Wall clock time and date at job start Tue Mar 31 2020 14:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35521 * 116.99808 * 2 1 4 4 N 1.32409 * 119.53007 * 359.73425 * 3 2 1 5 5 C 1.31652 * 121.80909 * 179.70859 * 4 3 2 6 6 C 1.39546 * 120.65114 * 0.55959 * 5 4 3 7 7 C 1.47617 * 120.49423 * 179.75126 * 6 5 4 8 8 O 1.21583 * 119.99941 * 179.97438 * 7 6 5 9 9 N 1.34781 * 120.00358 * 359.97206 * 7 6 5 10 10 C 1.46498 * 120.00417 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.88693 * 328.89124 * 10 9 7 12 12 C 1.55148 * 111.00838 * 205.00366 * 10 9 7 13 13 C 1.54322 * 102.94443 * 277.43577 * 12 10 9 14 14 N 1.47021 * 107.26839 * 337.79988 * 13 12 10 15 15 C 1.36937 * 125.64502 * 178.98738 * 14 13 12 16 16 H 1.08005 * 119.99777 * 179.97438 * 15 14 13 17 17 C 1.38806 * 120.00417 * 359.97438 * 15 14 13 18 18 N 1.31624 * 119.99954 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46900 * 90.00479 * 19 17 15 21 21 H 1.48501 * 109.47142 * 209.99997 * 19 17 15 22 22 H 1.48498 * 109.47213 * 330.00478 * 19 17 15 23 23 C 1.47424 * 108.70634 * 358.94543 * 14 13 12 24 24 C 1.40244 * 119.01351 * 359.72868 * 6 5 4 25 25 C 1.38080 * 118.34621 * 359.97438 * 24 6 5 26 26 Cl 1.73597 * 120.38443 * 180.02562 * 25 24 6 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47054 * 299.99618 * 1 2 3 29 29 H 1.09000 * 109.47187 * 59.99674 * 1 2 3 30 30 H 1.08003 * 119.67400 * 180.26816 * 5 4 3 31 31 H 0.97003 * 119.99257 * 0.02562 * 9 7 6 32 32 H 1.09008 * 110.71875 * 35.79659 * 12 10 9 33 33 H 1.08999 * 110.72196 * 159.06327 * 12 10 9 34 34 H 1.08999 * 109.88691 * 97.22037 * 13 12 10 35 35 H 1.09007 * 109.87809 * 218.39153 * 13 12 10 36 36 H 0.96997 * 119.99650 * 179.97438 * 18 17 15 37 37 H 1.08997 * 110.36563 * 265.28739 * 23 14 13 38 38 H 1.09001 * 110.36713 * 142.95846 * 23 14 13 39 39 H 1.08005 * 120.83081 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3140 2.3120 -0.0053 5 6 1.8645 3.5079 0.0001 6 6 3.2525 3.6522 0.0001 7 6 3.8661 4.9948 0.0007 8 8 5.0764 5.1100 0.0012 9 7 3.0846 6.0929 0.0007 10 6 3.6935 7.4254 0.0018 11 1 4.6477 7.4161 0.5287 12 6 2.7304 8.4765 0.6138 13 6 1.8104 8.8344 -0.5724 14 7 2.5334 8.4890 -1.8051 15 6 2.0534 8.6350 -3.0792 16 1 2.6654 8.3510 -3.9226 17 6 0.7804 9.1478 -3.2869 18 7 0.0347 9.4944 -2.2591 19 14 0.1260 9.3475 -5.0251 20 1 -0.5775 8.1055 -5.4349 21 1 -0.8213 10.4904 -5.0692 22 1 1.2563 9.6054 -5.9531 23 6 3.8609 7.9605 -1.4423 24 6 4.0558 2.5026 0.0000 25 6 3.4353 1.2691 0.0005 26 17 4.3784 -0.1883 0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 1.2357 4.3860 -0.0002 31 1 2.1190 6.0009 0.0006 32 1 2.1545 8.0422 1.4311 33 1 3.2817 9.3536 0.9528 34 1 0.8862 8.2599 -0.5113 35 1 1.5877 9.9014 -0.5599 36 1 -0.8547 9.8531 -2.4043 37 1 4.6059 8.7558 -1.4682 38 1 4.1444 7.1519 -2.1160 39 1 5.1331 2.5801 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016324314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:13 Heat of formation + Delta-G solvation = -30.708929 kcal Electronic energy + Delta-G solvation = -24938.542868 eV Core-core repulsion = 21100.715133 eV Total energy + Delta-G solvation = -3837.827736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.13063 -40.83997 -39.21824 -38.56108 -37.73217 -35.48537 -33.81537 -33.65154 -32.03511 -30.87184 -29.07136 -28.29355 -26.48300 -25.44174 -24.60332 -22.44168 -21.86249 -21.34353 -19.80238 -19.18432 -18.73041 -18.50267 -17.33306 -17.22395 -16.61768 -16.57205 -16.10951 -15.74138 -15.57637 -15.36556 -15.17045 -14.72337 -14.61046 -14.22679 -13.98298 -13.80571 -13.53520 -13.18901 -12.89083 -12.88493 -12.78371 -12.31897 -12.26710 -12.23535 -12.10261 -12.00539 -11.78180 -11.56492 -11.46722 -11.00355 -10.82898 -10.69496 -10.15089 -9.67752 -8.83062 -7.82991 -5.16419 -0.60787 -0.24785 0.84322 1.47505 1.48108 1.56541 1.63366 1.77090 2.08391 2.50524 2.51814 2.96051 3.35845 3.39773 3.59534 3.71040 3.71967 3.82669 3.88613 4.10589 4.29779 4.36769 4.41581 4.44540 4.67488 4.72984 4.73595 4.77049 4.92707 4.93876 5.01470 5.08802 5.47842 5.53929 5.71691 5.81070 5.86053 6.23039 6.34216 6.49064 7.11068 7.14992 7.80423 8.43896 9.26658 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003247 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.318633 B = 8622.098481 C = 9614.154879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.299 6.299 3 C 0.350 3.650 4 N -0.532 5.532 5 C 0.193 3.807 6 C -0.217 4.217 7 C 0.572 3.428 8 O -0.570 6.570 9 N -0.694 5.694 10 C 0.142 3.858 11 H 0.109 0.891 12 C -0.134 4.134 13 C 0.182 3.818 14 N -0.621 5.621 15 C -0.240 4.240 16 H 0.072 0.928 17 C -0.056 4.056 18 N -0.944 5.944 19 Si 0.970 3.030 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.276 1.276 23 C 0.121 3.879 24 C 0.027 3.973 25 C -0.125 4.125 26 Cl -0.030 7.030 27 H 0.129 0.871 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.188 0.812 31 H 0.408 0.592 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.023 0.977 35 H 0.008 0.992 36 H 0.247 0.753 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -17.716 9.341 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.204 6.204 3 C 0.170 3.830 4 N -0.256 5.256 5 C 0.035 3.965 6 C -0.223 4.223 7 C 0.360 3.640 8 O -0.451 6.451 9 N -0.344 5.344 10 C 0.036 3.964 11 H 0.127 0.873 12 C -0.172 4.172 13 C 0.057 3.943 14 N -0.348 5.348 15 C -0.369 4.369 16 H 0.090 0.910 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.799 3.201 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.201 1.201 23 C -0.005 4.005 24 C 0.001 3.999 25 C -0.155 4.155 26 Cl -0.001 7.001 27 H 0.147 0.853 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.204 0.796 31 H 0.245 0.755 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.042 0.958 35 H 0.026 0.974 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.681 -18.051 9.234 20.452 hybrid contribution -0.294 0.503 -1.219 1.351 sum 2.386 -17.548 8.015 19.439 Atomic orbital electron populations 1.23260 0.74685 1.05406 1.02992 1.86294 1.25200 1.22895 1.86013 1.19927 0.87988 0.86075 0.89005 1.67591 1.39117 0.98349 1.20583 1.23067 0.91624 0.94568 0.87227 1.20666 0.94972 0.93849 1.12836 1.17903 0.86243 0.84080 0.75791 1.90756 1.14829 1.87343 1.52178 1.45700 1.10521 1.05079 1.73053 1.22025 0.97606 0.81025 0.95750 0.87309 1.23097 0.97801 0.98352 0.97975 1.20992 0.92777 0.97107 0.83432 1.44706 1.13137 1.74657 1.02258 1.19326 0.98094 1.35623 0.83876 0.90973 1.25453 0.97212 1.01612 1.00687 1.70131 1.10198 1.49713 1.29240 0.85212 0.77846 0.76934 0.80121 1.21347 1.22023 1.20114 1.22083 0.87851 0.95640 0.94956 1.21538 1.02235 0.88010 0.88078 1.20723 0.89543 0.90328 1.14869 1.98382 1.71044 1.33634 1.97071 0.85293 0.91553 0.92045 0.79550 0.75546 0.88532 0.89047 0.95835 0.97355 0.94371 0.94923 0.95213 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.37 113.37 1.18 1.61 16 2 O -0.30 -6.06 9.93 -88.24 -0.88 -6.93 16 3 C 0.35 8.01 7.49 84.85 0.64 8.64 16 4 N -0.53 -12.34 9.18 -307.72 -2.82 -15.16 16 5 C 0.19 4.35 10.71 85.04 0.91 5.26 16 6 C -0.22 -5.38 5.89 -20.00 -0.12 -5.50 16 7 C 0.57 16.84 7.77 86.72 0.67 17.52 16 8 O -0.57 -19.95 16.05 -3.98 -0.06 -20.01 16 9 N -0.69 -20.07 5.14 -439.03 -2.26 -22.32 16 10 C 0.14 4.49 3.43 46.38 0.16 4.65 16 11 H 0.11 3.23 7.54 -2.39 -0.02 3.21 16 12 C -0.13 -4.15 6.55 31.78 0.21 -3.94 16 13 C 0.18 8.06 5.36 86.73 0.47 8.52 16 14 N -0.62 -30.11 3.39 -691.98 -2.35 -32.46 16 15 C -0.24 -13.10 10.28 84.03 0.86 -12.23 16 16 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 17 C -0.06 -3.08 5.49 84.86 0.47 -2.61 16 18 N -0.94 -53.79 10.31 21.65 0.22 -53.57 16 19 Si 0.97 44.82 29.55 68.60 2.03 46.84 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 C 0.12 4.86 6.93 86.86 0.60 5.47 16 24 C 0.03 0.64 9.50 22.72 0.22 0.85 16 25 C -0.12 -2.80 6.35 22.47 0.14 -2.66 16 26 Cl -0.03 -0.61 28.52 -2.72 -0.08 -0.68 16 27 H 0.13 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.91 8.10 -2.38 -0.02 0.89 16 29 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 30 H 0.19 3.57 6.41 -2.91 -0.02 3.55 16 31 H 0.41 10.84 6.72 -92.71 -0.62 10.22 16 32 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.02 1.14 7.38 -2.39 -0.02 1.12 16 35 H 0.01 0.42 7.51 -2.38 -0.02 0.40 16 36 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.17 3.71 7.73 -2.91 -0.02 3.69 16 Total: -1.00 -66.88 345.85 0.68 -66.20 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.47 Total: 12.51 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 6.40 Total: 25.58 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -7.21 Total: -123.51 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.94 Total: -26.94 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.68 kcal Total: -66.88 0.68 -66.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016324314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.493 kcal (2) G-P(sol) polarization free energy of solvation -66.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds