Wall clock time and date at job start Tue Mar 31 2020 14:16:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46498 * 109.47491 * 2 1
4 4 C 1.46497 * 120.00288 * 274.80903 * 3 2 1
5 5 C 1.50708 * 109.46915 * 263.67046 * 4 3 2
6 6 H 1.08000 * 119.99959 * 359.97438 * 5 4 3
7 7 C 1.37875 * 119.99829 * 179.97438 * 5 4 3
8 8 N 1.31521 * 120.00128 * 359.97438 * 7 5 4
9 9 Si 1.86798 * 120.00159 * 179.97438 * 7 5 4
10 10 H 1.48506 * 109.47020 * 89.99499 * 9 7 5
11 11 H 1.48497 * 109.47479 * 209.99802 * 9 7 5
12 12 H 1.48503 * 109.47037 * 330.00143 * 9 7 5
13 13 C 1.34778 * 119.99772 * 94.80685 * 3 2 1
14 14 O 1.21358 * 120.00383 * 354.61363 * 13 3 2
15 15 C 1.49355 * 119.99835 * 174.61696 * 13 3 2
16 16 O 1.21385 * 119.99998 * 0.03198 * 15 13 3
17 17 N 1.34771 * 119.99859 * 180.02562 * 15 13 3
18 18 C 1.39788 * 120.00132 * 185.10588 * 17 15 13
19 19 C 1.39265 * 120.49666 * 327.26117 * 18 17 15
20 20 C 1.38544 * 118.36977 * 179.72945 * 19 18 17
21 21 C 1.38228 * 119.27034 * 0.48924 * 20 19 18
22 22 C 1.50704 * 119.52784 * 179.77536 * 21 20 19
23 23 N 1.31903 * 120.94324 * 359.50116 * 21 20 19
24 24 C 1.31883 * 121.78561 * 0.24711 * 23 21 20
25 25 Cl 1.73599 * 119.68826 * 180.02562 * 24 23 21
26 26 H 1.09001 * 109.47112 * 300.00090 * 1 2 3
27 27 H 1.09002 * 109.46886 * 59.99488 * 1 2 3
28 28 H 1.08999 * 109.47432 * 179.97438 * 1 2 3
29 29 H 1.09006 * 109.47070 * 240.00379 * 2 1 3
30 30 H 1.08993 * 109.47111 * 120.00533 * 2 1 3
31 31 H 1.09003 * 109.46945 * 23.66593 * 4 3 2
32 32 H 1.08995 * 109.47882 * 143.66758 * 4 3 2
33 33 H 0.96999 * 119.99438 * 180.02562 * 8 7 5
34 34 H 0.97003 * 120.00254 * 5.11119 * 17 15 13
35 35 H 1.08001 * 120.81108 * 359.97438 * 19 18 17
36 36 H 1.08000 * 120.36223 * 180.26813 * 20 19 18
37 37 H 1.09005 * 109.46722 * 269.72914 * 22 21 20
38 38 H 1.08993 * 109.47083 * 29.72725 * 22 21 20
39 39 H 1.08998 * 109.47085 * 149.72857 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1624 2.1073 -1.2642
5 6 3.5899 2.0128 -1.7380
6 1 4.3172 1.4668 -1.1554
7 6 3.9674 2.6233 -2.9152
8 7 3.0815 3.2877 -3.6249
9 14 5.7369 2.5068 -3.5022
10 1 5.8948 1.3073 -4.3634
11 1 6.0815 3.7237 -4.2803
12 1 6.6412 2.3965 -2.3294
13 6 2.3353 1.9838 1.1631
14 8 2.1245 1.4191 2.2164
15 6 2.9458 3.3469 1.1558
16 8 3.1561 3.9121 0.1024
17 7 3.2631 3.9493 2.3189
18 6 3.7347 5.2653 2.3185
19 6 4.5041 5.7400 1.2593
20 6 4.9436 7.0532 1.3016
21 6 4.6160 7.8408 2.3893
22 6 5.0953 9.2686 2.4437
23 7 3.8854 7.3623 3.3777
24 6 3.4421 6.1202 3.3756
25 17 2.4839 5.5470 4.7049
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 1.8933 -0.5138 -0.8901
30 1 1.8933 -0.5139 0.8899
31 1 1.5015 1.6690 -2.0122
32 1 1.8978 3.1540 -1.1143
33 1 3.3471 3.7168 -4.4532
34 1 3.1644 3.4698 3.1563
35 1 4.7488 5.1013 0.4234
36 1 5.5387 7.4560 0.4953
37 1 6.0649 9.3076 2.9403
38 1 5.1902 9.6588 1.4304
39 1 4.3777 9.8718 2.9997
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001120780460.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:16:03
Heat of formation + Delta-G solvation = -25.783331 kcal
Electronic energy + Delta-G solvation = -25547.783610 eV
Core-core repulsion = 21710.169464 eV
Total energy + Delta-G solvation = -3837.614146 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.97728 -39.84375 -38.09002 -36.74574 -35.92883 -34.75260 -32.72540 -32.22676
-31.68242 -30.55443 -27.57586 -27.06595 -24.79696 -23.68034 -23.14059 -22.65717
-21.23216 -19.45086 -17.86570 -17.11163 -16.76913 -16.66308 -16.22676 -15.86102
-15.24067 -14.96295 -14.69416 -14.41880 -14.21582 -13.79582 -13.56501 -13.27033
-13.06565 -12.93975 -12.56703 -12.42622 -12.19471 -12.04724 -11.74148 -11.66337
-11.53825 -11.34389 -11.02000 -10.93140 -10.72045 -10.66355 -10.52252 -10.05220
-9.82923 -9.76071 -9.50249 -8.78528 -8.37965 -8.18052 -7.92451 -6.09943
-4.12469 0.79898 1.15840 1.74762 2.01534 2.68699 3.24125 3.31353
3.33974 3.52102 3.80506 3.93966 4.32257 4.37874 4.69905 4.79926
4.85068 5.12570 5.26031 5.26363 5.46724 5.47956 5.53153 5.64382
5.75780 5.77136 5.92093 6.11049 6.12617 6.22769 6.26203 6.51525
6.62079 6.66285 7.18768 7.30111 7.39911 7.67273 7.78391 7.99402
8.10681 8.19479 8.55538 8.87676 9.50066 10.98827
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.010783 B = 0.005028 C = 0.003626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2596.065055 B = 5567.892975 C = 7720.449823
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.111 3.889
3 N -0.557 5.557
4 C 0.228 3.772
5 C -0.515 4.515
6 H 0.054 0.946
7 C 0.070 3.930
8 N -0.889 5.889
9 Si 0.892 3.108
10 H -0.281 1.281
11 H -0.285 1.285
12 H -0.275 1.275
13 C 0.509 3.491
14 O -0.557 6.557
15 C 0.491 3.509
16 O -0.427 6.427
17 N -0.655 5.655
18 C 0.125 3.875
19 C -0.067 4.067
20 C -0.143 4.143
21 C 0.117 3.883
22 C -0.098 4.098
23 N -0.462 5.462
24 C 0.147 3.853
25 Cl -0.031 7.031
26 H 0.054 0.946
27 H 0.059 0.941
28 H 0.061 0.939
29 H 0.083 0.917
30 H 0.077 0.923
31 H 0.034 0.966
32 H 0.064 0.936
33 H 0.262 0.738
34 H 0.420 0.580
35 H 0.171 0.829
36 H 0.146 0.854
37 H 0.078 0.922
38 H 0.077 0.923
39 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.071 5.169 10.533 11.781
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.012 4.012
3 N -0.287 5.287
4 C 0.109 3.891
5 C -0.554 4.554
6 H 0.072 0.928
7 C -0.133 4.133
8 N -0.528 5.528
9 Si 0.720 3.280
10 H -0.207 1.207
11 H -0.211 1.211
12 H -0.200 1.200
13 C 0.291 3.709
14 O -0.438 6.438
15 C 0.272 3.728
16 O -0.294 6.294
17 N -0.304 5.304
18 C 0.025 3.975
19 C -0.094 4.094
20 C -0.164 4.164
21 C -0.022 4.022
22 C -0.156 4.156
23 N -0.173 5.173
24 C -0.021 4.021
25 Cl -0.003 7.003
26 H 0.073 0.927
27 H 0.078 0.922
28 H 0.080 0.920
29 H 0.102 0.898
30 H 0.095 0.905
31 H 0.052 0.948
32 H 0.082 0.918
33 H 0.072 0.928
34 H 0.259 0.741
35 H 0.188 0.812
36 H 0.164 0.836
37 H 0.096 0.904
38 H 0.096 0.904
39 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 0.735 5.788 10.834 12.305
hybrid contribution 1.024 -0.862 -0.635 1.481
sum 1.759 4.926 10.200 11.463
Atomic orbital electron populations
1.22106 0.96143 1.01660 1.02331 1.21453 0.94047 0.82607 1.03095
1.48302 1.58717 1.13533 1.08173 1.19949 0.97785 0.93343 0.78005
1.21191 0.94360 1.33278 1.06562 0.92768 1.24800 0.97218 0.94849
0.96417 1.69918 1.33760 1.34108 1.14990 0.86602 0.85096 0.77544
0.78759 1.20705 1.21108 1.20039 1.19585 0.80496 0.86163 0.84695
1.90667 1.55981 1.66234 1.30946 1.20553 0.80575 0.88127 0.83498
1.90972 1.46110 1.63562 1.28716 1.43226 1.64559 1.11321 1.11296
1.18277 0.97403 0.85789 0.96000 1.22063 0.92508 0.96594 0.98274
1.22028 1.01123 0.93970 0.99272 1.21099 0.94550 0.97224 0.89314
1.20677 1.01716 0.89905 1.03280 1.66734 1.10803 1.11962 1.27826
1.21351 0.99110 0.90385 0.91229 1.98397 1.69061 1.86744 1.46051
0.92654 0.92193 0.91973 0.89838 0.90485 0.94773 0.91820 0.92788
0.74135 0.81175 0.83634 0.90382 0.90368 0.90462
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.42 10.24 37.16 0.38 -2.04 16
2 C 0.11 1.89 6.11 -4.04 -0.02 1.87 16
3 N -0.56 -11.45 2.47 -175.61 -0.43 -11.88 16
4 C 0.23 5.44 4.78 -5.19 -0.02 5.41 16
5 C -0.52 -13.38 7.78 -34.44 -0.27 -13.64 16
6 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16
7 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16
8 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16
9 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16
10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
13 C 0.51 10.31 7.67 -11.63 -0.09 10.22 16
14 O -0.56 -11.28 16.04 5.49 0.09 -11.19 16
15 C 0.49 9.66 7.59 -11.63 -0.09 9.57 16
16 O -0.43 -9.51 9.45 5.47 0.05 -9.46 16
17 N -0.65 -10.89 5.07 -10.17 -0.05 -10.94 16
18 C 0.12 2.01 6.36 -83.54 -0.53 1.48 16
19 C -0.07 -1.06 8.83 -39.09 -0.35 -1.40 16
20 C -0.14 -1.88 9.73 -39.47 -0.38 -2.26 16
21 C 0.12 1.49 6.78 -82.56 -0.56 0.93 16
22 C -0.10 -0.87 10.17 36.01 0.37 -0.50 16
23 N -0.46 -6.78 10.24 -6.45 -0.07 -6.85 16
24 C 0.15 2.23 7.30 -17.22 -0.13 2.10 16
25 Cl -0.03 -0.42 28.09 -51.86 -1.46 -1.88 16
26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
29 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16
30 H 0.08 1.28 7.36 -51.93 -0.38 0.89 16
31 H 0.03 0.85 8.02 -51.93 -0.42 0.43 16
32 H 0.06 1.66 5.85 -51.93 -0.30 1.35 16
33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
34 H 0.42 6.38 7.50 -40.82 -0.31 6.07 16
35 H 0.17 3.05 6.13 -52.49 -0.32 2.73 16
36 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16
37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16
38 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16
39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
LS Contribution 350.23 15.07 5.28 5.28
Total: -1.00 -29.69 350.23 -7.32 -37.01
By element:
Atomic # 1 Polarization: 9.46 SS G_CDS: -4.65 Total: 4.81 kcal
Atomic # 6 Polarization: 15.29 SS G_CDS: -1.79 Total: 13.50 kcal
Atomic # 7 Polarization: -53.93 SS G_CDS: 0.18 Total: -53.74 kcal
Atomic # 8 Polarization: -20.79 SS G_CDS: 0.14 Total: -20.65 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal
Atomic # 17 Polarization: -0.42 SS G_CDS: -1.46 Total: -1.88 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -29.69 -7.32 -37.01 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001120780460.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.224 kcal
(2) G-P(sol) polarization free energy of solvation -29.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.783 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds