Wall clock time and date at job start Tue Mar 31 2020 14:32:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34768 * 117.00040 * 2 1
4 4 O 1.21527 * 120.00314 * 0.02562 * 3 2 1
5 5 C 1.47243 * 119.99818 * 180.02562 * 3 2 1
6 6 C 1.39858 * 120.99079 * 6.11627 * 5 3 2
7 7 N 1.32155 * 119.01220 * 180.25686 * 6 5 3
8 8 C 1.32133 * 121.18256 * 359.74065 * 7 6 5
9 9 Cl 1.73600 * 118.88946 * 180.02562 * 8 7 6
10 10 N 1.31813 * 122.20973 * 0.02562 * 8 7 6
11 11 C 1.32939 * 120.84147 * 359.97438 * 10 8 7
12 12 N 1.37840 * 120.63651 * 179.97438 * 11 10 8
13 13 C 1.46503 * 120.00123 * 6.03516 * 12 11 10
14 14 H 1.09002 * 109.35371 * 324.82147 * 13 12 11
15 15 C 1.53005 * 109.39529 * 84.45238 * 13 12 11
16 16 C 1.53225 * 109.37824 * 183.51232 * 15 13 12
17 17 C 1.51270 * 108.69713 * 305.66086 * 16 15 13
18 18 C 1.37877 * 120.85486 * 231.23321 * 17 16 15
19 19 N 1.31517 * 119.99492 * 353.81627 * 18 17 16
20 20 Si 1.86795 * 120.00401 * 173.82250 * 18 17 16
21 21 H 1.48501 * 109.47119 * 354.62913 * 20 18 17
22 22 H 1.48498 * 109.47147 * 114.62993 * 20 18 17
23 23 H 1.48504 * 109.46914 * 234.63117 * 20 18 17
24 24 C 1.51270 * 118.29801 * 51.25204 * 17 16 15
25 25 C 1.52958 * 109.41013 * 205.00122 * 13 12 11
26 26 H 1.09006 * 109.46876 * 299.99831 * 1 2 3
27 27 H 1.09003 * 109.47221 * 59.99850 * 1 2 3
28 28 H 1.08997 * 109.47446 * 179.97438 * 1 2 3
29 29 H 1.07999 * 120.49290 * 359.97280 * 6 5 3
30 30 H 0.97002 * 119.99893 * 186.03080 * 12 11 10
31 31 H 1.09010 * 109.33599 * 63.63853 * 15 13 12
32 32 H 1.08996 * 109.65053 * 303.58355 * 15 13 12
33 33 H 1.09005 * 109.62886 * 185.85270 * 16 15 13
34 34 H 1.08998 * 109.62982 * 65.47026 * 16 15 13
35 35 H 0.97001 * 120.00137 * 179.97438 * 19 18 17
36 36 H 1.08998 * 109.62743 * 68.36754 * 24 17 16
37 37 H 1.09005 * 109.62389 * 188.93861 * 24 17 16
38 38 H 1.08996 * 109.48566 * 56.31441 * 25 13 12
39 39 H 1.09000 * 109.49636 * 296.27678 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0638 1.2008 0.0000
4 8 1.4020 2.2200 0.0005
5 6 3.5342 1.2778 -0.0006
6 6 4.3157 0.1250 -0.1289
7 7 5.6323 0.2388 -0.1193
8 6 6.2162 1.4177 0.0036
9 17 7.9503 1.4984 0.0081
10 7 5.5262 2.5345 0.1228
11 6 4.1969 2.5176 0.1236
12 7 3.4796 3.6879 0.2491
13 6 4.1755 4.9771 0.2504
14 1 5.1371 4.8680 0.7520
15 6 4.4073 5.4308 -1.1924
16 6 5.2119 6.7348 -1.1922
17 6 4.4962 7.7460 -0.3241
18 6 4.2154 9.0106 -0.7964
19 7 4.6757 9.3922 -1.9678
20 14 3.1814 10.1818 0.2275
21 1 2.6811 9.4750 1.4339
22 1 4.0112 11.3416 0.6418
23 1 2.0300 10.6599 -0.5793
24 6 4.0969 7.3344 1.0757
25 6 3.3286 6.0112 0.9940
26 1 -0.3633 0.5138 0.8901
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 3.8501 -0.8443 -0.2295
30 1 2.5140 3.6579 0.3365
31 1 3.4453 5.5972 -1.6774
32 1 4.9597 4.6629 -1.7339
33 1 5.2905 7.1167 -2.2101
34 1 6.2089 6.5498 -0.7926
35 1 4.4779 10.2817 -2.3003
36 1 4.9895 7.2023 1.6872
37 1 3.4591 8.1016 1.5149
38 1 3.1163 5.6512 2.0006
39 1 2.3920 6.1671 0.4586
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001157049566.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:32:24
Heat of formation + Delta-G solvation = -59.970964 kcal
Electronic energy + Delta-G solvation = -25415.719525 eV
Core-core repulsion = 21576.622892 eV
Total energy + Delta-G solvation = -3839.096633 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-42.53339 -41.07606 -39.46231 -38.06250 -37.69275 -36.44397 -34.50581 -33.89700
-32.28782 -31.52664 -29.19575 -28.44337 -26.31308 -25.08269 -23.77710 -23.16196
-22.75669 -21.25927 -19.62487 -19.32178 -18.73595 -18.09531 -17.83152 -17.53192
-16.70020 -16.49535 -16.36836 -16.24904 -15.22285 -15.08473 -14.85520 -14.79963
-14.39002 -14.25821 -14.10712 -13.55429 -13.35657 -13.20525 -12.86104 -12.83868
-12.81091 -12.62627 -12.57674 -12.37125 -12.00010 -11.87834 -11.84152 -11.49731
-11.22201 -11.11347 -10.90536 -10.60036 -10.50374 -10.49014 -9.41668 -8.16875
-6.12290 -0.86397 0.10773 0.20528 1.24079 1.39752 1.43096 1.51516
1.53204 1.91045 2.41600 2.50396 2.95686 3.11626 3.28218 3.53424
3.66325 3.93186 4.07308 4.13824 4.34309 4.39187 4.44376 4.65139
4.77023 4.82242 4.85605 4.93142 4.98791 5.11702 5.13943 5.21120
5.26012 5.39212 5.54440 5.59614 5.74464 5.78535 5.85932 6.29636
6.34646 6.58295 6.84531 6.93656 7.45913 8.94120
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.011973 B = 0.004098 C = 0.003222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2337.990138 B = 6831.716304 C = 8687.219338
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.344 6.344
3 C 0.539 3.461
4 O -0.537 6.537
5 C -0.326 4.326
6 C 0.275 3.725
7 N -0.564 5.564
8 C 0.428 3.572
9 Cl 0.038 6.962
10 N -0.586 5.586
11 C 0.491 3.509
12 N -0.667 5.667
13 C 0.163 3.837
14 H 0.079 0.921
15 C -0.097 4.097
16 C 0.014 3.986
17 C -0.499 4.499
18 C 0.020 3.980
19 N -0.933 5.933
20 Si 0.937 3.063
21 H -0.229 1.229
22 H -0.284 1.284
23 H -0.290 1.290
24 C -0.023 4.023
25 C -0.108 4.108
26 H 0.064 0.936
27 H 0.062 0.938
28 H 0.140 0.860
29 H 0.230 0.770
30 H 0.426 0.574
31 H 0.038 0.962
32 H 0.033 0.967
33 H 0.022 0.978
34 H -0.001 1.001
35 H 0.262 0.738
36 H 0.024 0.976
37 H 0.053 0.947
38 H 0.066 0.934
39 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.795 -22.188 6.121 23.735
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.259 6.259
3 C 0.385 3.615
4 O -0.429 6.429
5 C -0.339 4.339
6 C 0.111 3.889
7 N -0.287 5.287
8 C 0.134 3.866
9 Cl 0.067 6.933
10 N -0.314 5.314
11 C 0.243 3.757
12 N -0.301 5.301
13 C 0.059 3.941
14 H 0.097 0.903
15 C -0.136 4.136
16 C -0.024 4.024
17 C -0.518 4.518
18 C -0.179 4.179
19 N -0.573 5.573
20 Si 0.763 3.237
21 H -0.153 1.153
22 H -0.210 1.210
23 H -0.216 1.216
24 C -0.061 4.061
25 C -0.146 4.146
26 H 0.083 0.917
27 H 0.081 0.919
28 H 0.158 0.842
29 H 0.246 0.754
30 H 0.274 0.726
31 H 0.056 0.944
32 H 0.052 0.948
33 H 0.041 0.959
34 H 0.017 0.983
35 H 0.071 0.929
36 H 0.043 0.957
37 H 0.071 0.929
38 H 0.085 0.915
39 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -4.907 -21.449 6.026 22.813
hybrid contribution -1.305 1.287 -0.179 1.842
sum -6.213 -20.162 5.847 21.893
Atomic orbital electron populations
1.23657 0.73683 1.06214 1.02767 1.86504 1.25520 1.30103 1.83752
1.20284 0.87433 0.82088 0.71673 1.90618 1.66743 1.36576 1.48954
1.20106 0.92316 0.95368 1.26094 1.23985 0.86284 0.98734 0.79936
1.68138 1.12531 1.24863 1.23202 1.23139 0.90365 0.84897 0.88233
1.98449 1.01295 1.98152 1.95453 1.67511 1.06200 1.31906 1.25828
1.18475 0.86942 0.86614 0.83659 1.45917 1.11338 1.02916 1.69973
1.20967 0.96157 0.80438 0.96565 0.90267 1.21759 0.99211 0.97397
0.95275 1.19238 0.93864 0.92008 0.97265 1.20616 1.35602 0.97045
0.98543 1.25694 0.96950 0.99209 0.96001 1.70023 1.46420 1.19893
1.20919 0.85837 0.78898 0.78672 0.80297 1.15276 1.21036 1.21617
1.19949 0.96436 0.94335 0.95391 1.21758 0.98482 0.95767 0.98625
0.91724 0.91946 0.84206 0.75385 0.72598 0.94357 0.94777 0.95936
0.98285 0.92871 0.95727 0.92905 0.91548 0.92652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 10.57 113.37 1.20 1.53 16
2 O -0.34 -5.64 9.93 -56.79 -0.56 -6.20 16
3 C 0.54 12.48 7.88 70.19 0.55 13.04 16
4 O -0.54 -15.20 13.62 19.75 0.27 -14.93 16
5 C -0.33 -8.02 5.92 -19.81 -0.12 -8.14 16
6 C 0.28 5.39 10.89 85.04 0.93 6.32 16
7 N -0.56 -13.69 10.38 -189.77 -1.97 -15.66 16
8 C 0.43 12.22 8.17 180.78 1.48 13.70 16
9 Cl 0.04 0.98 29.26 -2.72 -0.08 0.90 16
10 N -0.59 -19.19 9.25 -187.57 -1.73 -20.92 16
11 C 0.49 15.35 7.49 133.79 1.00 16.35 16
12 N -0.67 -22.33 5.05 -323.43 -1.63 -23.96 16
13 C 0.16 6.26 2.41 44.98 0.11 6.37 16
14 H 0.08 3.22 7.47 -2.39 -0.02 3.20 16
15 C -0.10 -4.31 5.53 30.67 0.17 -4.14 16
16 C 0.01 0.75 5.94 30.10 0.18 0.92 16
17 C -0.50 -26.17 5.51 -16.17 -0.09 -26.26 16
18 C 0.02 1.07 5.46 84.65 0.46 1.53 16
19 N -0.93 -55.38 12.77 21.45 0.27 -55.11 16
20 Si 0.94 42.02 28.01 68.60 1.92 43.94 16
21 H -0.23 -9.22 5.46 99.48 0.54 -8.68 16
22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16
24 C -0.02 -1.02 5.63 30.11 0.17 -0.85 16
25 C -0.11 -4.11 5.41 30.66 0.17 -3.95 16
26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16
27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
28 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16
29 H 0.23 2.35 7.72 -2.91 -0.02 2.33 16
30 H 0.43 13.83 5.36 -92.71 -0.50 13.33 16
31 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16
32 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.02 1.29 7.13 -2.38 -0.02 1.27 16
34 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16
35 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16
36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16
37 H 0.05 2.25 4.28 -2.38 -0.01 2.24 16
38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
39 H 0.05 2.13 8.14 -2.39 -0.02 2.12 16
Total: -1.00 -64.97 338.27 3.13 -61.84
By element:
Atomic # 1 Polarization: 13.26 SS G_CDS: 0.45 Total: 13.71 kcal
Atomic # 6 Polarization: 10.20 SS G_CDS: 6.20 Total: 16.40 kcal
Atomic # 7 Polarization: -110.60 SS G_CDS: -5.06 Total: -115.66 kcal
Atomic # 8 Polarization: -20.84 SS G_CDS: -0.29 Total: -21.13 kcal
Atomic # 14 Polarization: 42.02 SS G_CDS: 1.92 Total: 43.94 kcal
Atomic # 17 Polarization: 0.98 SS G_CDS: -0.08 Total: 0.90 kcal
Total: -64.97 3.13 -61.84 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157049566.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.868 kcal
(2) G-P(sol) polarization free energy of solvation -64.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.105 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.971 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds