Wall clock time and date at job start Tue Mar 31 2020 14:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34743 * 116.99738 * 2 1 4 4 O 1.21490 * 120.00451 * 359.97438 * 3 2 1 5 5 C 1.47592 * 120.00078 * 179.97438 * 3 2 1 6 6 N 1.33116 * 120.15645 * 5.19419 * 5 3 2 7 7 C 1.31774 * 119.98981 * 180.02562 * 6 5 3 8 8 Cl 1.73598 * 119.84277 * 180.02562 * 7 6 5 9 9 C 1.39000 * 120.31381 * 359.97438 * 7 6 5 10 10 N 1.31993 * 120.31497 * 359.77049 * 9 7 6 11 11 C 1.32847 * 120.00277 * 0.50474 * 10 9 7 12 12 N 1.38291 * 120.15041 * 179.74325 * 11 10 9 13 13 C 1.46848 * 110.99935 * 59.03635 * 12 11 10 14 14 C 1.53032 * 109.52388 * 174.15615 * 13 12 11 15 15 C 1.53123 * 109.30935 * 59.15839 * 14 13 12 16 16 C 1.53126 * 109.16141 * 302.40464 * 15 14 13 17 17 H 1.08997 * 109.49982 * 297.64036 * 16 15 14 18 18 C 1.50692 * 109.50626 * 177.55427 * 16 15 14 19 19 H 1.07996 * 120.00488 * 240.07992 * 18 16 15 20 20 C 1.37883 * 120.00040 * 60.35814 * 18 16 15 21 21 N 1.31519 * 119.99609 * 359.71953 * 20 18 16 22 22 Si 1.86796 * 120.00168 * 179.72354 * 20 18 16 23 23 H 1.48500 * 109.46939 * 89.99842 * 22 20 18 24 24 H 1.48503 * 109.47205 * 209.99629 * 22 20 18 25 25 H 1.48494 * 109.47289 * 329.99889 * 22 20 18 26 26 C 1.46845 * 111.00014 * 294.82173 * 12 11 10 27 27 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47475 * 300.00139 * 1 2 3 29 29 H 1.09009 * 109.47176 * 60.00425 * 1 2 3 30 30 H 1.07999 * 119.83979 * 180.02562 * 9 7 6 31 31 H 1.09003 * 109.46100 * 294.17389 * 13 12 11 32 32 H 1.09005 * 109.46233 * 54.14115 * 13 12 11 33 33 H 1.08999 * 109.50917 * 179.11910 * 14 13 12 34 34 H 1.08999 * 109.50595 * 299.24061 * 14 13 12 35 35 H 1.09005 * 109.55927 * 182.48273 * 15 14 13 36 36 H 1.08996 * 109.49708 * 62.28892 * 15 14 13 37 37 H 0.97000 * 119.99879 * 180.02562 * 21 20 18 38 38 H 1.09001 * 109.46275 * 65.83038 * 26 12 11 39 39 H 1.08993 * 109.45844 * 305.85379 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4020 2.2195 -0.0005 5 6 3.5375 1.2779 0.0006 6 7 4.2654 0.1682 -0.1031 7 6 5.5812 0.2411 -0.1018 8 17 6.5267 -1.2084 -0.2378 9 6 6.2155 1.4731 0.0071 10 7 5.5057 2.5815 0.1055 11 6 4.1786 2.5222 0.1109 12 7 3.4320 3.6812 0.2192 13 6 3.7321 4.6054 -0.8818 14 6 2.7877 5.8075 -0.8124 15 6 2.9654 6.5139 0.5346 16 6 2.6951 5.5165 1.6646 17 1 1.6630 5.1711 1.6058 18 6 2.9263 6.1876 2.9939 19 1 3.6731 5.8009 3.6715 20 6 2.1803 7.2919 3.3477 21 7 1.2709 7.7629 2.5226 22 14 2.4615 8.1190 4.9988 23 1 3.4969 9.1737 4.8541 24 1 1.1928 8.7319 5.4679 25 1 2.9184 7.1092 5.9870 26 6 3.6422 4.3227 1.5233 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 7.2943 1.5239 0.0070 31 1 4.7633 4.9483 -0.7972 32 1 3.5971 4.0920 -1.8339 33 1 3.0210 6.5009 -1.6204 34 1 1.7570 5.4668 -0.9107 35 1 2.2634 7.3447 0.6064 36 1 3.9853 6.8895 0.6166 37 1 0.7463 8.5400 2.7713 38 1 4.6738 4.6670 1.5966 39 1 3.4418 3.6041 2.3179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742693.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:19 Heat of formation + Delta-G solvation = -19.247059 kcal Electronic energy + Delta-G solvation = -25863.222826 eV Core-core repulsion = 22025.892114 eV Total energy + Delta-G solvation = -3837.330712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.71299 -39.86476 -38.45128 -37.02386 -36.23790 -34.83528 -33.77923 -32.16101 -30.18480 -29.87497 -27.88018 -25.79581 -25.02074 -24.81785 -22.26007 -21.66817 -21.50440 -19.06858 -18.44529 -17.92003 -17.37533 -16.62468 -16.40990 -16.11414 -15.69736 -15.36201 -14.73119 -14.45609 -14.12276 -13.64419 -13.39353 -13.12668 -12.79654 -12.75222 -12.52205 -12.10194 -12.07726 -12.03747 -11.84058 -11.69708 -11.35106 -10.96013 -10.80504 -10.73458 -10.65026 -10.59485 -10.16768 -9.91954 -9.85032 -9.54579 -9.29469 -9.09719 -8.75817 -8.34690 -8.10950 -5.99113 -4.05593 -0.01490 0.57140 1.31328 2.39200 2.49883 3.30307 3.34694 3.37244 3.39990 3.52490 3.82069 3.97724 4.23755 4.45045 4.81280 4.96630 5.15577 5.24908 5.30744 5.34292 5.54071 5.61592 5.71878 5.94736 6.09235 6.28358 6.35309 6.38248 6.58183 6.64844 6.68487 6.83753 7.06396 7.20747 7.29635 7.38136 7.59078 7.74285 7.87351 8.05263 8.13760 8.42514 8.97496 9.58584 11.06959 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.003850 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.486138 B = 7271.058868 C = 8011.155617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.347 6.347 3 C 0.514 3.486 4 O -0.429 6.429 5 C 0.080 3.920 6 N -0.380 5.380 7 C 0.101 3.899 8 Cl -0.010 7.010 9 C 0.121 3.879 10 N -0.452 5.452 11 C 0.332 3.668 12 N -0.472 5.472 13 C 0.072 3.928 14 C -0.115 4.115 15 C -0.111 4.111 16 C 0.058 3.942 17 H 0.041 0.959 18 C -0.516 4.516 19 H 0.053 0.947 20 C 0.065 3.935 21 N -0.886 5.886 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.076 3.924 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.184 0.816 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.033 0.967 37 H 0.260 0.740 38 H 0.039 0.961 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 -15.373 -8.163 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.263 6.263 3 C 0.352 3.648 4 O -0.309 6.309 5 C -0.061 4.061 6 N -0.100 5.100 7 C -0.070 4.070 8 Cl 0.018 6.982 9 C -0.044 4.044 10 N -0.170 5.170 11 C 0.103 3.897 12 N -0.197 5.197 13 C -0.054 4.054 14 C -0.153 4.153 15 C -0.149 4.149 16 C 0.040 3.960 17 H 0.059 0.941 18 C -0.555 4.555 19 H 0.072 0.928 20 C -0.137 4.137 21 N -0.524 5.524 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.048 4.048 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.201 0.799 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.368 -15.083 -8.216 17.995 hybrid contribution 0.971 0.381 0.948 1.410 sum 6.340 -14.701 -7.268 17.582 Atomic orbital electron populations 1.23299 0.76000 1.03539 1.02911 1.86637 1.23238 1.31980 1.84459 1.20043 0.86717 0.82333 0.75683 1.91056 1.64171 1.35044 1.40620 1.20874 0.92538 0.88213 1.04517 1.67760 1.05607 1.30491 1.06099 1.22803 0.90414 0.89873 1.03934 1.98423 1.67893 1.35890 1.95971 1.23917 1.02300 0.86033 0.92158 1.69170 1.07520 1.29711 1.10556 1.21134 0.86912 0.93707 0.87982 1.60282 1.48991 1.03925 1.06457 1.22095 0.98899 0.93266 0.91181 1.21679 0.99214 0.94624 0.99791 1.21678 1.00676 1.00884 0.91646 1.18677 0.94781 0.88658 0.93919 0.94102 1.21074 1.20255 1.12568 1.01580 0.92832 1.24909 0.94909 0.96946 0.96892 1.69892 1.22831 1.24140 1.35579 0.86612 0.77528 0.79652 0.84299 1.20718 1.21215 1.20001 1.22486 1.00142 0.97541 0.84659 0.88156 0.91517 0.91782 0.79883 0.93757 0.92498 0.92870 0.91460 0.88757 0.94848 0.92987 0.94253 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 16 2 O -0.35 -5.05 10.40 -40.61 -0.42 -5.47 16 3 C 0.51 8.65 7.93 34.55 0.27 8.93 16 4 O -0.43 -8.26 14.84 -19.26 -0.29 -8.55 16 5 C 0.08 1.31 6.77 -82.68 -0.56 0.75 16 6 N -0.38 -5.58 10.26 -6.66 -0.07 -5.65 16 7 C 0.10 1.23 7.28 -17.29 -0.13 1.10 16 8 Cl -0.01 -0.10 29.12 -51.86 -1.51 -1.61 16 9 C 0.12 1.41 11.01 -17.20 -0.19 1.22 16 10 N -0.45 -6.86 9.90 -11.95 -0.12 -6.97 16 11 C 0.33 5.68 5.28 -154.84 -0.82 4.86 16 12 N -0.47 -9.10 2.58 -172.92 -0.45 -9.54 16 13 C 0.07 1.29 5.23 -3.84 -0.02 1.27 16 14 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 15 C -0.11 -2.58 5.03 -26.60 -0.13 -2.71 16 16 C 0.06 1.46 2.26 -91.69 -0.21 1.25 16 17 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 18 C -0.52 -14.03 8.56 -34.44 -0.29 -14.32 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.07 1.78 5.31 -17.82 -0.09 1.69 16 21 N -0.89 -25.01 11.36 55.43 0.63 -24.38 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 C 0.08 1.64 4.52 -3.83 -0.02 1.63 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 30 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.04 0.79 7.99 -51.93 -0.41 0.37 16 32 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -30.12 344.68 -8.25 -38.37 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.92 Total: -2.23 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.28 Total: 4.72 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.00 Total: -46.54 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.71 Total: -14.02 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.51 Total: -1.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.12 -8.25 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742693.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.119 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds