Wall clock time and date at job start Tue Mar 31 2020 14:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38233 * 120.00060 * 269.73288 * 10 9 7 12 12 C 1.38232 * 119.99735 * 179.76681 * 11 10 9 13 13 C 1.38236 * 120.00328 * 0.48227 * 12 11 10 14 14 S 1.76203 * 120.00324 * 179.76932 * 13 12 11 15 15 O 1.42101 * 106.40028 * 23.56323 * 14 13 12 16 16 O 1.42098 * 106.40155 * 156.48163 * 14 13 12 17 17 N 1.65599 * 107.21703 * 270.02094 * 14 13 12 18 18 C 1.46500 * 119.99879 * 65.00041 * 17 14 13 19 19 H 1.09003 * 109.47192 * 25.00191 * 18 17 14 20 20 C 1.52995 * 109.47173 * 264.99687 * 18 17 14 21 21 O 1.42898 * 109.47476 * 295.00240 * 20 18 17 22 22 C 1.53002 * 109.47129 * 144.99522 * 18 17 14 23 23 C 1.52998 * 117.50288 * 248.74896 * 22 18 17 24 24 C 1.53003 * 117.50162 * 180.08483 * 22 18 17 25 25 C 1.38233 * 119.99593 * 359.78981 * 13 12 11 26 26 C 1.38231 * 119.99766 * 90.00279 * 10 9 7 27 27 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 29 29 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 30 30 H 1.08002 * 120.00409 * 359.97438 * 11 10 9 31 31 H 1.08008 * 119.99912 * 180.25278 * 12 11 10 32 32 H 0.96990 * 119.99978 * 244.99570 * 17 14 13 33 33 H 1.09000 * 109.47135 * 55.00226 * 20 18 17 34 34 H 1.09005 * 109.47308 * 175.00245 * 20 18 17 35 35 H 0.96698 * 114.00573 * 180.02562 * 21 20 18 36 36 H 1.09007 * 115.54579 * 34.41985 * 22 18 17 37 37 H 1.09001 * 117.49646 * 359.97438 * 23 22 18 38 38 H 1.09001 * 117.50149 * 145.02106 * 23 22 18 39 39 H 1.08996 * 117.49742 * 214.98330 * 24 22 18 40 40 H 1.09001 * 117.49248 * 0.02562 * 24 22 18 41 41 H 1.08000 * 120.00181 * 179.97438 * 25 13 12 42 42 H 1.08003 * 120.00554 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0139 -2.6148 -0.0107 11 6 4.2547 -3.2669 1.1841 12 6 4.7109 -4.5718 1.1796 13 6 4.9359 -5.2212 -0.0198 14 16 5.5232 -6.8825 -0.0256 15 8 5.1488 -7.4448 1.2246 16 8 5.1385 -7.4397 -1.2749 17 7 7.1779 -6.8173 -0.0324 18 6 7.8935 -6.2551 1.1157 19 1 7.2753 -6.3453 2.0089 20 6 8.1985 -4.7790 0.8534 21 8 9.1030 -4.6677 -0.2473 22 6 9.2036 -7.0176 1.3233 23 6 9.3208 -7.8941 2.5718 24 6 10.0999 -6.5794 2.4833 25 6 4.7005 -4.5671 -1.2147 26 6 4.2393 -3.2640 -1.2101 27 1 -0.4850 0.8400 -0.0004 28 1 3.8713 -0.6783 -0.8962 29 1 3.8786 -0.6819 0.8837 30 1 4.0831 -2.7581 2.1212 31 1 4.8951 -5.0827 2.1132 32 1 7.6733 -7.1515 -0.7963 33 1 7.2733 -4.2530 0.6180 34 1 8.6512 -4.3381 1.7416 35 1 9.3414 -3.7574 -0.4701 36 1 9.6924 -7.3685 0.4143 37 1 8.4646 -7.9272 3.2456 38 1 9.8870 -8.8214 2.4845 39 1 11.1783 -6.6424 2.3377 40 1 9.7559 -5.7482 3.0988 41 1 4.8767 -5.0743 -2.1518 42 1 4.0558 -2.7529 -2.1437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885027499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:24 Heat of formation + Delta-G solvation = -80.022054 kcal Electronic energy + Delta-G solvation = -25633.635761 eV Core-core repulsion = 21899.253698 eV Total energy + Delta-G solvation = -3734.382063 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.09305 -38.83135 -37.14570 -36.32616 -35.79510 -34.33661 -33.71901 -31.78197 -30.69762 -28.69207 -27.99750 -24.05167 -23.52124 -22.56897 -22.45949 -20.81460 -20.67977 -19.46498 -18.08827 -17.46764 -17.29274 -16.94446 -16.75884 -15.69291 -15.15513 -15.08368 -14.87527 -14.41077 -14.33921 -14.06835 -13.94873 -13.53390 -13.21723 -12.80235 -12.71812 -12.65504 -12.08113 -12.06374 -11.97118 -11.92966 -11.81942 -11.81751 -11.44909 -11.05195 -10.96258 -10.71802 -10.57050 -10.43552 -10.30658 -10.14967 -10.11014 -9.63693 -9.54144 -8.73675 -8.68239 -8.48480 -6.21480 -4.23327 0.45650 1.21390 1.68089 2.97377 3.17307 3.25668 3.26265 3.50907 3.72791 3.96920 4.03260 4.27424 4.30700 4.43044 4.58856 4.70304 4.81969 4.96818 5.06208 5.08749 5.14514 5.16909 5.22528 5.38092 5.43218 5.52938 5.62487 5.66076 5.77359 5.77689 5.84301 6.02065 6.10811 6.19838 6.39677 6.65064 6.66129 6.76545 6.85161 7.24202 7.25561 7.41623 7.50112 8.31348 8.82177 9.36539 10.91061 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.018289 B = 0.003329 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.638232 B = 8408.277287 C = 9143.284861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.031 3.969 11 C -0.143 4.143 12 C -0.027 4.027 13 C -0.701 4.701 14 S 2.695 3.305 15 O -0.964 6.964 16 O -0.963 6.963 17 N -1.105 6.105 18 C 0.184 3.816 19 H 0.104 0.896 20 C 0.055 3.945 21 O -0.562 6.562 22 C -0.144 4.144 23 C -0.183 4.183 24 C -0.171 4.171 25 C -0.017 4.017 26 C -0.143 4.143 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.420 0.580 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.378 0.622 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.131 0.869 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.318 -10.779 2.879 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.093 0.907 9 C -0.031 4.031 10 C 0.031 3.969 11 C -0.162 4.162 12 C -0.046 4.046 13 C -0.790 4.790 14 S 2.788 3.212 15 O -0.953 6.953 16 O -0.954 6.954 17 N -0.863 5.863 18 C 0.076 3.924 19 H 0.122 0.878 20 C -0.025 4.025 21 O -0.367 6.367 22 C -0.163 4.163 23 C -0.220 4.220 24 C -0.209 4.209 25 C -0.037 4.037 26 C -0.162 4.162 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.255 0.745 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.225 0.775 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.149 0.851 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.474 -12.028 3.054 23.941 hybrid contribution 0.455 2.266 -0.365 2.340 sum 20.929 -9.762 2.690 23.250 Atomic orbital electron populations 1.69889 1.06279 1.27249 1.49730 1.24990 0.94765 0.99062 0.94210 0.86787 0.80300 0.83566 0.78729 1.20035 1.21049 1.18976 1.20818 0.87662 0.94951 1.52418 0.90655 1.18982 0.97952 0.88164 0.97966 1.20696 0.86247 0.97654 0.92320 1.21206 1.01555 0.94663 0.98758 1.20771 0.93806 0.94352 0.95706 1.30403 1.23212 1.25475 0.99892 1.01657 0.71974 0.74132 0.73459 1.93564 1.81414 1.75909 1.44457 1.93574 1.80935 1.76995 1.43864 1.55510 1.25423 1.77742 1.27646 1.20458 0.92745 0.90804 0.88364 0.87776 1.22824 0.93639 0.96330 0.89712 1.86441 1.66177 1.32298 1.51781 1.22268 0.96981 1.02987 0.94096 1.23155 1.03249 0.94966 1.00609 1.22934 0.98190 0.98471 1.01315 1.20770 0.92801 0.94190 0.95901 1.21228 1.01461 0.94730 0.98745 0.92338 0.95275 0.94849 0.85253 0.85213 0.74537 0.92279 0.92659 0.77548 0.86906 0.88299 0.88657 0.88612 0.88689 0.85080 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 20.33 27.46 -169.99 -4.67 15.66 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -5.78 6.55 56.52 0.37 -5.41 16 7 C -0.52 -14.12 9.65 -34.44 -0.33 -14.45 16 8 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 9 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 10 C 0.03 0.60 5.07 -104.62 -0.53 0.07 16 11 C -0.14 -2.44 9.70 -39.59 -0.38 -2.83 16 12 C -0.03 -0.40 8.70 -39.58 -0.34 -0.75 16 13 C -0.70 -10.45 4.95 -39.58 -0.20 -10.65 16 14 S 2.70 36.80 5.72 -107.50 -0.61 36.19 16 15 O -0.96 -15.18 16.62 -57.17 -0.95 -16.13 16 16 O -0.96 -15.64 17.28 -57.17 -0.99 -16.63 16 17 N -1.11 -11.28 5.42 -4.89 -0.03 -11.31 16 18 C 0.18 1.70 2.93 -67.93 -0.20 1.50 16 19 H 0.10 0.94 7.26 -51.93 -0.38 0.56 16 20 C 0.05 0.48 6.65 37.15 0.25 0.72 16 21 O -0.56 -4.83 13.09 -35.23 -0.46 -5.29 16 22 C -0.14 -1.17 4.91 -90.62 -0.44 -1.61 16 23 C -0.18 -1.37 10.18 -26.69 -0.27 -1.64 16 24 C -0.17 -1.18 9.80 -26.69 -0.26 -1.44 16 25 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 26 C -0.14 -2.50 9.70 -39.58 -0.38 -2.88 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.62 7.51 -51.93 -0.39 0.23 16 29 H 0.03 0.72 7.15 -51.93 -0.37 0.35 16 30 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.13 1.64 7.62 -52.48 -0.40 1.24 16 32 H 0.42 3.68 8.82 -34.47 -0.30 3.38 16 33 H 0.06 0.58 6.17 -51.93 -0.32 0.26 16 34 H 0.06 0.40 7.48 -51.93 -0.39 0.01 16 35 H 0.38 2.02 9.12 45.56 0.42 2.44 16 36 H 0.11 0.92 8.12 -51.92 -0.42 0.50 16 37 H 0.10 0.75 8.05 -51.93 -0.42 0.34 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 41 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 42 H 0.13 2.14 8.06 -52.48 -0.42 1.71 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -34.23 362.97 -10.21 -44.44 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.05 Total: 6.12 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -3.70 Total: -32.67 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.75 Total: -37.14 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -2.40 Total: -38.06 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Atomic # 16 Polarization: 36.80 SS G_CDS: -0.61 Total: 36.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.23 -10.21 -44.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.586 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds