Wall clock time and date at job start Tue Mar 31 2020 14:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31330 * 1 3 3 Si 1.86800 * 120.00035 * 2 1 4 4 H 1.48507 * 109.46868 * 275.01211 * 3 2 1 5 5 H 1.48504 * 109.47052 * 35.00724 * 3 2 1 6 6 H 1.48493 * 109.47141 * 155.01185 * 3 2 1 7 7 C 1.39121 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99870 * 1.51530 * 7 2 1 9 9 N 1.36708 * 120.00475 * 181.51113 * 7 2 1 10 10 C 1.34782 * 119.99807 * 306.51651 * 9 7 2 11 11 O 1.21759 * 120.00258 * 6.19218 * 10 9 7 12 12 C 1.46235 * 119.99698 * 186.18968 * 10 9 7 13 13 C 1.34981 * 119.99445 * 219.08002 * 12 10 9 14 14 C 1.47147 * 119.99325 * 170.07517 * 13 12 10 15 15 C 1.39879 * 120.17630 * 335.14939 * 14 13 12 16 16 C 1.37877 * 119.82344 * 179.78910 * 15 14 13 17 17 C 1.38411 * 120.17274 * 0.47260 * 16 15 14 18 18 C 1.38415 * 120.35441 * 359.78095 * 17 16 15 19 19 C 1.37878 * 120.17282 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.99902 * 38.80921 * 12 10 9 21 21 F 1.39899 * 109.46773 * 152.95617 * 20 12 10 22 22 F 1.39902 * 109.47091 * 272.95216 * 20 12 10 23 23 F 1.39895 * 109.47211 * 32.95293 * 20 12 10 24 24 C 1.46495 * 120.00277 * 126.51174 * 9 7 2 25 25 C 1.53002 * 117.49706 * 327.84658 * 24 9 7 26 26 C 1.53001 * 60.00245 * 252.50882 * 25 24 9 27 27 H 0.96997 * 119.99967 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00249 * 350.07861 * 13 12 10 29 29 H 1.08005 * 120.08358 * 0.03160 * 15 14 13 30 30 H 1.07994 * 119.91298 * 180.25240 * 16 15 14 31 31 H 1.08005 * 119.82359 * 179.76418 * 17 16 15 32 32 H 1.07995 * 119.91830 * 180.02562 * 18 17 16 33 33 H 1.08004 * 120.09091 * 180.02562 * 19 18 17 34 34 H 1.08997 * 115.55177 * 113.55254 * 24 9 7 35 35 H 1.09001 * 117.49992 * 359.97438 * 25 24 9 36 36 H 1.08998 * 117.49880 * 145.01825 * 25 24 9 37 37 H 1.08996 * 117.50331 * 252.51273 * 26 25 24 38 38 H 1.09003 * 117.51845 * 107.47807 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3889 2.1075 -1.3948 5 1 1.5016 2.6198 0.8032 6 1 3.5937 1.4119 0.5914 7 6 2.0089 -1.2048 0.0005 8 1 1.4692 -2.1400 -0.0238 9 7 3.3757 -1.2051 0.0318 10 6 4.0707 -0.4987 -0.8818 11 8 3.4851 0.2283 -1.6635 12 6 5.5282 -0.6055 -0.9341 13 6 6.2771 0.4918 -1.1732 14 6 7.7385 0.4347 -1.0112 15 6 8.3145 -0.5081 -0.1533 16 6 9.6849 -0.5581 -0.0103 17 6 10.4896 0.3279 -0.7055 18 6 9.9271 1.2672 -1.5523 19 6 8.5586 1.3267 -1.7100 20 6 6.1944 -1.9394 -0.7150 21 9 7.4234 -1.9620 -1.3829 22 9 6.4039 -2.1366 0.6541 23 9 5.3742 -2.9575 -1.2127 24 6 4.0848 -1.9730 1.0582 25 6 3.4116 -2.1158 2.4247 26 6 4.6305 -1.2052 2.2639 27 1 -0.4850 0.8400 0.0004 28 1 5.8036 1.4116 -1.4833 29 1 7.6875 -1.1976 0.3927 30 1 10.1313 -1.2880 0.6485 31 1 11.5623 0.2862 -0.5864 32 1 10.5617 1.9547 -2.0917 33 1 8.1211 2.0598 -2.3714 34 1 4.6685 -2.8182 0.6936 35 1 2.4412 -1.6380 2.5601 36 1 3.5522 -3.0552 2.9593 37 1 5.5731 -1.5455 2.6926 38 1 4.4623 -0.1286 2.2931 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875251535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:08 Heat of formation + Delta-G solvation = -55.097337 kcal Electronic energy + Delta-G solvation = -29561.998730 eV Core-core repulsion = 25151.396792 eV Total energy + Delta-G solvation = -4410.601938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.92246 -49.04956 -49.00654 -41.25982 -40.02597 -38.21413 -35.85828 -35.05197 -33.56759 -31.96260 -31.38994 -27.61469 -27.06907 -24.90556 -23.78553 -23.42691 -23.09940 -22.16109 -20.92811 -20.09607 -19.65659 -19.49565 -18.76054 -18.05493 -17.25968 -16.76528 -16.64967 -16.28370 -16.22469 -15.84389 -15.75716 -15.55615 -15.41583 -15.24892 -15.16352 -15.01562 -14.84336 -14.45775 -14.23374 -13.89013 -13.55005 -13.34894 -13.15205 -12.96669 -12.50517 -12.31748 -12.13730 -12.03401 -11.82285 -11.64773 -11.47138 -11.25173 -10.94249 -10.55366 -9.78677 -9.64041 -9.37685 -8.47461 -6.42289 -0.72795 0.50803 0.77216 1.20034 1.23130 1.38302 1.45159 1.90016 2.31689 2.42087 2.59984 2.78064 2.86436 2.92298 2.97861 3.18746 3.37491 3.78656 3.92596 3.98661 4.03662 4.07828 4.21920 4.25594 4.38595 4.48493 4.66485 4.74581 4.77705 4.87450 4.95330 5.09388 5.10815 5.36276 5.48050 5.49250 5.56300 5.58679 5.84510 6.01461 6.54443 6.68434 7.12613 7.59285 8.57723 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.005736 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.429997 B = 4880.283451 C = 5553.991797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.037 3.963 3 Si 0.996 3.004 4 H -0.289 1.289 5 H -0.316 1.316 6 H -0.278 1.278 7 C -0.331 4.331 8 H 0.071 0.929 9 N -0.435 5.435 10 C 0.509 3.491 11 O -0.580 6.580 12 C -0.279 4.279 13 C 0.056 3.944 14 C -0.134 4.134 15 C -0.116 4.116 16 C -0.143 4.143 17 C -0.087 4.087 18 C -0.140 4.140 19 C -0.083 4.083 20 C 0.522 3.478 21 F -0.152 7.152 22 F -0.147 7.147 23 F -0.174 7.174 24 C 0.008 3.992 25 C -0.152 4.152 26 C -0.167 4.167 27 H 0.276 0.724 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.271 -1.092 2.789 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.168 4.168 3 Si 0.831 3.169 4 H -0.218 1.218 5 H -0.248 1.248 6 H -0.204 1.204 7 C -0.459 4.459 8 H 0.089 0.911 9 N -0.154 5.154 10 C 0.301 3.699 11 O -0.469 6.469 12 C -0.284 4.284 13 C 0.036 3.964 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.161 4.161 17 C -0.105 4.105 18 C -0.157 4.157 19 C -0.101 4.101 20 C 0.467 3.533 21 F -0.133 7.133 22 F -0.128 7.128 23 F -0.156 7.156 24 C -0.095 4.095 25 C -0.189 4.189 26 C -0.204 4.204 27 H 0.085 0.915 28 H 0.165 0.835 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.775 -0.776 2.450 23.914 hybrid contribution -0.707 0.520 -0.347 0.944 sum 23.068 -0.256 2.104 23.165 Atomic orbital electron populations 1.69705 1.07693 1.28963 1.48190 1.26204 0.95733 1.02298 0.92525 0.84773 0.77447 0.78458 0.76224 1.21765 1.24806 1.20399 1.18601 0.79481 0.93853 1.53937 0.91137 1.43073 1.05156 1.42939 1.24185 1.18083 0.86615 0.83754 0.81419 1.90415 1.70365 1.42119 1.43999 1.21966 0.94369 0.94604 1.17432 1.22658 0.93165 0.96804 0.83752 1.19009 0.90447 1.01015 1.02932 1.23049 0.98213 0.95548 0.96500 1.21341 0.92458 1.00915 1.01405 1.21791 1.01464 0.93345 0.93881 1.21412 0.94182 1.00156 0.99974 1.21596 0.94479 0.96697 0.97288 1.17889 0.76261 0.84952 0.74167 1.93211 1.43307 1.96322 1.80480 1.92875 1.93310 1.95152 1.31450 1.93192 1.72603 1.62312 1.87456 1.22881 1.02365 0.99357 0.84918 1.23147 0.97066 1.02427 0.96244 1.23432 0.99259 0.97753 1.00004 0.91452 0.83509 0.83714 0.83494 0.82731 0.82867 0.84223 0.85058 0.90239 0.85112 0.84728 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.98 13.95 21.69 0.30 -56.68 16 2 C 0.04 2.22 5.32 84.98 0.45 2.67 16 3 Si 1.00 54.06 24.17 68.60 1.66 55.72 16 4 H -0.29 -16.60 6.62 99.48 0.66 -15.94 16 5 H -0.32 -16.57 7.11 99.48 0.71 -15.86 16 6 H -0.28 -14.16 6.44 99.48 0.64 -13.52 16 7 C -0.33 -19.35 8.61 84.15 0.72 -18.63 16 8 H 0.07 4.43 8.06 -2.91 -0.02 4.41 16 9 N -0.44 -21.57 2.39 -618.10 -1.47 -23.04 16 10 C 0.51 24.93 4.77 86.32 0.41 25.34 16 11 O -0.58 -32.76 11.81 -4.54 -0.05 -32.81 16 12 C -0.28 -10.55 4.99 -18.53 -0.09 -10.64 16 13 C 0.06 1.82 9.35 23.86 0.22 2.04 16 14 C -0.13 -3.47 4.92 -20.14 -0.10 -3.57 16 15 C -0.12 -2.74 6.47 22.58 0.15 -2.59 16 16 C -0.14 -2.56 10.03 22.23 0.22 -2.34 16 17 C -0.09 -1.27 10.04 22.35 0.22 -1.05 16 18 C -0.14 -2.18 10.03 22.23 0.22 -1.96 16 19 C -0.08 -1.70 9.80 22.58 0.22 -1.48 16 20 C 0.52 16.64 2.00 71.24 0.14 16.79 16 21 F -0.15 -4.31 12.43 44.97 0.56 -3.75 16 22 F -0.15 -4.00 9.32 44.97 0.42 -3.58 16 23 F -0.17 -6.22 15.01 44.97 0.68 -5.54 16 24 C 0.01 0.31 3.63 45.00 0.16 0.47 16 25 C -0.15 -5.23 9.89 30.60 0.30 -4.92 16 26 C -0.17 -5.36 9.27 30.60 0.28 -5.07 16 27 H 0.28 16.29 8.31 -92.71 -0.77 15.52 16 28 H 0.15 4.81 7.90 -2.91 -0.02 4.79 16 29 H 0.15 3.54 3.09 -2.91 -0.01 3.53 16 30 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 32 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.13 4.57 4.38 -2.39 -0.01 4.56 16 35 H 0.08 3.29 7.55 -2.39 -0.02 3.27 16 36 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.13 3.24 7.42 -2.39 -0.02 3.22 16 38 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -74.27 313.57 6.64 -67.64 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.00 Total: 6.99 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 3.55 Total: -4.94 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.17 Total: -79.72 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.05 Total: -32.81 kcal Atomic # 9 Polarization: -14.53 SS G_CDS: 1.65 Total: -12.87 kcal Atomic # 14 Polarization: 54.06 SS G_CDS: 1.66 Total: 55.72 kcal Total: -74.27 6.64 -67.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875251535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.538 kcal (2) G-P(sol) polarization free energy of solvation -74.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds