Wall clock time and date at job start Tue Mar 31 2020 14:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34943 * 120.00116 * 2 1 4 4 C 1.41297 * 119.99912 * 183.23459 * 3 2 1 5 5 O 1.21698 * 119.99864 * 354.14496 * 4 3 2 6 6 O 1.34957 * 120.00078 * 174.14443 * 4 3 2 7 7 C 1.42897 * 117.00283 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46887 * 90.00039 * 7 6 4 9 9 C 1.52999 * 109.47595 * 210.00130 * 7 6 4 10 10 N 1.36883 * 119.99967 * 180.02562 * 2 1 3 11 11 C 1.38856 * 120.00113 * 301.08282 * 10 2 1 12 12 C 1.39968 * 120.44390 * 353.43039 * 11 10 2 13 13 C 1.38872 * 118.59254 * 179.75918 * 12 11 10 14 14 Cl 1.73599 * 120.34177 * 180.26166 * 13 12 11 15 15 N 1.32173 * 119.31537 * 0.51784 * 13 12 11 16 16 C 1.33430 * 120.85148 * 359.74359 * 15 13 12 17 17 C 1.41570 * 119.23746 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99947 * 186.33096 * 17 16 15 19 19 C 1.40050 * 120.00122 * 6.34499 * 17 16 15 20 20 N 1.30689 * 120.00109 * 6.33212 * 19 17 16 21 21 Si 1.86807 * 119.99957 * 186.34089 * 19 17 16 22 22 H 1.48502 * 109.47220 * 94.98895 * 21 19 17 23 23 H 1.48495 * 109.46968 * 214.98920 * 21 19 17 24 24 H 1.48497 * 109.47098 * 334.98956 * 21 19 17 25 25 N 1.32537 * 120.44630 * 173.70921 * 11 10 2 26 26 H 1.09004 * 109.46826 * 89.85534 * 1 2 3 27 27 H 1.09003 * 109.47226 * 209.85472 * 1 2 3 28 28 H 1.08996 * 109.47245 * 329.86072 * 1 2 3 29 29 H 1.07993 * 119.99596 * 3.51354 * 3 2 1 30 30 H 1.08999 * 109.47107 * 330.00420 * 7 6 4 31 31 H 1.08998 * 109.46824 * 299.99878 * 8 7 6 32 32 H 1.08999 * 109.46935 * 60.00277 * 8 7 6 33 33 H 1.08998 * 109.47038 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47005 * 59.99696 * 9 7 6 35 35 H 1.08994 * 109.47627 * 180.02562 * 9 7 6 36 36 H 1.09004 * 109.46716 * 300.00103 * 9 7 6 37 37 H 0.97005 * 120.00233 * 121.07968 * 10 2 1 38 38 H 1.08000 * 120.70346 * 0.02562 * 12 11 10 39 39 H 0.96997 * 120.00081 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1817 1.1686 0.0000 4 6 3.5930 1.1695 -0.0690 5 8 4.2053 0.1189 -0.0210 6 8 4.2620 2.3355 -0.1883 7 6 5.6877 2.2620 -0.2519 8 6 6.1268 2.1288 -1.7115 9 6 6.2914 3.5333 0.3483 10 7 2.1914 -1.1854 -0.0005 11 6 2.0009 -2.0976 1.0289 12 6 1.2189 -1.7603 2.1397 13 6 1.0498 -2.7037 3.1446 14 17 0.0836 -2.3359 4.5392 15 7 1.6362 -3.8828 3.0307 16 6 2.3810 -4.1762 1.9632 17 6 2.9940 -5.4494 1.8766 18 1 3.6806 -5.6645 1.0712 19 6 2.7097 -6.4301 2.8352 20 7 1.7880 -6.2153 3.7364 21 14 3.6483 -8.0453 2.8256 22 1 4.7919 -7.9588 3.7690 23 1 2.7435 -9.1459 3.2442 24 1 4.1554 -8.3150 1.4563 25 7 2.5616 -3.2974 0.9755 26 1 -0.3633 0.0026 -1.0277 27 1 -0.3634 -0.8913 0.5116 28 1 -0.3633 0.8887 0.5160 29 1 1.6433 2.1030 0.0573 30 1 6.0323 1.3950 0.3117 31 1 5.6968 1.2231 -2.1391 32 1 5.7822 2.9958 -2.2751 33 1 7.2142 2.0722 -1.7601 34 1 5.9785 3.6282 1.3881 35 1 7.3788 3.4774 0.2993 36 1 5.9468 4.4003 -0.2154 37 1 2.8095 -1.3884 -0.7201 38 1 0.7534 -0.7884 2.2117 39 1 1.5914 -6.8944 4.4005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166728228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:15 Heat of formation + Delta-G solvation = -24.968417 kcal Electronic energy + Delta-G solvation = -24884.361456 eV Core-core repulsion = 21046.782647 eV Total energy + Delta-G solvation = -3837.578808 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.60528 -39.40405 -37.76476 -36.11091 -35.65608 -33.81893 -33.15505 -32.36244 -30.86030 -29.33255 -28.50220 -27.42201 -26.44234 -23.52019 -22.20451 -22.14624 -20.73621 -19.48574 -18.26734 -17.74767 -16.82330 -16.28614 -15.89866 -15.81309 -14.85761 -14.63991 -14.45086 -14.24050 -13.97399 -13.59589 -13.38114 -13.08947 -13.01357 -12.86423 -12.80073 -12.44592 -12.28964 -12.05569 -11.81590 -11.53058 -11.46574 -11.36089 -10.94053 -10.91011 -10.55441 -10.42697 -10.39569 -10.29351 -9.99569 -9.38299 -9.16981 -9.02695 -8.33594 -7.61305 -7.35876 -6.70634 -4.87329 1.08961 2.41854 2.82420 2.87817 3.02223 3.03195 3.06043 3.08165 3.25411 3.68499 3.84407 4.51722 4.71217 4.83749 4.84813 5.08670 5.31622 5.37582 5.38340 5.53564 5.56803 5.64623 5.67262 5.73506 5.79747 5.91090 5.95750 6.00800 6.03385 6.24829 6.29020 6.38350 6.67058 6.73956 6.88671 7.06252 7.64876 7.93189 8.07001 8.13299 8.37591 8.49333 8.91186 9.97227 10.12482 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.003549 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.368351 B = 7886.701390 C = 9112.265222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 C -0.285 4.285 4 C 0.498 3.502 5 O -0.508 6.508 6 O -0.354 6.354 7 C 0.078 3.922 8 C -0.168 4.168 9 C -0.148 4.148 10 N -0.657 5.657 11 C 0.453 3.547 12 C -0.400 4.400 13 C 0.270 3.730 14 Cl -0.077 7.077 15 N -0.523 5.523 16 C 0.433 3.567 17 C -0.389 4.389 18 H 0.098 0.902 19 C 0.066 3.934 20 N -0.701 5.701 21 Si 0.922 3.078 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.258 1.258 25 N -0.625 5.625 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.416 0.584 38 H 0.116 0.884 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 13.497 -6.097 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 C -0.309 4.309 4 C 0.347 3.653 5 O -0.398 6.398 6 O -0.272 6.272 7 C 0.022 3.978 8 C -0.226 4.226 9 C -0.205 4.205 10 N -0.288 5.288 11 C 0.208 3.792 12 C -0.433 4.433 13 C 0.088 3.912 14 Cl -0.049 7.049 15 N -0.244 5.244 16 C 0.198 3.802 17 C -0.424 4.424 18 H 0.116 0.884 19 C -0.162 4.162 20 N -0.322 5.322 21 Si 0.745 3.255 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.182 1.182 25 N -0.353 5.353 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.163 0.837 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.257 0.743 38 H 0.134 0.866 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.179 12.142 -5.751 13.487 hybrid contribution 0.203 0.241 -0.016 0.316 sum 1.383 12.384 -5.767 13.730 Atomic orbital electron populations 1.21473 0.90016 1.05246 1.03685 1.20120 0.93430 0.84888 0.85025 1.20941 0.90974 0.99133 1.19861 1.19830 0.89616 0.81736 0.74086 1.90922 1.70349 1.31931 1.46642 1.86255 1.21444 1.35191 1.84334 1.22216 0.78115 1.00083 0.97338 1.22219 1.01862 1.02681 0.95824 1.21876 1.00492 0.96579 1.01527 1.41372 1.46190 1.15357 1.25917 1.17953 0.88884 0.87369 0.85006 1.21011 1.19588 1.02916 0.99763 1.21418 0.91695 0.91622 0.86448 1.98301 1.69651 1.93530 1.43416 1.68544 1.13995 1.16058 1.25809 1.19455 0.87452 0.91842 0.81485 1.19415 1.20979 0.92802 1.09191 0.88367 1.26131 0.94894 1.00857 0.94357 1.70078 1.20700 1.32518 1.08886 0.86074 0.79771 0.79603 0.80082 1.19157 1.19875 1.18165 1.68156 1.32129 1.02298 1.32684 0.89410 0.89142 0.89632 0.83740 0.89963 0.92007 0.91875 0.91131 0.91787 0.90746 0.91658 0.74274 0.86568 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.22 36.01 0.33 -1.36 16 2 C 0.27 3.97 5.28 -81.51 -0.43 3.54 16 3 C -0.28 -3.93 9.59 -39.59 -0.38 -4.31 16 4 C 0.50 8.01 7.64 31.89 0.24 8.26 16 5 O -0.51 -9.82 13.30 -19.42 -0.26 -10.08 16 6 O -0.35 -5.02 9.75 -41.20 -0.40 -5.43 16 7 C 0.08 0.96 3.14 -26.73 -0.08 0.88 16 8 C -0.17 -1.78 9.53 37.16 0.35 -1.43 16 9 C -0.15 -1.37 9.56 37.16 0.36 -1.01 16 10 N -0.66 -12.32 3.72 -8.17 -0.03 -12.35 16 11 C 0.45 10.40 7.47 -154.73 -1.16 9.25 16 12 C -0.40 -8.91 8.04 -38.70 -0.31 -9.23 16 13 C 0.27 6.60 7.33 -17.17 -0.13 6.47 16 14 Cl -0.08 -1.60 29.15 -51.86 -1.51 -3.11 16 15 N -0.52 -14.43 7.94 -9.83 -0.08 -14.51 16 16 C 0.43 12.08 7.35 -158.35 -1.16 10.92 16 17 C -0.39 -10.44 9.37 -37.63 -0.35 -10.80 16 18 H 0.10 2.53 7.86 -52.48 -0.41 2.12 16 19 C 0.07 1.64 5.47 -17.36 -0.10 1.54 16 20 N -0.70 -18.14 11.51 55.55 0.64 -17.51 16 21 Si 0.92 18.17 29.56 -169.99 -5.03 13.14 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 N -0.62 -16.43 10.39 -11.84 -0.12 -16.56 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.26 6.31 -51.93 -0.33 0.93 16 28 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 29 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.08 1.18 7.11 -51.93 -0.37 0.81 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.42 7.89 7.72 -40.82 -0.32 7.57 16 38 H 0.12 2.25 6.13 -52.49 -0.32 1.93 16 39 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -31.12 352.17 -8.98 -40.09 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.68 Total: 8.27 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: -2.81 Total: 12.72 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.41 Total: -60.92 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.66 Total: -15.51 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -1.51 Total: -3.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.12 -8.98 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166728228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.126 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds