Wall clock time and date at job start Tue Mar 31 2020 14:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34943 * 120.00116 * 2 1 4 4 C 1.41297 * 119.99912 * 183.23459 * 3 2 1 5 5 O 1.21698 * 119.99864 * 354.14496 * 4 3 2 6 6 O 1.34957 * 120.00078 * 174.14443 * 4 3 2 7 7 C 1.42897 * 117.00283 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46887 * 90.00039 * 7 6 4 9 9 C 1.52999 * 109.47595 * 210.00130 * 7 6 4 10 10 N 1.36883 * 119.99967 * 180.02562 * 2 1 3 11 11 C 1.38856 * 120.00113 * 301.08282 * 10 2 1 12 12 C 1.39968 * 120.44390 * 353.43039 * 11 10 2 13 13 C 1.38872 * 118.59254 * 179.75918 * 12 11 10 14 14 Cl 1.73599 * 120.34177 * 180.26166 * 13 12 11 15 15 N 1.32173 * 119.31537 * 0.51784 * 13 12 11 16 16 C 1.33430 * 120.85148 * 359.74359 * 15 13 12 17 17 C 1.41570 * 119.23746 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99947 * 186.33096 * 17 16 15 19 19 C 1.40050 * 120.00122 * 6.34499 * 17 16 15 20 20 N 1.30689 * 120.00109 * 6.33212 * 19 17 16 21 21 Si 1.86807 * 119.99957 * 186.34089 * 19 17 16 22 22 H 1.48502 * 109.47220 * 94.98895 * 21 19 17 23 23 H 1.48495 * 109.46968 * 214.98920 * 21 19 17 24 24 H 1.48497 * 109.47098 * 334.98956 * 21 19 17 25 25 N 1.32537 * 120.44630 * 173.70921 * 11 10 2 26 26 H 1.09004 * 109.46826 * 89.85534 * 1 2 3 27 27 H 1.09003 * 109.47226 * 209.85472 * 1 2 3 28 28 H 1.08996 * 109.47245 * 329.86072 * 1 2 3 29 29 H 1.07993 * 119.99596 * 3.51354 * 3 2 1 30 30 H 1.08999 * 109.47107 * 330.00420 * 7 6 4 31 31 H 1.08998 * 109.46824 * 299.99878 * 8 7 6 32 32 H 1.08999 * 109.46935 * 60.00277 * 8 7 6 33 33 H 1.08998 * 109.47038 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47005 * 59.99696 * 9 7 6 35 35 H 1.08994 * 109.47627 * 180.02562 * 9 7 6 36 36 H 1.09004 * 109.46716 * 300.00103 * 9 7 6 37 37 H 0.97005 * 120.00233 * 121.07968 * 10 2 1 38 38 H 1.08000 * 120.70346 * 0.02562 * 12 11 10 39 39 H 0.96997 * 120.00081 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1817 1.1686 0.0000 4 6 3.5930 1.1695 -0.0690 5 8 4.2053 0.1189 -0.0210 6 8 4.2620 2.3355 -0.1883 7 6 5.6877 2.2620 -0.2519 8 6 6.1268 2.1288 -1.7115 9 6 6.2914 3.5333 0.3483 10 7 2.1914 -1.1854 -0.0005 11 6 2.0009 -2.0976 1.0289 12 6 1.2189 -1.7603 2.1397 13 6 1.0498 -2.7037 3.1446 14 17 0.0836 -2.3359 4.5392 15 7 1.6362 -3.8828 3.0307 16 6 2.3810 -4.1762 1.9632 17 6 2.9940 -5.4494 1.8766 18 1 3.6806 -5.6645 1.0712 19 6 2.7097 -6.4301 2.8352 20 7 1.7880 -6.2153 3.7364 21 14 3.6483 -8.0453 2.8256 22 1 4.7919 -7.9588 3.7690 23 1 2.7435 -9.1459 3.2442 24 1 4.1554 -8.3150 1.4563 25 7 2.5616 -3.2974 0.9755 26 1 -0.3633 0.0026 -1.0277 27 1 -0.3634 -0.8913 0.5116 28 1 -0.3633 0.8887 0.5160 29 1 1.6433 2.1030 0.0573 30 1 6.0323 1.3950 0.3117 31 1 5.6968 1.2231 -2.1391 32 1 5.7822 2.9958 -2.2751 33 1 7.2142 2.0722 -1.7601 34 1 5.9785 3.6282 1.3881 35 1 7.3788 3.4774 0.2993 36 1 5.9468 4.4003 -0.2154 37 1 2.8095 -1.3884 -0.7201 38 1 0.7534 -0.7884 2.2117 39 1 1.5914 -6.8944 4.4005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166728228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:15 Heat of formation + Delta-G solvation = -42.450590 kcal Electronic energy + Delta-G solvation = -24885.119540 eV Core-core repulsion = 21046.782647 eV Total energy + Delta-G solvation = -3838.336892 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88731 -41.08855 -39.14714 -37.52134 -37.35904 -35.61176 -34.28521 -33.86769 -32.60579 -30.95218 -29.62539 -28.31976 -28.22498 -24.85825 -24.04366 -23.66391 -21.82075 -20.87147 -19.93149 -19.05419 -18.32265 -18.02739 -17.35239 -17.04079 -16.55872 -16.04053 -15.86645 -15.55941 -15.39419 -15.07427 -14.84818 -14.67659 -14.11448 -14.01128 -13.83208 -13.35676 -13.22211 -13.17739 -13.16105 -13.02873 -12.98991 -12.79631 -12.73292 -12.10208 -12.05625 -11.96531 -11.88844 -11.54257 -11.35062 -11.05006 -10.99733 -10.54033 -10.07178 -9.53070 -8.97058 -8.54720 -6.84787 -0.14730 0.55610 1.01219 1.07410 1.40374 1.50551 1.56907 1.94247 1.99526 2.17160 2.27484 2.68161 3.72078 3.80736 3.84487 3.96181 4.09955 4.13852 4.24589 4.36850 4.47336 4.52065 4.65189 4.68306 4.73191 4.75736 4.81459 4.83384 4.86835 5.05143 5.08143 5.11488 5.20565 5.27100 5.39646 5.59730 5.99263 6.10985 6.32030 6.51896 6.63501 6.89423 7.08929 8.08764 8.29612 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.003549 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.368351 B = 7886.701390 C = 9112.265222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.248 3.752 3 C -0.268 4.268 4 C 0.491 3.509 5 O -0.549 6.549 6 O -0.350 6.350 7 C 0.067 3.933 8 C -0.163 4.163 9 C -0.141 4.141 10 N -0.656 5.656 11 C 0.449 3.551 12 C -0.389 4.389 13 C 0.248 3.752 14 Cl -0.048 7.048 15 N -0.558 5.558 16 C 0.408 3.592 17 C -0.425 4.425 18 H 0.094 0.906 19 C 0.027 3.973 20 N -0.737 5.737 21 Si 1.001 2.999 22 H -0.262 1.262 23 H -0.260 1.260 24 H -0.255 1.255 25 N -0.657 5.657 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.187 0.813 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.411 0.589 38 H 0.147 0.853 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 15.480 -6.449 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.148 3.852 3 C -0.291 4.291 4 C 0.342 3.658 5 O -0.442 6.442 6 O -0.267 6.267 7 C 0.012 3.988 8 C -0.221 4.221 9 C -0.198 4.198 10 N -0.286 5.286 11 C 0.203 3.797 12 C -0.421 4.421 13 C 0.068 3.932 14 Cl -0.020 7.020 15 N -0.280 5.280 16 C 0.172 3.828 17 C -0.460 4.460 18 H 0.112 0.888 19 C -0.198 4.198 20 N -0.358 5.358 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.178 1.178 25 N -0.386 5.386 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.204 0.796 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.251 0.749 38 H 0.165 0.835 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.811 14.240 -6.116 15.520 hybrid contribution 0.310 -0.103 0.039 0.329 sum 1.120 14.138 -6.077 15.429 Atomic orbital electron populations 1.21530 0.87133 1.05571 1.05476 1.20743 0.95075 0.83544 0.85866 1.21331 0.89897 1.00375 1.17496 1.20372 0.90655 0.81576 0.73203 1.90922 1.71387 1.33435 1.48501 1.86250 1.22558 1.34115 1.83788 1.22509 0.77190 1.00725 0.98419 1.22195 1.03049 1.02249 0.94567 1.21881 1.01563 0.95214 1.01120 1.41391 1.46436 1.15851 1.24923 1.18284 0.88097 0.87082 0.86189 1.21255 1.18621 1.03557 0.98625 1.21889 0.91848 0.91503 0.87911 1.98291 1.68653 1.93199 1.41894 1.68535 1.15453 1.17704 1.26299 1.19835 0.88057 0.92735 0.82183 1.19724 1.22059 0.93761 1.10461 0.88808 1.27055 0.95453 1.04067 0.93194 1.70138 1.21934 1.34157 1.09573 0.84919 0.78286 0.74724 0.80113 1.18699 1.18355 1.17828 1.68181 1.33727 1.03775 1.32903 0.86905 0.91610 0.86210 0.79586 0.92761 0.94256 0.90216 0.89191 0.92238 0.88710 0.90193 0.74858 0.83519 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.22 71.24 0.66 -2.14 16 2 C 0.25 6.87 5.28 41.01 0.22 7.09 16 3 C -0.27 -6.70 9.59 22.26 0.21 -6.49 16 4 C 0.49 15.38 7.64 68.57 0.52 15.90 16 5 O -0.55 -21.71 13.30 19.19 0.26 -21.46 16 6 O -0.35 -9.43 9.75 -58.74 -0.57 -10.00 16 7 C 0.07 1.59 3.14 30.60 0.10 1.69 16 8 C -0.16 -3.26 9.53 71.98 0.69 -2.58 16 9 C -0.14 -2.31 9.56 71.98 0.69 -1.62 16 10 N -0.66 -24.72 3.72 -179.76 -0.67 -25.39 16 11 C 0.45 21.05 7.47 133.28 1.00 22.05 16 12 C -0.39 -17.29 8.04 22.84 0.18 -17.10 16 13 C 0.25 12.29 7.33 84.79 0.62 12.91 16 14 Cl -0.05 -1.99 29.15 -2.72 -0.08 -2.07 16 15 N -0.56 -31.79 7.94 -185.00 -1.47 -33.26 16 16 C 0.41 23.83 7.35 135.16 0.99 24.82 16 17 C -0.43 -23.87 9.37 23.53 0.22 -23.65 16 18 H 0.09 5.10 7.86 -2.91 -0.02 5.08 16 19 C 0.03 1.38 5.47 85.30 0.47 1.85 16 20 N -0.74 -39.11 11.51 21.84 0.25 -38.85 16 21 Si 1.00 37.79 29.56 68.60 2.03 39.82 16 22 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 23 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 24 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 25 N -0.66 -36.05 10.39 -191.37 -1.99 -38.04 16 26 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.06 1.70 6.31 -2.39 -0.02 1.68 16 28 H 0.12 1.59 8.08 -2.39 -0.02 1.57 16 29 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.05 1.60 7.11 -2.39 -0.02 1.58 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.41 16.10 7.72 -92.70 -0.72 15.39 16 38 H 0.15 5.43 6.13 -2.91 -0.02 5.41 16 39 H 0.29 13.62 8.29 -92.71 -0.77 12.86 16 Total: -1.00 -72.02 352.17 4.70 -67.32 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.38 Total: 29.18 kcal Atomic # 6 Polarization: 26.18 SS G_CDS: 6.56 Total: 32.75 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -3.87 Total: -135.54 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.32 Total: -31.46 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.08 Total: -2.07 kcal Total: -72.02 4.70 -67.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166728228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.865 kcal (2) G-P(sol) polarization free energy of solvation -72.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds