Wall clock time and date at job start Tue Mar 31 2020 14:16:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46498 * 109.47491 * 2 1
4 4 C 1.46497 * 120.00288 * 274.80903 * 3 2 1
5 5 C 1.50708 * 109.46915 * 263.67046 * 4 3 2
6 6 H 1.08000 * 119.99959 * 359.97438 * 5 4 3
7 7 C 1.37875 * 119.99829 * 179.97438 * 5 4 3
8 8 N 1.31521 * 120.00128 * 359.97438 * 7 5 4
9 9 Si 1.86798 * 120.00159 * 179.97438 * 7 5 4
10 10 H 1.48506 * 109.47020 * 89.99499 * 9 7 5
11 11 H 1.48497 * 109.47479 * 209.99802 * 9 7 5
12 12 H 1.48503 * 109.47037 * 330.00143 * 9 7 5
13 13 C 1.34778 * 119.99772 * 94.80685 * 3 2 1
14 14 O 1.21358 * 120.00383 * 354.61363 * 13 3 2
15 15 C 1.49355 * 119.99835 * 174.61696 * 13 3 2
16 16 O 1.21385 * 119.99998 * 0.03198 * 15 13 3
17 17 N 1.34771 * 119.99859 * 180.02562 * 15 13 3
18 18 C 1.39788 * 120.00132 * 185.10588 * 17 15 13
19 19 C 1.39265 * 120.49666 * 327.26117 * 18 17 15
20 20 C 1.38544 * 118.36977 * 179.72945 * 19 18 17
21 21 C 1.38228 * 119.27034 * 0.48924 * 20 19 18
22 22 C 1.50704 * 119.52784 * 179.77536 * 21 20 19
23 23 N 1.31903 * 120.94324 * 359.50116 * 21 20 19
24 24 C 1.31883 * 121.78561 * 0.24711 * 23 21 20
25 25 Cl 1.73599 * 119.68826 * 180.02562 * 24 23 21
26 26 H 1.09001 * 109.47112 * 300.00090 * 1 2 3
27 27 H 1.09002 * 109.46886 * 59.99488 * 1 2 3
28 28 H 1.08999 * 109.47432 * 179.97438 * 1 2 3
29 29 H 1.09006 * 109.47070 * 240.00379 * 2 1 3
30 30 H 1.08993 * 109.47111 * 120.00533 * 2 1 3
31 31 H 1.09003 * 109.46945 * 23.66593 * 4 3 2
32 32 H 1.08995 * 109.47882 * 143.66758 * 4 3 2
33 33 H 0.96999 * 119.99438 * 180.02562 * 8 7 5
34 34 H 0.97003 * 120.00254 * 5.11119 * 17 15 13
35 35 H 1.08001 * 120.81108 * 359.97438 * 19 18 17
36 36 H 1.08000 * 120.36223 * 180.26813 * 20 19 18
37 37 H 1.09005 * 109.46722 * 269.72914 * 22 21 20
38 38 H 1.08993 * 109.47083 * 29.72725 * 22 21 20
39 39 H 1.08998 * 109.47085 * 149.72857 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1624 2.1073 -1.2642
5 6 3.5899 2.0128 -1.7380
6 1 4.3172 1.4668 -1.1554
7 6 3.9674 2.6233 -2.9152
8 7 3.0815 3.2877 -3.6249
9 14 5.7369 2.5068 -3.5022
10 1 5.8948 1.3073 -4.3634
11 1 6.0815 3.7237 -4.2803
12 1 6.6412 2.3965 -2.3294
13 6 2.3353 1.9838 1.1631
14 8 2.1245 1.4191 2.2164
15 6 2.9458 3.3469 1.1558
16 8 3.1561 3.9121 0.1024
17 7 3.2631 3.9493 2.3189
18 6 3.7347 5.2653 2.3185
19 6 4.5041 5.7400 1.2593
20 6 4.9436 7.0532 1.3016
21 6 4.6160 7.8408 2.3893
22 6 5.0953 9.2686 2.4437
23 7 3.8854 7.3623 3.3777
24 6 3.4421 6.1202 3.3756
25 17 2.4839 5.5470 4.7049
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 1.8933 -0.5138 -0.8901
30 1 1.8933 -0.5139 0.8899
31 1 1.5015 1.6690 -2.0122
32 1 1.8978 3.1540 -1.1143
33 1 3.3471 3.7168 -4.4532
34 1 3.1644 3.4698 3.1563
35 1 4.7488 5.1013 0.4234
36 1 5.5387 7.4560 0.4953
37 1 6.0649 9.3076 2.9403
38 1 5.1902 9.6588 1.4304
39 1 4.3777 9.8718 2.9997
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001120780460.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:16:02
Heat of formation + Delta-G solvation = -44.105859 kcal
Electronic energy + Delta-G solvation = -25548.578134 eV
Core-core repulsion = 21710.169464 eV
Total energy + Delta-G solvation = -3838.408670 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-42.34231 -41.21152 -39.59792 -37.88662 -37.50428 -36.17792 -34.67308 -33.32866
-32.79529 -32.04335 -29.12184 -28.50874 -26.18368 -25.03387 -24.80996 -23.91680
-22.55717 -20.91580 -19.33800 -18.59212 -18.50399 -18.02471 -17.62832 -17.28042
-16.82136 -16.47605 -16.22812 -15.79399 -15.44613 -15.22786 -15.00861 -14.51544
-14.38660 -14.28232 -13.87989 -13.66574 -13.47181 -13.40494 -13.15209 -13.02853
-12.74640 -12.70440 -12.61967 -12.43976 -12.34084 -12.09010 -11.96061 -11.79921
-11.67520 -11.01349 -10.71772 -10.58527 -10.14350 -9.67333 -9.35658 -8.12858
-6.21447 -0.37614 -0.02533 0.48008 0.61417 1.25636 1.40597 1.42086
1.51097 2.12136 2.37907 2.49834 2.52663 3.21056 3.27369 3.30338
3.57349 3.79181 3.93272 4.14545 4.23014 4.33889 4.50865 4.64221
4.74947 4.80898 4.83841 4.91772 4.92734 5.01009 5.05004 5.19688
5.25769 5.37492 5.49543 5.55896 5.75626 5.91068 6.11234 6.27028
6.56452 6.65167 6.81308 6.99652 7.44549 8.95475
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.010783 B = 0.005028 C = 0.003626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2596.065055 B = 5567.892975 C = 7720.449823
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.104 3.896
3 N -0.563 5.563
4 C 0.247 3.753
5 C -0.517 4.517
6 H 0.046 0.954
7 C 0.025 3.975
8 N -0.921 5.921
9 Si 0.950 3.050
10 H -0.273 1.273
11 H -0.282 1.282
12 H -0.274 1.274
13 C 0.506 3.494
14 O -0.557 6.557
15 C 0.492 3.508
16 O -0.460 6.460
17 N -0.641 5.641
18 C 0.102 3.898
19 C -0.081 4.081
20 C -0.138 4.138
21 C 0.123 3.877
22 C -0.097 4.097
23 N -0.474 5.474
24 C 0.144 3.856
25 Cl -0.021 7.021
26 H 0.047 0.953
27 H 0.050 0.950
28 H 0.095 0.905
29 H 0.086 0.914
30 H 0.084 0.916
31 H 0.022 0.978
32 H 0.041 0.959
33 H 0.263 0.737
34 H 0.426 0.574
35 H 0.147 0.853
36 H 0.175 0.825
37 H 0.097 0.903
38 H 0.100 0.900
39 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.012 5.874 11.169 12.779
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.018 4.018
3 N -0.293 5.293
4 C 0.127 3.873
5 C -0.555 4.555
6 H 0.064 0.936
7 C -0.175 4.175
8 N -0.561 5.561
9 Si 0.776 3.224
10 H -0.199 1.199
11 H -0.208 1.208
12 H -0.199 1.199
13 C 0.288 3.712
14 O -0.438 6.438
15 C 0.273 3.727
16 O -0.329 6.329
17 N -0.290 5.290
18 C 0.003 3.997
19 C -0.109 4.109
20 C -0.158 4.158
21 C -0.015 4.015
22 C -0.154 4.154
23 N -0.186 5.186
24 C -0.023 4.023
25 Cl 0.007 6.993
26 H 0.067 0.933
27 H 0.069 0.931
28 H 0.113 0.887
29 H 0.105 0.895
30 H 0.103 0.897
31 H 0.040 0.960
32 H 0.059 0.941
33 H 0.072 0.928
34 H 0.266 0.734
35 H 0.164 0.836
36 H 0.192 0.808
37 H 0.116 0.884
38 H 0.119 0.881
39 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 1.673 6.478 11.522 13.323
hybrid contribution 0.736 -1.018 -0.733 1.454
sum 2.410 5.460 10.789 12.330
Atomic orbital electron populations
1.22035 0.94161 1.03576 1.01503 1.21710 0.95698 0.80791 1.03592
1.48296 1.59105 1.14705 1.07170 1.19471 0.96511 0.92387 0.78939
1.21337 0.95053 1.32737 1.06415 0.93580 1.25493 1.00743 0.94604
0.96656 1.70022 1.35496 1.35118 1.15434 0.85686 0.80746 0.77733
0.78224 1.19899 1.20751 1.19937 1.19732 0.80410 0.86471 0.84618
1.90654 1.56082 1.66389 1.30691 1.20515 0.80332 0.87912 0.83897
1.90966 1.47810 1.64256 1.29889 1.43023 1.63743 1.11720 1.10557
1.18364 0.98783 0.85555 0.96967 1.21988 0.93471 0.97753 0.97672
1.22346 1.00614 0.92678 1.00183 1.21824 0.92729 0.98822 0.88160
1.20836 1.02443 0.86988 1.05091 1.66885 1.11496 1.11515 1.28677
1.21409 0.99107 0.90527 0.91223 1.98394 1.68759 1.86717 1.45390
0.93336 0.93070 0.88673 0.89544 0.89714 0.95951 0.94091 0.92767
0.73441 0.83558 0.80765 0.88449 0.88108 0.90184
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.40 10.24 71.98 0.74 -3.66 16
2 C 0.10 3.49 6.11 86.38 0.53 4.02 16
3 N -0.56 -23.43 2.47 -827.85 -2.05 -25.48 16
4 C 0.25 12.12 4.78 85.64 0.41 12.53 16
5 C -0.52 -27.29 7.78 25.60 0.20 -27.09 16
6 H 0.05 2.46 7.81 -2.91 -0.02 2.44 16
7 C 0.02 1.32 5.46 84.65 0.46 1.78 16
8 N -0.92 -52.16 13.29 21.45 0.28 -51.88 16
9 Si 0.95 42.58 29.54 68.60 2.03 44.60 16
10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16
11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
13 C 0.51 20.75 7.67 87.24 0.67 21.42 16
14 O -0.56 -22.40 16.04 -3.27 -0.05 -22.45 16
15 C 0.49 19.89 7.59 87.24 0.66 20.55 16
16 O -0.46 -21.29 9.45 -3.35 -0.03 -21.32 16
17 N -0.64 -21.69 5.07 -304.43 -1.54 -23.24 16
18 C 0.10 3.30 6.36 38.32 0.24 3.55 16
19 C -0.08 -2.60 8.83 22.59 0.20 -2.40 16
20 C -0.14 -3.41 9.73 22.34 0.22 -3.19 16
21 C 0.12 2.88 6.78 42.55 0.29 3.17 16
22 C -0.10 -1.38 10.17 71.24 0.72 -0.65 16
23 N -0.47 -13.24 10.24 -174.32 -1.79 -15.03 16
24 C 0.14 4.29 7.30 84.88 0.62 4.91 16
25 Cl -0.02 -0.56 28.09 -2.72 -0.08 -0.63 16
26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16
28 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16
29 H 0.09 2.84 8.11 -2.38 -0.02 2.82 16
30 H 0.08 2.72 7.36 -2.39 -0.02 2.70 16
31 H 0.02 1.14 8.02 -2.39 -0.02 1.12 16
32 H 0.04 2.23 5.85 -2.39 -0.01 2.21 16
33 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16
34 H 0.43 13.02 7.50 -92.71 -0.70 12.33 16
35 H 0.15 5.46 6.13 -2.91 -0.02 5.44 16
36 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16
37 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16
38 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16
39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
Total: -1.00 -64.06 350.23 3.14 -60.92
By element:
Atomic # 1 Polarization: 19.15 SS G_CDS: 0.40 Total: 19.56 kcal
Atomic # 6 Polarization: 28.98 SS G_CDS: 5.96 Total: 34.94 kcal
Atomic # 7 Polarization: -110.53 SS G_CDS: -5.09 Total: -115.62 kcal
Atomic # 8 Polarization: -43.69 SS G_CDS: -0.08 Total: -43.77 kcal
Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal
Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.63 kcal
Total: -64.06 3.14 -60.92 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001120780460.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.816 kcal
(2) G-P(sol) polarization free energy of solvation -64.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.106 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds