Wall clock time and date at job start Tue Mar 31 2020 14:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35521 * 116.99808 * 2 1 4 4 N 1.32409 * 119.53007 * 359.73425 * 3 2 1 5 5 C 1.31652 * 121.80909 * 179.70859 * 4 3 2 6 6 C 1.39546 * 120.65114 * 0.55959 * 5 4 3 7 7 C 1.47617 * 120.49423 * 179.75126 * 6 5 4 8 8 O 1.21583 * 119.99941 * 179.97438 * 7 6 5 9 9 N 1.34781 * 120.00358 * 359.97206 * 7 6 5 10 10 C 1.46498 * 120.00417 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.88693 * 328.89124 * 10 9 7 12 12 C 1.55148 * 111.00838 * 205.00366 * 10 9 7 13 13 C 1.54322 * 102.94443 * 277.43577 * 12 10 9 14 14 N 1.47021 * 107.26839 * 337.79988 * 13 12 10 15 15 C 1.36937 * 125.64502 * 178.98738 * 14 13 12 16 16 H 1.08005 * 119.99777 * 179.97438 * 15 14 13 17 17 C 1.38806 * 120.00417 * 359.97438 * 15 14 13 18 18 N 1.31624 * 119.99954 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46900 * 90.00479 * 19 17 15 21 21 H 1.48501 * 109.47142 * 209.99997 * 19 17 15 22 22 H 1.48498 * 109.47213 * 330.00478 * 19 17 15 23 23 C 1.47424 * 108.70634 * 358.94543 * 14 13 12 24 24 C 1.40244 * 119.01351 * 359.72868 * 6 5 4 25 25 C 1.38080 * 118.34621 * 359.97438 * 24 6 5 26 26 Cl 1.73597 * 120.38443 * 180.02562 * 25 24 6 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47054 * 299.99618 * 1 2 3 29 29 H 1.09000 * 109.47187 * 59.99674 * 1 2 3 30 30 H 1.08003 * 119.67400 * 180.26816 * 5 4 3 31 31 H 0.97003 * 119.99257 * 0.02562 * 9 7 6 32 32 H 1.09008 * 110.71875 * 35.79659 * 12 10 9 33 33 H 1.08999 * 110.72196 * 159.06327 * 12 10 9 34 34 H 1.08999 * 109.88691 * 97.22037 * 13 12 10 35 35 H 1.09007 * 109.87809 * 218.39153 * 13 12 10 36 36 H 0.96997 * 119.99650 * 179.97438 * 18 17 15 37 37 H 1.08997 * 110.36563 * 265.28739 * 23 14 13 38 38 H 1.09001 * 110.36713 * 142.95846 * 23 14 13 39 39 H 1.08005 * 120.83081 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3140 2.3120 -0.0053 5 6 1.8645 3.5079 0.0001 6 6 3.2525 3.6522 0.0001 7 6 3.8661 4.9948 0.0007 8 8 5.0764 5.1100 0.0012 9 7 3.0846 6.0929 0.0007 10 6 3.6935 7.4254 0.0018 11 1 4.6477 7.4161 0.5287 12 6 2.7304 8.4765 0.6138 13 6 1.8104 8.8344 -0.5724 14 7 2.5334 8.4890 -1.8051 15 6 2.0534 8.6350 -3.0792 16 1 2.6654 8.3510 -3.9226 17 6 0.7804 9.1478 -3.2869 18 7 0.0347 9.4944 -2.2591 19 14 0.1260 9.3475 -5.0251 20 1 -0.5775 8.1055 -5.4349 21 1 -0.8213 10.4904 -5.0692 22 1 1.2563 9.6054 -5.9531 23 6 3.8609 7.9605 -1.4423 24 6 4.0558 2.5026 0.0000 25 6 3.4353 1.2691 0.0005 26 17 4.3784 -0.1883 0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 1.2357 4.3860 -0.0002 31 1 2.1190 6.0009 0.0006 32 1 2.1545 8.0422 1.4311 33 1 3.2817 9.3536 0.9528 34 1 0.8862 8.2599 -0.5113 35 1 1.5877 9.9014 -0.5599 36 1 -0.8547 9.8531 -2.4043 37 1 4.6059 8.7558 -1.4682 38 1 4.1444 7.1519 -2.1160 39 1 5.1331 2.5801 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016324314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:14 Heat of formation + Delta-G solvation = -8.947786 kcal Electronic energy + Delta-G solvation = -24937.599234 eV Core-core repulsion = 21100.715133 eV Total energy + Delta-G solvation = -3836.884102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16618 -39.64683 -38.13470 -37.17354 -36.84202 -33.92201 -32.70773 -32.13881 -30.87572 -29.20967 -27.87611 -27.12801 -24.78082 -24.26829 -23.63741 -21.17892 -20.15401 -19.94513 -18.89709 -17.94970 -17.66032 -16.81389 -16.48927 -15.85359 -15.60340 -14.88317 -14.72561 -14.59658 -14.49454 -13.93760 -13.85823 -13.70200 -13.31477 -13.18127 -12.51641 -12.28633 -12.23362 -11.98260 -11.86296 -11.51376 -11.38706 -11.01201 -10.92756 -10.79226 -10.51943 -10.29704 -10.16988 -10.05500 -10.00941 -9.72402 -9.68993 -8.92312 -8.73697 -8.56996 -6.86988 -5.76392 -3.09107 0.36868 0.69023 1.74529 2.59042 2.73396 3.26593 3.37241 3.43314 3.44610 3.56091 3.85890 4.36822 4.46723 4.53379 4.72422 4.79393 4.98960 5.03724 5.18655 5.29723 5.35905 5.42283 5.44111 5.63903 5.71247 5.77012 5.83290 6.12999 6.30364 6.42575 6.43429 6.63855 6.69677 6.93315 7.27904 7.48098 7.50755 7.69563 7.75744 8.20104 8.32223 9.17818 9.77566 10.42741 11.35459 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003247 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.318633 B = 8622.098481 C = 9614.154879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.293 6.293 3 C 0.351 3.649 4 N -0.526 5.526 5 C 0.187 3.813 6 C -0.207 4.207 7 C 0.567 3.433 8 O -0.542 6.542 9 N -0.696 5.696 10 C 0.128 3.872 11 H 0.094 0.906 12 C -0.154 4.154 13 C 0.175 3.825 14 N -0.604 5.604 15 C -0.226 4.226 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.923 5.923 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.125 3.875 24 C 0.024 3.976 25 C -0.120 4.120 26 Cl -0.039 7.039 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.174 0.826 31 H 0.402 0.598 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.252 0.748 37 H 0.030 0.970 38 H 0.043 0.957 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -16.518 8.760 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.199 6.199 3 C 0.171 3.829 4 N -0.249 5.249 5 C 0.029 3.971 6 C -0.213 4.213 7 C 0.353 3.647 8 O -0.421 6.421 9 N -0.346 5.346 10 C 0.022 3.978 11 H 0.111 0.889 12 C -0.193 4.193 13 C 0.050 3.950 14 N -0.331 5.331 15 C -0.354 4.354 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.571 5.571 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.002 4.002 24 C -0.002 4.002 25 C -0.149 4.149 26 Cl -0.011 7.011 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.191 0.809 31 H 0.237 0.763 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.694 -16.824 8.644 19.106 hybrid contribution -0.303 0.210 -1.018 1.083 sum 2.390 -16.614 7.626 18.436 Atomic orbital electron populations 1.23005 0.76297 1.03469 1.03102 1.86286 1.23596 1.23504 1.86474 1.19738 0.87706 0.85700 0.89713 1.67533 1.39053 0.98253 1.20097 1.22880 0.91882 0.94124 0.88219 1.20877 0.94523 0.94909 1.11008 1.17674 0.86678 0.83469 0.76858 1.90773 1.13608 1.86871 1.50812 1.45746 1.10157 1.05520 1.73134 1.22213 0.96755 0.80423 0.98363 0.88851 1.23242 0.98723 0.97622 0.99697 1.21191 0.92212 0.99781 0.81836 1.44484 1.11616 1.74538 1.02469 1.19054 0.97878 1.36011 0.82455 0.90543 1.24761 0.96849 1.01304 0.97430 1.69944 1.10327 1.49023 1.27808 0.86139 0.78603 0.77325 0.83824 1.21664 1.21678 1.20728 1.21952 0.89479 0.96008 0.92803 1.21476 1.02001 0.88055 0.88650 1.20702 0.89368 0.90076 1.14796 1.98380 1.71307 1.34265 1.97112 0.88164 0.91778 0.91651 0.80890 0.76268 0.91500 0.90761 0.93574 0.93677 0.93786 0.95271 0.93867 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.37 101.05 1.05 1.34 16 2 O -0.29 -3.22 9.93 -18.26 -0.18 -3.40 16 3 C 0.35 4.27 7.49 -16.93 -0.13 4.14 16 4 N -0.53 -6.47 9.18 -12.94 -0.12 -6.58 16 5 C 0.19 2.23 10.71 -17.14 -0.18 2.05 16 6 C -0.21 -2.69 5.89 -104.83 -0.62 -3.31 16 7 C 0.57 8.69 7.77 -12.43 -0.10 8.60 16 8 O -0.54 -9.76 16.05 5.29 0.08 -9.68 16 9 N -0.70 -10.58 5.14 -52.74 -0.27 -10.85 16 10 C 0.13 2.14 3.43 -65.78 -0.23 1.91 16 11 H 0.09 1.51 7.54 -51.93 -0.39 1.11 16 12 C -0.15 -2.55 6.55 -24.90 -0.16 -2.71 16 13 C 0.17 3.87 5.36 -3.07 -0.02 3.85 16 14 N -0.60 -14.58 3.39 -170.07 -0.58 -15.15 16 15 C -0.23 -6.10 10.28 -15.06 -0.15 -6.25 16 16 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -25.90 10.31 55.49 0.57 -25.33 16 19 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.12 2.54 6.93 -2.52 -0.02 2.52 16 24 C 0.02 0.30 9.50 -38.89 -0.37 -0.07 16 25 C -0.12 -1.42 6.35 -39.27 -0.25 -1.67 16 26 Cl -0.04 -0.42 28.52 -51.86 -1.48 -1.90 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.17 1.79 6.41 -52.48 -0.34 1.45 16 31 H 0.40 5.64 6.72 -40.82 -0.27 5.36 16 32 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.05 1.10 7.38 -51.93 -0.38 0.72 16 35 H 0.05 1.13 7.51 -51.93 -0.39 0.74 16 36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.16 1.88 7.73 -52.48 -0.41 1.47 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -31.17 345.85 -7.73 -38.90 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.68 Total: 2.04 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.27 Total: 10.10 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.39 Total: -57.92 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.10 Total: -13.08 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.48 Total: -1.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.17 -7.73 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016324314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.952 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds