Wall clock time and date at job start Tue Mar 31 2020 14:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47243 * 2 1 4 4 C 1.46500 * 120.00260 * 274.15389 * 3 2 1 5 5 C 1.53001 * 109.47158 * 270.00070 * 4 3 2 6 6 S 1.81401 * 109.47063 * 179.97438 * 5 4 3 7 7 C 1.81397 * 102.99695 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99759 * 94.14841 * 3 2 1 9 9 O 1.21604 * 119.99686 * 175.22880 * 8 3 2 10 10 C 1.47426 * 119.99899 * 355.23388 * 8 3 2 11 11 C 1.39678 * 120.21402 * 60.44963 * 10 8 3 12 12 C 1.37806 * 119.93598 * 179.97438 * 11 10 8 13 13 C 1.38659 * 120.38262 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43866 * 0.02562 * 13 12 11 15 15 C 1.39113 * 120.04841 * 359.97438 * 14 13 12 16 16 S 1.76198 * 120.18642 * 180.02562 * 15 14 13 17 17 C 1.76197 * 100.00111 * 351.92399 * 16 15 14 18 18 H 1.07994 * 120.00502 * 4.85847 * 17 16 15 19 19 C 1.38807 * 119.99923 * 184.86347 * 17 16 15 20 20 N 1.31552 * 119.99953 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99900 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47029 * 90.00261 * 21 19 17 23 23 H 1.48502 * 109.46787 * 210.00058 * 21 19 17 24 24 H 1.48493 * 109.47125 * 329.99881 * 21 19 17 25 25 H 1.08997 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46671 * 300.00010 * 1 2 3 27 27 H 1.08998 * 109.47045 * 59.99614 * 1 2 3 28 28 H 1.09001 * 109.46641 * 240.00498 * 2 1 3 29 29 H 1.08998 * 109.47045 * 120.00386 * 2 1 3 30 30 H 1.09008 * 109.47208 * 29.99731 * 4 3 2 31 31 H 1.08995 * 109.47367 * 149.99761 * 4 3 2 32 32 H 1.08995 * 109.46557 * 300.00050 * 5 4 3 33 33 H 1.09003 * 109.47142 * 59.99920 * 5 4 3 34 34 H 1.09003 * 109.47067 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47077 * 300.00130 * 7 6 5 36 36 H 1.09001 * 109.47504 * 60.00217 * 7 6 5 37 37 H 1.07997 * 120.03549 * 0.27733 * 11 10 8 38 38 H 1.08005 * 119.80935 * 179.97438 * 12 11 10 39 39 H 1.08006 * 119.78091 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.97322 * 180.02562 * 14 13 12 41 41 H 0.97008 * 119.99548 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1760 2.1025 -1.2654 5 6 3.5873 1.8740 -1.8104 6 16 3.7821 2.7665 -3.3776 7 6 5.4882 2.3804 -3.8576 8 6 2.3227 1.9884 1.1642 9 8 2.8095 3.1027 1.1597 10 6 2.0654 1.3015 2.4430 11 6 2.6893 0.0840 2.7249 12 6 2.4450 -0.5529 3.9223 13 6 1.5817 0.0075 4.8514 14 6 0.9565 1.2084 4.5888 15 6 1.1900 1.8668 3.3858 16 16 0.3936 3.4016 3.0468 17 6 -0.7166 3.4786 4.4128 18 1 -0.6778 2.7231 5.1835 19 6 -1.6413 4.5103 4.4983 20 7 -2.4699 4.5680 5.5185 21 14 -1.7081 5.8175 3.1656 22 1 -2.6528 5.3920 2.1018 23 1 -2.1699 7.1006 3.7535 24 1 -0.3547 5.9991 2.5821 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.4446 1.7363 -1.9859 31 1 2.0192 3.1681 -1.0982 32 1 4.3186 2.2402 -1.0899 33 1 3.7440 0.8083 -1.9776 34 1 5.7203 2.8729 -4.8019 35 1 6.1718 2.7346 -3.0859 36 1 5.5981 1.3021 -3.9731 37 1 3.3662 -0.3554 2.0073 38 1 2.9283 -1.4944 4.1380 39 1 1.3976 -0.4998 5.7870 40 1 0.2858 1.6383 5.3180 41 1 -3.1163 5.2889 5.5780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844123596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:22 Heat of formation + Delta-G solvation = -25.125096 kcal Electronic energy + Delta-G solvation = -23049.320715 eV Core-core repulsion = 19760.072033 eV Total energy + Delta-G solvation = -3289.248682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40633 -39.19723 -37.27101 -34.87907 -33.57153 -32.01118 -31.89858 -30.43793 -29.72984 -28.07385 -25.63678 -24.70424 -23.52907 -23.32064 -20.89607 -19.64935 -18.39497 -17.88853 -17.74339 -17.28468 -17.12914 -16.41981 -16.14676 -15.56877 -15.36588 -15.20250 -15.05040 -14.87221 -14.45964 -14.42656 -14.18289 -13.94229 -13.84335 -13.73701 -13.37916 -13.16518 -13.10890 -13.03337 -12.84337 -12.57345 -12.33561 -12.28614 -12.00181 -11.52618 -11.39518 -11.17626 -11.00191 -10.63409 -10.56410 -9.94874 -9.68942 -8.74856 -8.72796 -8.63952 -6.37795 0.11643 0.42575 0.59518 0.95044 1.18681 1.35060 1.52745 1.57770 1.61283 2.08794 2.11516 2.52516 2.70949 2.84233 3.49869 3.80611 3.86019 3.99077 4.09366 4.21193 4.31739 4.32319 4.35484 4.36400 4.51734 4.57248 4.58682 4.61791 4.75729 4.81359 4.86776 4.88429 4.97397 5.04016 5.36617 5.37835 5.43457 5.54248 5.59447 5.63052 6.01617 6.13529 6.27492 6.78453 7.08079 8.46997 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.004293 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.615654 B = 6520.742554 C = 8004.575209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.598 5.598 4 C 0.134 3.866 5 C -0.082 4.082 6 S -0.302 6.302 7 C -0.107 4.107 8 C 0.566 3.434 9 O -0.564 6.564 10 C -0.150 4.150 11 C -0.068 4.068 12 C -0.133 4.133 13 C -0.080 4.080 14 C -0.160 4.160 15 C -0.050 4.050 16 S -0.058 6.058 17 C -0.554 4.554 18 H 0.088 0.912 19 C 0.057 3.943 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.255 1.255 23 H -0.252 1.252 24 H -0.246 1.246 25 H 0.091 0.909 26 H 0.025 0.975 27 H 0.057 0.943 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.148 0.852 40 H 0.114 0.886 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.083 -15.279 -15.789 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 N -0.331 5.331 4 C 0.010 3.990 5 C -0.231 4.231 6 S -0.078 6.078 7 C -0.275 4.275 8 C 0.354 3.646 9 O -0.443 6.443 10 C -0.162 4.162 11 C -0.088 4.088 12 C -0.155 4.155 13 C -0.100 4.100 14 C -0.185 4.185 15 C -0.165 4.165 16 S 0.194 5.806 17 C -0.701 4.701 18 H 0.106 0.894 19 C -0.150 4.150 20 N -0.539 5.539 21 Si 0.724 3.276 22 H -0.180 1.180 23 H -0.175 1.175 24 H -0.170 1.170 25 H 0.109 0.891 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.179 0.821 38 H 0.188 0.812 39 H 0.166 0.834 40 H 0.132 0.868 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.449 -12.955 -17.153 24.840 hybrid contribution -0.067 -0.261 1.872 1.892 sum 12.383 -13.216 -15.281 23.696 Atomic orbital electron populations 1.22159 0.96201 1.03232 1.01214 1.22114 0.94543 0.80358 1.05724 1.47975 1.64758 1.15817 1.04504 1.21072 0.95505 0.97562 0.84820 1.23630 1.00673 1.03344 0.95488 1.87031 1.21715 1.70660 1.28356 1.23431 0.92350 1.06143 1.05618 1.18498 0.76693 0.84729 0.84659 1.90773 1.44732 1.20968 1.87825 1.19438 1.03814 0.98513 0.94394 1.21329 0.97787 0.91264 0.98410 1.21377 0.99367 1.01748 0.92981 1.21499 0.94793 0.93334 1.00377 1.21454 1.02746 0.97887 0.96370 1.22155 0.99415 0.97960 0.97019 1.83303 1.41880 1.20805 1.34596 1.22992 1.20674 1.16531 1.09857 0.89449 1.25498 0.93353 0.98713 0.97456 1.69951 1.19841 1.33597 1.30464 0.86080 0.81148 0.80146 0.80216 1.17960 1.17534 1.16988 0.89051 0.95556 0.92366 0.86663 0.88278 0.87405 0.92376 0.91421 0.87279 0.86738 0.90305 0.88751 0.82109 0.81186 0.83408 0.86842 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 10.24 71.98 0.74 -2.93 16 2 C 0.09 1.74 5.95 86.38 0.51 2.25 16 3 N -0.60 -16.09 2.47 -825.67 -2.04 -18.13 16 4 C 0.13 3.33 5.40 86.38 0.47 3.80 16 5 C -0.08 -1.67 6.26 71.98 0.45 -1.22 16 6 S -0.30 -6.20 22.38 -56.49 -1.26 -7.47 16 7 C -0.11 -1.35 10.76 113.37 1.22 -0.13 16 8 C 0.57 20.72 6.33 86.66 0.55 21.27 16 9 O -0.56 -25.61 16.06 -4.04 -0.06 -25.68 16 10 C -0.15 -5.40 4.97 -19.95 -0.10 -5.50 16 11 C -0.07 -1.72 7.59 22.52 0.17 -1.55 16 12 C -0.13 -3.02 10.02 22.27 0.22 -2.80 16 13 C -0.08 -2.35 10.03 22.29 0.22 -2.13 16 14 C -0.16 -6.61 9.25 22.40 0.21 -6.40 16 15 C -0.05 -2.21 6.14 23.04 0.14 -2.07 16 16 S -0.06 -3.08 18.15 -56.49 -1.03 -4.11 16 17 C -0.55 -32.62 9.62 67.96 0.65 -31.97 16 18 H 0.09 5.38 5.09 -2.91 -0.01 5.36 16 19 C 0.06 3.34 5.50 84.87 0.47 3.81 16 20 N -0.90 -54.40 13.96 21.65 0.30 -54.09 16 21 Si 0.90 44.81 27.74 68.60 1.90 46.71 16 22 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.25 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.25 -12.46 6.74 99.48 0.67 -11.79 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.12 1.25 8.10 -2.39 -0.02 1.23 16 29 H 0.10 1.72 4.31 -2.39 -0.01 1.71 16 30 H 0.11 2.17 8.07 -2.38 -0.02 2.15 16 31 H 0.06 1.88 7.49 -2.39 -0.02 1.86 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.16 2.73 7.36 -2.91 -0.02 2.71 16 38 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.11 5.41 4.98 -2.91 -0.01 5.40 16 41 H 0.28 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -76.81 364.73 4.73 -72.08 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.99 Total: 16.26 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 5.92 Total: -25.57 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.74 Total: -72.22 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Atomic # 16 Polarization: -9.28 SS G_CDS: -2.29 Total: -11.57 kcal Total: -76.81 4.73 -72.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844123596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.956 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds