 N 1.31522 * 119.99583 * 359.97438 * 8 6 5
10 10 Si 1.86796 * 120.00214 * 180.02562 * 8 6 5
11 11 H 1.48493 * 109.47396 * 89.99570 * 10 8 6
12 12 H 1.48501 * 109.47010 * 209.99743 * 10 8 6
13 13 H 1.48494 * 109.47023 * 329.99446 * 10 8 6
14 14 C 1.34769 * 119.99988 * 303.37919 * 4 2 1
15 15 O 1.21361 * 120.00421 * 3.59155 * 14 4 2
16 16 C 1.49370 * 120.00163 * 183.59826 * 14 4 2
17 17 O 1.21362 * 119.99612 * 354.61395 * 16 14 4
18 18 N 1.34776 * 120.00022 * 174.89367 * 16 14 4
19 19 C 1.39253 * 119.99788 * 184.84360 * 18 16 14
20 20 C 1.39045 * 119.68896 * 185.36537 * 19 18 16
21 21 C 1.38397 * 119.12451 * 179.79405 * 20 19 18
22 22 C 1.38769 * 118.51401 * 0.46249 * 21 20 19
23 23 C 1.38275 * 119.30589 * 359.75759 * 22 21 20
24 24 Cl 1.73601 * 119.59235 * 179.97438 * 23 22 21
25 25 N 1.32009 * 120.81703 * 0.02562 * 23 22 21
26 26 H 1.08995 * 109.47373 * 305.69849 * 1 2 3
27 27 H 1.09000 * 109.47487 * 65.70471 * 1 2 3
28 28 H 1.09008 * 109.47225 * 185.70111 * 1 2 3
29 29 H 1.08996 * 109.47001 * 239.99932 * 2 1 3
30 30 H 1.08997 * 109.46852 * 184.90237 * 3 2 1
31 31 H 1.08997 * 109.46887 * 304.89622 * 3 2 1
32 32 H 1.08997 * 109.46708 * 64.89867 * 3 2 1
33 33 H 1.09001 * 109.46775 * 22.77763 * 5 4 2
34 34 H 1.08998 * 109.46893 * 142.77387 * 5 4 2
35 35 H 0.97004 * 119.99308 * 180.02562 * 9 8 6
36 36 H 0.96991 * 120.00298 * 4.84092 * 18 16 14
37 37 H 1.08001 * 120.43787 * 0.02562 * 20 19 18
38 38 H 1.08005 * 120.74273 * 180.22286 * 21 20 19
39 39 H 1.08000 * 120.35086 * 179.77221 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0184 -0.6906 1.1962
5 6 2.9205 -1.8372 1.0630
6 6 2.1254 -3.1145 1.1473
7 1 1.0551 -3.0761 1.2866
8 6 2.7644 -4.3322 1.0477
9 7 4.0679 -4.3789 0.8785
10 14 1.7787 -5.9155 1.1515
11 1 1.3390 -6.3151 -0.2094
12 1 2.6250 -6.9882 1.7331
13 1 0.5885 -5.7020 2.0134
14 6 1.6376 -0.2712 2.4190
15 8 0.8395 0.6365 2.5280
16 6 2.1981 -0.9234 3.6403
17 8 2.9197 -1.8933 3.5333
18 7 1.8978 -0.4383 4.8614
19 6 2.4990 -0.9820 5.9937
20 6 2.1030 -0.5545 7.2562
21 6 2.7052 -1.1058 8.3736
22 6 3.6936 -2.0623 8.1895
23 6 4.0416 -2.4374 6.9049
24 17 5.2776 -3.6328 6.6659
25 7 3.4462 -1.8970 5.8579
26 1 -0.3634 0.5996 0.8345
27 1 -0.3634 0.4228 -0.9366
28 1 -0.3634 -1.0226 0.1021
29 1 1.8933 -0.5138 -0.8899
30 1 3.1264 1.4438 -0.0878
31 1 1.6067 1.9810 -0.8429
32 1 1.7500 1.9303 0.9306
33 1 3.4296 -1.7889 0.1004
34 1 3.6578 -1.8145 1.8655
35 1 4.5173 -5.2356 0.8080
36 1 1.2631 0.2895 4.9515
37 1 1.3328 0.1950 7.3634
38 1 2.4152 -0.7957 9.3667
39 1 4.1858 -2.5092 9.0406
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000793041856.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:45:38
Heat of formation + Delta-G solvation = -27.457094 kcal
Electronic energy + Delta-G solvation = -25832.841410 eV
Core-core repulsion = 21995.154684 eV
Total energy + Delta-G solvation = -3837.686725 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-42.20252 -41.13511 -39.47322 -37.69335 -37.40398 -35.81756 -34.94837 -33.52111
-33.06401 -31.09246 -29.00432 -28.03645 -26.66139 -24.94939 -24.70554 -23.95989
-22.39495 -20.60530 -19.17144 -18.74486 -18.44805 -17.55347 -17.12872 -16.98595
-16.83250 -16.52140 -16.10875 -15.95860 -15.76970 -15.32112 -14.85775 -14.60870
-14.35003 -14.16505 -13.99834 -13.65574 -13.30114 -13.12245 -13.03984 -12.82276
-12.78257 -12.72286 -12.53981 -12.26618 -12.21480 -12.16087 -11.70698 -11.62665
-11.39433 -10.82690 -10.77196 -10.53876 -9.87385 -9.56710 -9.32869 -8.15537
-6.24151 -0.18260 0.20273 0.71231 0.83728 1.32020 1.34293 1.35973
1.44128 2.23400 2.37538 2.53023 2.76114 3.18207 3.26721 3.66911
3.86507 4.02148 4.06407 4.19117 4.22551 4.34276 4.37542 4.65073
4.80232 4.84733 4.91990 4.99625 5.04781 5.08589 5.10964 5.23051
5.34635 5.42426 5.59450 5.71587 5.78308 5.91238 6.10602 6.33045
6.65674 6.81861 7.00788 7.18740 7.42012 8.92471
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.009987 B = 0.005469 C = 0.003938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2803.096510 B = 5118.714916 C = 7108.010469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.130 3.870
3 C -0.153 4.153
4 N -0.560 5.560
5 C 0.242 3.758
6 C -0.518 4.518
7 H 0.043 0.957
8 C 0.022 3.978
9 N -0.918 5.918
10 Si 0.949 3.051
11 H -0.265 1.265
12 H -0.285 1.285
13 H -0.278 1.278
14 C 0.510 3.490
15 O -0.546 6.546
16 C 0.472 3.528
17 O -0.431 6.431
18 N -0.634 5.634
19 C 0.354 3.646
20 C -0.185 4.185
21 C -0.021 4.021
22 C -0.177 4.177
23 C 0.177 3.823
24 Cl -0.051 7.051
25 N -0.528 5.528
26 H 0.071 0.929
27 H 0.089 0.911
28 H 0.035 0.965
29 H 0.087 0.913
30 H 0.050 0.950
31 H 0.093 0.907
32 H 0.059 0.941
33 H 0.017 0.983
34 H 0.048 0.952
35 H 0.262 0.738
36 H 0.438 0.562
37 H 0.185 0.815
38 H 0.203 0.797
39 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.470 11.167 14.058 18.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.028 3.972
3 C -0.211 4.211
4 N -0.291 5.291
5 C 0.121 3.879
6 C -0.557 4.557
7 H 0.061 0.939
8 C -0.178 4.178
9 N -0.558 5.558
10 Si 0.775 3.225
11 H -0.190 1.190
12 H -0.211 1.211
13 H -0.204 1.204
14 C 0.292 3.708
15 O -0.428 6.428
16 C 0.252 3.748
17 O -0.296 6.296
18 N -0.286 5.286
19 C 0.123 3.877
20 C -0.208 4.208
21 C -0.046 4.046
22 C -0.199 4.199
23 C 0.013 3.987
24 Cl -0.023 7.023
25 N -0.246 5.246
26 H 0.090 0.910
27 H 0.107 0.893
28 H 0.054 0.946
29 H 0.105 0.895
30 H 0.069 0.931
31 H 0.112 0.888
32 H 0.078 0.922
33 H 0.035 0.965
34 H 0.066 0.934
35 H 0.071 0.929
36 H 0.280 0.720
37 H 0.203 0.797
38 H 0.220 0.780
39 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges -3.840 10.437 12.958 17.076
hybrid contribution -0.326 -1.045 0.264 1.126
sum -4.165 9.392 13.222 16.745
Atomic orbital electron populations
1.22115 0.93891 1.01529 1.03823 1.21391 0.95678 0.93772 0.86392
1.22079 1.00810 0.94541 1.03659 1.48340 1.45286 1.30582 1.04859
1.19578 0.89171 0.81777 0.97349 1.21340 0.93157 0.91557 1.49648
0.93903 1.25532 0.95636 1.01759 0.94863 1.70027 1.09073 1.26199
1.50486 0.85707 0.78470 0.79827 0.78532 1.19008 1.21100 1.20366
1.19744 0.82729 0.83598 0.84714 1.90571 1.34579 1.30816 1.86793
1.20821 0.83236 0.85310 0.85440 1.91044 1.31227 1.22415 1.84914
1.43224 1.44539 1.37830 1.03013 1.18623 0.90469 0.91222 0.87352
1.22031 1.04693 1.04987 0.89119 1.21953 0.90828 0.91053 1.00784
1.22140 1.01368 1.01225 0.95184 1.21753 0.93109 0.93673 0.90209
1.98401 1.51467 1.54569 1.97855 1.66526 1.10406 1.11734 1.35938
0.91030 0.89275 0.94572 0.89452 0.93118 0.88799 0.92179 0.96532
0.93445 0.92919 0.72014 0.79747 0.78042 0.80834
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.02 8.94 71.98 0.64 -4.38 16
2 C 0.13 4.61 3.27 44.99 0.15 4.76 16
3 C -0.15 -4.46 9.23 71.98 0.66 -3.80 16
4 N -0.56 -24.51 2.43 -803.81 -1.95 -26.46 16
5 C 0.24 12.85 4.76 85.63 0.41 13.26 16
6 C -0.52 -29.88 8.28 25.60 0.21 -29.67 16
7 H 0.04 2.50 7.81 -2.91 -0.02 2.48 16
8 C 0.02 1.28 5.46 84.65 0.46 1.74 16
9 N -0.92 -56.61 13.29 21.45 0.28 -56.33 16
10 Si 0.95 46.91 29.54 68.60 2.03 48.93 16
11 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16
12 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16
13 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16
14 C 0.51 21.30 7.05 87.25 0.62 21.91 16
15 O -0.55 -20.89 12.79 -3.28 -0.04 -20.93 16
16 C 0.47 20.25 7.71 87.24 0.67 20.92 16
17 O -0.43 -22.69 10.65 -3.28 -0.03 -22.72 16
18 N -0.63 -20.51 5.38 -309.79 -1.67 -22.18 16
19 C 0.35 10.95 7.40 132.96 0.98 11.94 16
20 C -0.19 -3.37 9.94 22.50 0.22 -3.15 16
21 C -0.02 -0.29 10.16 22.43 0.23 -0.06 16
22 C -0.18 -3.54 9.87 22.41 0.22 -3.31 16
23 C 0.18 5.64 7.27 84.67 0.62 6.25 16
24 Cl -0.05 -1.71 29.10 -2.72 -0.08 -1.79 16
25 N -0.53 -20.46 7.90 -183.97 -1.45 -21.91 16
26 H 0.07 2.40 6.04 -2.39 -0.01 2.38 16
27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
28 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16
29 H 0.09 3.12 7.73 -2.39 -0.02 3.11 16
30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
31 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16
32 H 0.06 1.87 6.43 -2.39 -0.02 1.86 16
33 H 0.02 0.92 7.80 -2.39 -0.02 0.90 16
34 H 0.05 2.84 5.44 -2.39 -0.01 2.82 16
35 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
36 H 0.44 10.76 8.18 -92.71 -0.76 10.01 16
37 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16
38 H 0.20 0.66 8.06 -2.91 -0.02 0.63 16
39 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16
Total: -1.00 -78.52 346.22 3.52 -74.99
By element:
Atomic # 1 Polarization: 11.64 SS G_CDS: 0.34 Total: 11.98 kcal
Atomic # 6 Polarization: 30.31 SS G_CDS: 6.10 Total: 36.41 kcal
Atomic # 7 Polarization: -122.10 SS G_CDS: -4.79 Total: -126.88 kcal
Atomic # 8 Polarization: -43.57 SS G_CDS: -0.08 Total: -43.65 kcal
Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal
Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal
Total: -78.52 3.52 -74.99 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000793041856.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.538 kcal
(2) G-P(sol) polarization free energy of solvation -78.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.980 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.457 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds