Wall clock time and date at job start Tue Mar 31 2020 14:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47243 * 2 1 4 4 C 1.46500 * 120.00260 * 274.15389 * 3 2 1 5 5 C 1.53001 * 109.47158 * 270.00070 * 4 3 2 6 6 S 1.81401 * 109.47063 * 179.97438 * 5 4 3 7 7 C 1.81397 * 102.99695 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99759 * 94.14841 * 3 2 1 9 9 O 1.21604 * 119.99686 * 175.22880 * 8 3 2 10 10 C 1.47426 * 119.99899 * 355.23388 * 8 3 2 11 11 C 1.39678 * 120.21402 * 60.44963 * 10 8 3 12 12 C 1.37806 * 119.93598 * 179.97438 * 11 10 8 13 13 C 1.38659 * 120.38262 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43866 * 0.02562 * 13 12 11 15 15 C 1.39113 * 120.04841 * 359.97438 * 14 13 12 16 16 S 1.76198 * 120.18642 * 180.02562 * 15 14 13 17 17 C 1.76197 * 100.00111 * 351.92399 * 16 15 14 18 18 H 1.07994 * 120.00502 * 4.85847 * 17 16 15 19 19 C 1.38807 * 119.99923 * 184.86347 * 17 16 15 20 20 N 1.31552 * 119.99953 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99900 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47029 * 90.00261 * 21 19 17 23 23 H 1.48502 * 109.46787 * 210.00058 * 21 19 17 24 24 H 1.48493 * 109.47125 * 329.99881 * 21 19 17 25 25 H 1.08997 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46671 * 300.00010 * 1 2 3 27 27 H 1.08998 * 109.47045 * 59.99614 * 1 2 3 28 28 H 1.09001 * 109.46641 * 240.00498 * 2 1 3 29 29 H 1.08998 * 109.47045 * 120.00386 * 2 1 3 30 30 H 1.09008 * 109.47208 * 29.99731 * 4 3 2 31 31 H 1.08995 * 109.47367 * 149.99761 * 4 3 2 32 32 H 1.08995 * 109.46557 * 300.00050 * 5 4 3 33 33 H 1.09003 * 109.47142 * 59.99920 * 5 4 3 34 34 H 1.09003 * 109.47067 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47077 * 300.00130 * 7 6 5 36 36 H 1.09001 * 109.47504 * 60.00217 * 7 6 5 37 37 H 1.07997 * 120.03549 * 0.27733 * 11 10 8 38 38 H 1.08005 * 119.80935 * 179.97438 * 12 11 10 39 39 H 1.08006 * 119.78091 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.97322 * 180.02562 * 14 13 12 41 41 H 0.97008 * 119.99548 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1760 2.1025 -1.2654 5 6 3.5873 1.8740 -1.8104 6 16 3.7821 2.7665 -3.3776 7 6 5.4882 2.3804 -3.8576 8 6 2.3227 1.9884 1.1642 9 8 2.8095 3.1027 1.1597 10 6 2.0654 1.3015 2.4430 11 6 2.6893 0.0840 2.7249 12 6 2.4450 -0.5529 3.9223 13 6 1.5817 0.0075 4.8514 14 6 0.9565 1.2084 4.5888 15 6 1.1900 1.8668 3.3858 16 16 0.3936 3.4016 3.0468 17 6 -0.7166 3.4786 4.4128 18 1 -0.6778 2.7231 5.1835 19 6 -1.6413 4.5103 4.4983 20 7 -2.4699 4.5680 5.5185 21 14 -1.7081 5.8175 3.1656 22 1 -2.6528 5.3920 2.1018 23 1 -2.1699 7.1006 3.7535 24 1 -0.3547 5.9991 2.5821 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.4446 1.7363 -1.9859 31 1 2.0192 3.1681 -1.0982 32 1 4.3186 2.2402 -1.0899 33 1 3.7440 0.8083 -1.9776 34 1 5.7203 2.8729 -4.8019 35 1 6.1718 2.7346 -3.0859 36 1 5.5981 1.3021 -3.9731 37 1 3.3662 -0.3554 2.0073 38 1 2.9283 -1.4944 4.1380 39 1 1.3976 -0.4998 5.7870 40 1 0.2858 1.6383 5.3180 41 1 -3.1163 5.2889 5.5780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844123596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:22 Heat of formation + Delta-G solvation = -7.132777 kcal Electronic energy + Delta-G solvation = -23048.540509 eV Core-core repulsion = 19760.072033 eV Total energy + Delta-G solvation = -3288.468476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.07279 -37.81743 -35.99675 -32.80469 -32.48781 -30.65799 -30.53624 -29.46359 -29.00502 -26.00940 -24.41236 -23.64600 -22.17069 -22.05129 -19.44431 -17.97137 -17.05332 -16.76207 -16.30031 -16.07041 -15.36835 -15.09945 -14.85076 -14.47877 -14.16346 -13.91117 -13.77353 -13.62414 -13.51875 -13.40941 -12.87620 -12.77583 -12.55318 -12.27945 -12.15096 -12.00404 -11.77793 -11.36417 -11.26722 -11.24670 -11.09420 -10.96305 -10.59041 -10.25351 -9.76645 -9.61132 -9.52972 -8.92392 -8.78127 -8.67206 -8.38386 -7.88232 -6.90508 -6.53574 -4.28254 1.35379 1.56407 1.82570 2.35759 2.77062 2.95097 3.14947 3.26059 3.30605 3.38998 4.08636 4.17517 4.50241 4.63647 4.75907 4.85560 4.88439 4.88940 4.92738 4.98330 5.22957 5.26112 5.31245 5.41814 5.45266 5.47280 5.59256 5.74331 5.79043 5.88602 5.93262 6.01904 6.17654 6.35361 6.41997 6.60535 6.71017 6.88049 6.99038 7.36865 7.50348 7.69869 8.27637 8.42925 8.89076 10.53526 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.004293 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.615654 B = 6520.742554 C = 8004.575209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.609 5.609 4 C 0.135 3.865 5 C -0.099 4.099 6 S -0.257 6.257 7 C -0.119 4.119 8 C 0.573 3.427 9 O -0.516 6.516 10 C -0.150 4.150 11 C -0.077 4.077 12 C -0.165 4.165 13 C -0.083 4.083 14 C -0.138 4.138 15 C -0.024 4.024 16 S -0.001 6.001 17 C -0.550 4.550 18 H 0.110 0.890 19 C 0.103 3.897 20 N -0.862 5.862 21 Si 0.849 3.151 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.236 1.236 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.147 0.853 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.621 -11.421 -13.677 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 N -0.343 5.343 4 C 0.011 3.989 5 C -0.249 4.249 6 S -0.032 6.032 7 C -0.288 4.288 8 C 0.361 3.639 9 O -0.391 6.391 10 C -0.163 4.163 11 C -0.097 4.097 12 C -0.189 4.189 13 C -0.104 4.104 14 C -0.163 4.163 15 C -0.142 4.142 16 S 0.256 5.744 17 C -0.696 4.696 18 H 0.128 0.872 19 C -0.108 4.108 20 N -0.495 5.495 21 Si 0.673 3.327 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.160 1.160 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.164 0.836 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.966 -9.000 -15.026 20.152 hybrid contribution 0.504 -1.127 1.262 1.765 sum 10.470 -10.127 -13.764 20.040 Atomic orbital electron populations 1.22175 0.95507 1.02125 1.03188 1.21802 0.95183 0.82145 1.03355 1.47925 1.66401 1.14698 1.05290 1.21010 0.93358 0.99478 0.85073 1.23846 1.02895 1.01926 0.96231 1.86845 1.18186 1.69712 1.28496 1.23360 0.95566 1.04756 1.05154 1.18369 0.76823 0.85185 0.83513 1.90797 1.42180 1.19038 1.87107 1.19163 1.04853 0.97413 0.94867 1.20792 0.98583 0.93138 0.97170 1.20745 1.02272 1.00926 0.94922 1.21124 0.95594 0.95171 0.98530 1.21558 1.01739 0.95838 0.97119 1.22238 0.97619 0.99075 0.95233 1.83448 1.40332 1.15920 1.34697 1.22901 1.20072 1.17088 1.09574 0.87240 1.24767 0.93522 0.96888 0.95602 1.69882 1.18599 1.32296 1.28751 0.86879 0.81614 0.81828 0.82362 1.18718 1.19206 1.16043 0.91723 0.91343 0.92578 0.90992 0.88897 0.89693 0.88816 0.89450 0.90129 0.88074 0.90436 0.90607 0.86558 0.86609 0.86495 0.83595 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.10 1.10 5.95 -4.04 -0.02 1.07 16 3 N -0.61 -8.69 2.47 -174.95 -0.43 -9.12 16 4 C 0.13 1.74 5.40 -4.04 -0.02 1.72 16 5 C -0.10 -1.11 6.26 37.16 0.23 -0.88 16 6 S -0.26 -2.82 22.38 -107.50 -2.41 -5.23 16 7 C -0.12 -0.92 10.76 101.05 1.09 0.17 16 8 C 0.57 10.54 6.33 -12.52 -0.08 10.46 16 9 O -0.52 -11.31 16.06 5.27 0.08 -11.23 16 10 C -0.15 -2.78 4.97 -104.75 -0.52 -3.30 16 11 C -0.08 -1.14 7.59 -39.20 -0.30 -1.44 16 12 C -0.17 -2.34 10.02 -39.58 -0.40 -2.74 16 13 C -0.08 -1.34 10.03 -39.55 -0.40 -1.74 16 14 C -0.14 -2.77 9.25 -39.38 -0.36 -3.14 16 15 C -0.02 -0.53 6.14 -38.39 -0.24 -0.76 16 16 S 0.00 -0.02 18.15 -107.50 -1.95 -1.97 16 17 C -0.55 -15.10 9.62 30.94 0.30 -14.81 16 18 H 0.11 3.09 5.09 -52.49 -0.27 2.82 16 19 C 0.10 2.87 5.50 -17.46 -0.10 2.78 16 20 N -0.86 -24.69 13.96 55.49 0.77 -23.92 16 21 Si 0.85 20.64 27.74 -169.99 -4.71 15.93 16 22 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.09 1.04 4.31 -51.93 -0.22 0.82 16 30 H 0.08 0.94 8.07 -51.92 -0.42 0.52 16 31 H 0.09 1.45 7.49 -51.93 -0.39 1.07 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.12 1.39 7.36 -52.49 -0.39 1.00 16 38 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 39 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.15 3.21 4.98 -52.49 -0.26 2.95 16 41 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -31.22 364.73 -9.33 -40.55 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.75 Total: 3.74 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.43 Total: -14.25 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.34 Total: -33.04 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.71 Total: 15.93 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -4.36 Total: -7.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.22 -9.33 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844123596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.422 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds