Wall clock time and date at job start Tue Mar 31 2020 14:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39016 * 119.99999 * 2 1 4 4 C 1.39091 * 119.63621 * 0.02562 * 3 2 1 5 5 C 1.39533 * 118.95971 * 180.02562 * 4 3 2 6 6 C 1.48168 * 120.86881 * 180.02562 * 5 4 3 7 7 O 1.21514 * 120.00254 * 6.94058 * 6 5 4 8 8 N 1.34779 * 119.99851 * 186.93886 * 6 5 4 9 9 C 1.47426 * 125.64786 * 174.49100 * 8 6 5 10 10 C 1.54911 * 104.92718 * 155.84034 * 9 8 6 11 11 C 1.55446 * 101.45144 * 37.00207 * 10 9 8 12 12 O 1.42906 * 110.70528 * 82.89069 * 11 10 9 13 13 C 1.50699 * 110.85889 * 206.07184 * 11 10 9 14 14 H 1.08003 * 119.99644 * 119.18724 * 13 11 10 15 15 C 1.37878 * 120.00050 * 299.19174 * 13 11 10 16 16 N 1.31518 * 119.99873 * 175.43295 * 15 13 11 17 17 Si 1.86800 * 119.99933 * 355.42783 * 15 13 11 18 18 H 1.48501 * 109.47028 * 94.78826 * 17 15 13 19 19 H 1.48504 * 109.46885 * 214.78653 * 17 15 13 20 20 H 1.48495 * 109.47109 * 334.78706 * 17 15 13 21 21 C 1.47016 * 125.64694 * 354.51787 * 8 6 5 22 22 C 1.39951 * 118.25453 * 0.27317 * 5 4 3 23 23 C 1.38131 * 119.16227 * 359.47781 * 22 5 4 24 24 Cl 1.73605 * 119.52082 * 180.25157 * 23 22 5 25 25 N 1.32010 * 120.96848 * 0.53737 * 23 22 5 26 26 H 1.08995 * 109.47228 * 299.99600 * 1 2 3 27 27 H 1.08993 * 109.47099 * 60.00090 * 1 2 3 28 28 H 1.09003 * 109.47107 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00222 * 180.02562 * 2 1 3 30 30 H 1.07994 * 120.51650 * 0.02562 * 4 3 2 31 31 H 1.09003 * 110.36322 * 274.73471 * 9 8 6 32 32 H 1.08994 * 110.36767 * 36.94047 * 9 8 6 33 33 H 1.09006 * 111.00087 * 155.13870 * 10 9 8 34 34 H 1.09000 * 110.99871 * 278.98846 * 10 9 8 35 35 H 0.96700 * 113.99385 * 184.99638 * 12 11 10 36 36 H 0.96993 * 119.99949 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.88267 * 300.45194 * 21 8 6 38 38 H 1.09005 * 109.88334 * 61.46498 * 21 8 6 39 39 H 1.07996 * 120.41891 * 179.73165 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1601 1.2039 0.0000 4 6 1.4570 2.4040 0.0005 5 6 2.1689 3.6041 0.0000 6 6 1.4629 4.9068 0.0011 7 8 0.2551 4.9433 0.1297 8 7 2.1604 6.0514 -0.1405 9 6 1.5804 7.4004 -0.2715 10 6 2.6940 8.3623 0.2124 11 6 3.9681 7.6591 -0.3340 12 8 4.1842 7.9991 -1.7050 13 6 5.1743 8.0125 0.4975 14 1 5.7214 7.2365 1.0122 15 6 5.5794 9.3263 0.6010 16 7 6.5761 9.6463 1.3972 17 14 4.7125 10.6518 -0.3895 18 1 3.6539 11.2785 0.4422 19 1 5.6962 11.6856 -0.8003 20 1 4.0985 10.0449 -1.5977 21 6 3.6256 6.1612 -0.1903 22 6 3.5671 3.5450 -0.0070 23 6 4.1887 2.3114 -0.0020 24 17 5.9227 2.2272 -0.0039 25 7 3.4835 1.1954 -0.0015 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9501 -0.8401 -0.0004 30 1 0.3771 2.4069 0.0014 31 1 1.3278 7.6052 -1.3119 32 1 0.6962 7.4960 0.3586 33 1 2.5729 9.3526 -0.2268 34 1 2.7152 8.4192 1.3007 35 1 4.9220 7.5276 -2.1155 36 1 6.8608 10.5706 1.4703 37 1 4.0583 5.7687 0.7299 38 1 4.0100 5.6069 -1.0466 39 1 4.1528 4.4523 -0.0120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:32 Heat of formation + Delta-G solvation = -31.153898 kcal Electronic energy + Delta-G solvation = -25605.732370 eV Core-core repulsion = 21767.885339 eV Total energy + Delta-G solvation = -3837.847031 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.05842 -40.75199 -39.17744 -37.91868 -36.70366 -36.15821 -34.46179 -34.09983 -31.95798 -31.14641 -30.00742 -27.55105 -27.20044 -25.95011 -23.78785 -23.43839 -21.75000 -21.26931 -19.57079 -18.79294 -18.73877 -17.76630 -17.03293 -16.84977 -16.71527 -16.52065 -16.00867 -15.91002 -15.80737 -15.55932 -15.04468 -14.88043 -14.73118 -14.54425 -14.14365 -13.91381 -13.41099 -13.22842 -13.09522 -12.91143 -12.87428 -12.81643 -12.37722 -12.24090 -12.16571 -11.74002 -11.49992 -11.43045 -10.88123 -10.78395 -10.73754 -10.73277 -10.16144 -9.76577 -8.88079 -8.31270 -6.45700 -0.51419 -0.04696 0.63141 1.41327 1.51397 1.64648 1.72985 1.77252 2.14826 2.44567 2.60150 3.04897 3.08944 3.55402 3.64626 3.72517 3.81179 3.96536 3.99054 4.12146 4.22759 4.31551 4.39702 4.44363 4.58939 4.63603 4.69453 4.85424 4.88027 4.94770 5.02849 5.04887 5.14250 5.40164 5.55049 5.77167 6.11730 6.30564 6.34376 6.66179 6.83993 6.85142 7.20359 7.36596 8.81930 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.004052 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.687868 B = 6909.010347 C = 8256.430232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.715 5.715 3 C 0.413 3.587 4 C -0.176 4.176 5 C -0.038 4.038 6 C 0.572 3.428 7 O -0.563 6.563 8 N -0.598 5.598 9 C 0.114 3.886 10 C -0.127 4.127 11 C 0.216 3.784 12 O -0.571 6.571 13 C -0.545 4.545 14 H 0.050 0.950 15 C 0.040 3.960 16 N -0.934 5.934 17 Si 0.919 3.081 18 H -0.284 1.284 19 H -0.311 1.311 20 H -0.193 1.193 21 C 0.082 3.918 22 C -0.222 4.222 23 C 0.216 3.784 24 Cl -0.019 7.019 25 N -0.541 5.541 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.416 0.584 30 H 0.160 0.840 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.379 0.621 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.501 -17.126 -5.152 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.348 5.348 3 C 0.175 3.825 4 C -0.202 4.202 5 C -0.049 4.049 6 C 0.361 3.639 7 O -0.444 6.444 8 N -0.330 5.330 9 C -0.008 4.008 10 C -0.165 4.165 11 C 0.176 3.824 12 O -0.379 6.379 13 C -0.583 4.583 14 H 0.068 0.932 15 C -0.160 4.160 16 N -0.573 5.573 17 Si 0.745 3.255 18 H -0.210 1.210 19 H -0.239 1.239 20 H -0.115 1.115 21 C -0.040 4.040 22 C -0.245 4.245 23 C 0.052 3.948 24 Cl 0.009 6.991 25 N -0.262 5.262 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.252 0.748 30 H 0.178 0.822 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.228 0.772 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.248 -17.455 -4.917 21.340 hybrid contribution 0.812 1.002 0.058 1.291 sum -10.436 -16.453 -4.859 20.081 Atomic orbital electron populations 1.21933 0.76484 1.05288 1.02022 1.44418 1.07071 1.03968 1.79319 1.18094 0.86203 0.87710 0.90499 1.21629 1.02317 0.89706 1.06550 1.19867 0.93033 0.93303 0.98703 1.17919 0.86042 0.83038 0.76865 1.90719 1.14375 1.87247 1.52018 1.48417 1.08340 1.06632 1.69564 1.22310 0.96666 0.79896 1.01921 1.23067 0.93815 0.98423 1.01172 1.19920 0.92541 0.89047 0.80930 1.86547 1.56252 1.69392 1.25745 1.21408 1.12460 0.93772 1.30627 0.93162 1.25660 0.94711 1.01118 0.94556 1.70055 1.29365 1.19492 1.38346 0.86428 0.78232 0.77840 0.83003 1.21018 1.23923 1.11488 1.23285 0.78992 0.99485 1.02259 1.23102 0.94709 0.99994 1.06716 1.21159 0.87570 0.88818 0.97224 1.98424 1.05797 1.98587 1.96268 1.66216 1.07173 1.31548 1.21313 0.92196 0.92049 0.86889 0.74757 0.82229 0.90097 0.89933 0.90385 0.90242 0.77192 0.92520 0.89982 0.88849 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 9.92 127.77 1.27 2.09 16 2 N -0.72 -11.14 5.89 -366.62 -2.16 -13.30 16 3 C 0.41 9.67 7.65 133.06 1.02 10.69 16 4 C -0.18 -4.45 8.89 22.79 0.20 -4.25 16 5 C -0.04 -1.12 5.90 -19.91 -0.12 -1.24 16 6 C 0.57 19.14 7.83 86.88 0.68 19.82 16 7 O -0.56 -20.89 16.69 -3.76 -0.06 -20.95 16 8 N -0.60 -20.01 3.33 -816.15 -2.71 -22.72 16 9 C 0.11 3.73 6.92 86.86 0.60 4.33 16 10 C -0.13 -4.75 5.05 32.09 0.16 -4.59 16 11 C 0.22 8.51 0.67 -10.25 -0.01 8.50 16 12 O -0.57 -21.13 9.94 -148.98 -1.48 -22.61 16 13 C -0.54 -27.01 8.81 25.60 0.23 -26.79 16 14 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 15 C 0.04 2.14 5.44 84.65 0.46 2.60 16 16 N -0.93 -54.50 13.96 21.45 0.30 -54.20 16 17 Si 0.92 41.21 24.26 68.60 1.66 42.88 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 20 H -0.19 -7.98 5.13 99.48 0.51 -7.47 16 21 C 0.08 2.76 4.22 86.73 0.37 3.13 16 22 C -0.22 -6.38 8.44 22.66 0.19 -6.19 16 23 C 0.22 6.06 7.26 84.64 0.61 6.67 16 24 Cl -0.02 -0.51 29.10 -2.72 -0.08 -0.59 16 25 N -0.54 -14.47 10.34 -184.26 -1.91 -16.38 16 26 H 0.06 0.61 7.92 -2.39 -0.02 0.60 16 27 H 0.06 0.60 7.93 -2.39 -0.02 0.58 16 28 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.42 5.32 8.95 -92.70 -0.83 4.49 16 30 H 0.16 3.64 6.40 -2.91 -0.02 3.62 16 31 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.08 2.58 7.98 -2.39 -0.02 2.56 16 33 H 0.08 2.91 5.35 -2.38 -0.01 2.90 16 34 H 0.08 3.11 8.05 -2.39 -0.02 3.09 16 35 H 0.38 11.71 9.08 -74.06 -0.67 11.04 16 36 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.08 2.89 6.29 -2.39 -0.02 2.88 16 38 H 0.09 2.78 6.66 -2.38 -0.02 2.76 16 39 H 0.18 5.19 2.92 -3.43 -0.01 5.18 16 Total: -1.00 -65.57 329.80 -1.33 -66.90 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -0.56 Total: 26.19 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 5.66 Total: 14.77 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -6.48 Total: -106.60 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.54 Total: -43.55 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.66 Total: 42.88 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -65.57 -1.33 -66.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.748 kcal (2) G-P(sol) polarization free energy of solvation -65.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds