Wall clock time and date at job start Tue Mar 31 2020 14:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38233 * 120.00060 * 269.73288 * 10 9 7 12 12 C 1.38232 * 119.99735 * 179.76681 * 11 10 9 13 13 C 1.38236 * 120.00328 * 0.48227 * 12 11 10 14 14 S 1.76203 * 120.00324 * 179.76932 * 13 12 11 15 15 O 1.42101 * 106.40028 * 23.56323 * 14 13 12 16 16 O 1.42098 * 106.40155 * 156.48163 * 14 13 12 17 17 N 1.65599 * 107.21703 * 270.02094 * 14 13 12 18 18 C 1.46500 * 119.99879 * 65.00041 * 17 14 13 19 19 H 1.09003 * 109.47192 * 25.00191 * 18 17 14 20 20 C 1.52995 * 109.47173 * 264.99687 * 18 17 14 21 21 O 1.42898 * 109.47476 * 295.00240 * 20 18 17 22 22 C 1.53002 * 109.47129 * 144.99522 * 18 17 14 23 23 C 1.52998 * 117.50288 * 248.74896 * 22 18 17 24 24 C 1.53003 * 117.50162 * 180.08483 * 22 18 17 25 25 C 1.38233 * 119.99593 * 359.78981 * 13 12 11 26 26 C 1.38231 * 119.99766 * 90.00279 * 10 9 7 27 27 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 29 29 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 30 30 H 1.08002 * 120.00409 * 359.97438 * 11 10 9 31 31 H 1.08008 * 119.99912 * 180.25278 * 12 11 10 32 32 H 0.96990 * 119.99978 * 244.99570 * 17 14 13 33 33 H 1.09000 * 109.47135 * 55.00226 * 20 18 17 34 34 H 1.09005 * 109.47308 * 175.00245 * 20 18 17 35 35 H 0.96698 * 114.00573 * 180.02562 * 21 20 18 36 36 H 1.09007 * 115.54579 * 34.41985 * 22 18 17 37 37 H 1.09001 * 117.49646 * 359.97438 * 23 22 18 38 38 H 1.09001 * 117.50149 * 145.02106 * 23 22 18 39 39 H 1.08996 * 117.49742 * 214.98330 * 24 22 18 40 40 H 1.09001 * 117.49248 * 0.02562 * 24 22 18 41 41 H 1.08000 * 120.00181 * 179.97438 * 25 13 12 42 42 H 1.08003 * 120.00554 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0139 -2.6148 -0.0107 11 6 4.2547 -3.2669 1.1841 12 6 4.7109 -4.5718 1.1796 13 6 4.9359 -5.2212 -0.0198 14 16 5.5232 -6.8825 -0.0256 15 8 5.1488 -7.4448 1.2246 16 8 5.1385 -7.4397 -1.2749 17 7 7.1779 -6.8173 -0.0324 18 6 7.8935 -6.2551 1.1157 19 1 7.2753 -6.3453 2.0089 20 6 8.1985 -4.7790 0.8534 21 8 9.1030 -4.6677 -0.2473 22 6 9.2036 -7.0176 1.3233 23 6 9.3208 -7.8941 2.5718 24 6 10.0999 -6.5794 2.4833 25 6 4.7005 -4.5671 -1.2147 26 6 4.2393 -3.2640 -1.2101 27 1 -0.4850 0.8400 -0.0004 28 1 3.8713 -0.6783 -0.8962 29 1 3.8786 -0.6819 0.8837 30 1 4.0831 -2.7581 2.1212 31 1 4.8951 -5.0827 2.1132 32 1 7.6733 -7.1515 -0.7963 33 1 7.2733 -4.2530 0.6180 34 1 8.6512 -4.3381 1.7416 35 1 9.3414 -3.7574 -0.4701 36 1 9.6924 -7.3685 0.4143 37 1 8.4646 -7.9272 3.2456 38 1 9.8870 -8.8214 2.4845 39 1 11.1783 -6.6424 2.3377 40 1 9.7559 -5.7482 3.0988 41 1 4.8767 -5.0743 -2.1518 42 1 4.0558 -2.7529 -2.1437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885027499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:23 Heat of formation + Delta-G solvation = -106.217277 kcal Electronic energy + Delta-G solvation = -25634.771671 eV Core-core repulsion = 21899.253698 eV Total energy + Delta-G solvation = -3735.517974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.30677 -39.59879 -38.34334 -37.01600 -36.91846 -35.55340 -35.09996 -33.55687 -31.98331 -29.74624 -29.38163 -25.30523 -24.65909 -23.77015 -23.08368 -22.31348 -21.40180 -20.52750 -19.14158 -19.03063 -18.46099 -18.06788 -17.60774 -16.81715 -16.68450 -16.04156 -15.99177 -15.62863 -15.37218 -15.32758 -14.80880 -14.62564 -14.48844 -14.22011 -14.13167 -13.62721 -13.52049 -13.43224 -13.26214 -13.19049 -12.96245 -12.57674 -12.53506 -12.34798 -12.12416 -12.06605 -11.93386 -11.72512 -11.58005 -11.29972 -11.02504 -10.83045 -10.81659 -10.39622 -9.96662 -9.91546 -8.33774 -6.41262 -0.66354 -0.09441 0.38555 1.36318 1.37924 1.49272 1.95526 2.32429 2.51928 2.76624 2.95869 3.00806 3.27392 3.38940 3.72409 3.84693 3.95147 3.98800 4.07413 4.08892 4.20091 4.32129 4.45044 4.45411 4.46341 4.62564 4.75543 4.77484 4.84911 4.87533 4.99683 5.03493 5.09107 5.11415 5.17182 5.28247 5.32920 5.39209 5.49326 5.77409 5.92566 6.07521 6.18771 6.65795 6.94400 7.22841 8.82766 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.018289 B = 0.003329 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.638232 B = 8408.277287 C = 9143.284861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.527 4.527 8 H 0.026 0.974 9 C 0.012 3.988 10 C 0.000 4.000 11 C -0.150 4.150 12 C -0.022 4.022 13 C -0.697 4.697 14 S 2.720 3.280 15 O -0.982 6.982 16 O -0.988 6.988 17 N -1.091 6.091 18 C 0.175 3.825 19 H 0.107 0.893 20 C 0.056 3.944 21 O -0.573 6.573 22 C -0.152 4.152 23 C -0.188 4.188 24 C -0.162 4.162 25 C -0.019 4.019 26 C -0.153 4.153 27 H 0.269 0.731 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.428 0.572 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.392 0.608 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.150 0.850 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.301 -10.668 3.411 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.162 1.162 7 C -0.564 4.564 8 H 0.044 0.956 9 C -0.025 4.025 10 C 0.000 4.000 11 C -0.169 4.169 12 C -0.041 4.041 13 C -0.785 4.785 14 S 2.810 3.190 15 O -0.972 6.972 16 O -0.979 6.979 17 N -0.852 5.852 18 C 0.068 3.932 19 H 0.125 0.875 20 C -0.024 4.024 21 O -0.380 6.380 22 C -0.172 4.172 23 C -0.225 4.225 24 C -0.199 4.199 25 C -0.038 4.038 26 C -0.172 4.172 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.155 0.845 31 H 0.174 0.826 32 H 0.265 0.735 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.240 0.760 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.167 0.833 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 23.478 -11.914 3.577 26.570 hybrid contribution -0.434 2.063 -0.523 2.172 sum 23.044 -9.851 3.054 25.246 Atomic orbital electron populations 1.70063 1.08516 1.28478 1.51772 1.26024 0.95599 1.03591 0.93698 0.85608 0.79633 0.77721 0.79407 1.19003 1.21069 1.16219 1.21078 0.90622 0.93085 1.51650 0.95586 1.18825 0.94367 0.90671 0.98630 1.20569 0.88759 0.96796 0.93868 1.21340 1.01601 0.95558 0.98372 1.21032 0.92569 0.93582 0.96889 1.30728 1.22046 1.25979 0.99700 1.00881 0.72537 0.73158 0.72378 1.93541 1.82375 1.76034 1.45208 1.93538 1.82049 1.77332 1.44940 1.55194 1.23912 1.77577 1.28533 1.20690 0.93234 0.91455 0.87810 0.87528 1.22788 0.93374 0.95702 0.90540 1.86405 1.66018 1.33773 1.51797 1.22216 0.96743 1.03677 0.94522 1.23230 1.03489 0.95672 1.00106 1.23022 0.98502 0.98265 1.00150 1.20974 0.92185 0.93557 0.97083 1.21327 1.01798 0.95613 0.98417 0.92234 0.94298 0.93877 0.84546 0.82624 0.73458 0.93556 0.90831 0.75956 0.86971 0.88592 0.87958 0.87749 0.87948 0.83264 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.37 13.96 21.45 0.30 -58.07 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.95 41.66 27.46 68.60 1.88 43.54 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.24 -9.35 6.55 99.48 0.65 -8.70 16 7 C -0.53 -29.37 9.65 25.60 0.25 -29.12 16 8 H 0.03 1.65 7.98 -2.91 -0.02 1.62 16 9 C 0.01 0.53 4.17 29.10 0.12 0.66 16 10 C 0.00 0.02 5.07 -19.87 -0.10 -0.09 16 11 C -0.15 -5.01 9.70 22.27 0.22 -4.79 16 12 C -0.02 -0.62 8.70 22.27 0.19 -0.42 16 13 C -0.70 -19.82 4.95 22.27 0.11 -19.71 16 14 S 2.72 70.02 5.72 -56.49 -0.32 69.70 16 15 O -0.98 -29.32 16.62 -128.00 -2.13 -31.45 16 16 O -0.99 -30.83 17.28 -128.00 -2.21 -33.04 16 17 N -1.09 -20.14 5.42 -169.39 -0.92 -21.05 16 18 C 0.18 2.83 2.93 44.99 0.13 2.96 16 19 H 0.11 1.67 7.26 -2.39 -0.02 1.65 16 20 C 0.06 0.83 6.65 71.98 0.48 1.31 16 21 O -0.57 -8.45 13.09 -148.98 -1.95 -10.40 16 22 C -0.15 -2.11 4.91 -10.79 -0.05 -2.17 16 23 C -0.19 -2.40 10.18 30.62 0.31 -2.09 16 24 C -0.16 -1.79 9.80 30.62 0.30 -1.49 16 25 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 26 C -0.15 -5.30 9.70 22.27 0.22 -5.08 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.04 1.61 7.51 -2.39 -0.02 1.59 16 29 H 0.04 1.79 7.15 -2.38 -0.02 1.77 16 30 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 31 H 0.16 3.57 7.62 -2.91 -0.02 3.55 16 32 H 0.43 6.66 8.82 -96.76 -0.85 5.81 16 33 H 0.05 0.81 6.17 -2.39 -0.01 0.80 16 34 H 0.07 0.84 7.48 -2.38 -0.02 0.82 16 35 H 0.39 3.26 9.12 -74.06 -0.68 2.59 16 36 H 0.11 1.58 8.12 -2.38 -0.02 1.56 16 37 H 0.10 1.28 8.05 -2.39 -0.02 1.26 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.10 0.98 7.67 -2.39 -0.02 0.97 16 41 H 0.15 3.90 7.62 -2.91 -0.02 3.88 16 42 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -74.83 362.97 -3.03 -77.86 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.53 Total: 22.36 kcal Atomic # 6 Polarization: -62.30 SS G_CDS: 2.85 Total: -59.45 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -0.62 Total: -79.12 kcal Atomic # 8 Polarization: -68.60 SS G_CDS: -6.29 Total: -74.89 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.88 Total: 43.54 kcal Atomic # 16 Polarization: 70.02 SS G_CDS: -0.32 Total: 69.70 kcal Total: -74.83 -3.03 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.354 kcal (2) G-P(sol) polarization free energy of solvation -74.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds