Wall clock time and date at job start Tue Mar 31 2020 14:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34743 * 116.99738 * 2 1 4 4 O 1.21490 * 120.00451 * 359.97438 * 3 2 1 5 5 C 1.47592 * 120.00078 * 179.97438 * 3 2 1 6 6 N 1.33116 * 120.15645 * 5.19419 * 5 3 2 7 7 C 1.31774 * 119.98981 * 180.02562 * 6 5 3 8 8 Cl 1.73598 * 119.84277 * 180.02562 * 7 6 5 9 9 C 1.39000 * 120.31381 * 359.97438 * 7 6 5 10 10 N 1.31993 * 120.31497 * 359.77049 * 9 7 6 11 11 C 1.32847 * 120.00277 * 0.50474 * 10 9 7 12 12 N 1.38291 * 120.15041 * 179.74325 * 11 10 9 13 13 C 1.46848 * 110.99935 * 59.03635 * 12 11 10 14 14 C 1.53032 * 109.52388 * 174.15615 * 13 12 11 15 15 C 1.53123 * 109.30935 * 59.15839 * 14 13 12 16 16 C 1.53126 * 109.16141 * 302.40464 * 15 14 13 17 17 H 1.08997 * 109.49982 * 297.64036 * 16 15 14 18 18 C 1.50692 * 109.50626 * 177.55427 * 16 15 14 19 19 H 1.07996 * 120.00488 * 240.07992 * 18 16 15 20 20 C 1.37883 * 120.00040 * 60.35814 * 18 16 15 21 21 N 1.31519 * 119.99609 * 359.71953 * 20 18 16 22 22 Si 1.86796 * 120.00168 * 179.72354 * 20 18 16 23 23 H 1.48500 * 109.46939 * 89.99842 * 22 20 18 24 24 H 1.48503 * 109.47205 * 209.99629 * 22 20 18 25 25 H 1.48494 * 109.47289 * 329.99889 * 22 20 18 26 26 C 1.46845 * 111.00014 * 294.82173 * 12 11 10 27 27 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47475 * 300.00139 * 1 2 3 29 29 H 1.09009 * 109.47176 * 60.00425 * 1 2 3 30 30 H 1.07999 * 119.83979 * 180.02562 * 9 7 6 31 31 H 1.09003 * 109.46100 * 294.17389 * 13 12 11 32 32 H 1.09005 * 109.46233 * 54.14115 * 13 12 11 33 33 H 1.08999 * 109.50917 * 179.11910 * 14 13 12 34 34 H 1.08999 * 109.50595 * 299.24061 * 14 13 12 35 35 H 1.09005 * 109.55927 * 182.48273 * 15 14 13 36 36 H 1.08996 * 109.49708 * 62.28892 * 15 14 13 37 37 H 0.97000 * 119.99879 * 180.02562 * 21 20 18 38 38 H 1.09001 * 109.46275 * 65.83038 * 26 12 11 39 39 H 1.08993 * 109.45844 * 305.85379 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4020 2.2195 -0.0005 5 6 3.5375 1.2779 0.0006 6 7 4.2654 0.1682 -0.1031 7 6 5.5812 0.2411 -0.1018 8 17 6.5267 -1.2084 -0.2378 9 6 6.2155 1.4731 0.0071 10 7 5.5057 2.5815 0.1055 11 6 4.1786 2.5222 0.1109 12 7 3.4320 3.6812 0.2192 13 6 3.7321 4.6054 -0.8818 14 6 2.7877 5.8075 -0.8124 15 6 2.9654 6.5139 0.5346 16 6 2.6951 5.5165 1.6646 17 1 1.6630 5.1711 1.6058 18 6 2.9263 6.1876 2.9939 19 1 3.6731 5.8009 3.6715 20 6 2.1803 7.2919 3.3477 21 7 1.2709 7.7629 2.5226 22 14 2.4615 8.1190 4.9988 23 1 3.4969 9.1737 4.8541 24 1 1.1928 8.7319 5.4679 25 1 2.9184 7.1092 5.9870 26 6 3.6422 4.3227 1.5233 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 7.2943 1.5239 0.0070 31 1 4.7633 4.9483 -0.7972 32 1 3.5971 4.0920 -1.8339 33 1 3.0210 6.5009 -1.6204 34 1 1.7570 5.4668 -0.9107 35 1 2.2634 7.3447 0.6064 36 1 3.9853 6.8895 0.6166 37 1 0.7463 8.5400 2.7713 38 1 4.6738 4.6670 1.5966 39 1 3.4418 3.6041 2.3179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742693.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:18 Heat of formation + Delta-G solvation = -37.261087 kcal Electronic energy + Delta-G solvation = -25864.003973 eV Core-core repulsion = 22025.892114 eV Total energy + Delta-G solvation = -3838.111858 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.88428 -41.07347 -39.93970 -37.98442 -37.47335 -36.20999 -35.31798 -33.85032 -31.83606 -31.38078 -28.88874 -27.01003 -26.87769 -26.16918 -23.75203 -23.23905 -22.82408 -20.62435 -19.76957 -19.09433 -18.93807 -17.87852 -17.75593 -17.59470 -16.91682 -16.64467 -16.39017 -15.81402 -15.61924 -15.09971 -14.65395 -14.53728 -14.35370 -14.25561 -14.23165 -13.51860 -13.23228 -13.16298 -13.01781 -12.85051 -12.71205 -12.61717 -12.56669 -12.41787 -11.93110 -11.88366 -11.78906 -11.76492 -11.47762 -11.19790 -10.82767 -10.69180 -10.41462 -10.30625 -9.58262 -8.08426 -6.22979 -1.14019 -0.54358 0.34797 1.20038 1.38946 1.41913 1.42527 1.52610 2.18310 2.25519 2.45475 2.72064 2.98771 3.04677 3.18949 3.67273 3.91131 4.03031 4.14893 4.30172 4.33105 4.35987 4.43240 4.50652 4.58577 4.71849 4.79395 4.84451 4.99181 5.07685 5.19648 5.31258 5.44762 5.53273 5.62541 5.74444 5.98727 6.07305 6.13527 6.15631 6.37137 6.65872 6.87430 7.44698 8.96578 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.003850 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.486138 B = 7271.058868 C = 8011.155617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.348 6.348 3 C 0.515 3.485 4 O -0.466 6.466 5 C 0.065 3.935 6 N -0.389 5.389 7 C 0.110 3.890 8 Cl 0.022 6.978 9 C 0.140 3.860 10 N -0.465 5.465 11 C 0.313 3.687 12 N -0.483 5.483 13 C 0.077 3.923 14 C -0.106 4.106 15 C -0.102 4.102 16 C 0.059 3.941 17 H -0.003 1.003 18 C -0.537 4.537 19 H 0.051 0.949 20 C 0.018 3.982 21 N -0.913 5.913 22 Si 0.955 3.045 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.096 3.904 27 H 0.138 0.862 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.231 0.769 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.261 0.739 38 H 0.038 0.962 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.514 -16.964 -8.573 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.264 6.264 3 C 0.355 3.645 4 O -0.349 6.349 5 C -0.074 4.074 6 N -0.109 5.109 7 C -0.063 4.063 8 Cl 0.050 6.950 9 C -0.026 4.026 10 N -0.182 5.182 11 C 0.085 3.915 12 N -0.207 5.207 13 C -0.048 4.048 14 C -0.144 4.144 15 C -0.140 4.140 16 C 0.040 3.960 17 H 0.015 0.985 18 C -0.576 4.576 19 H 0.069 0.931 20 C -0.182 4.182 21 N -0.552 5.552 22 Si 0.781 3.219 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.029 4.029 27 H 0.156 0.844 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.247 0.753 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.598 -16.698 -8.637 20.277 hybrid contribution 0.371 0.664 1.042 1.290 sum 7.969 -16.034 -7.594 19.449 Atomic orbital electron populations 1.23620 0.74090 1.05935 1.02680 1.86627 1.25149 1.30829 1.83843 1.20270 0.87176 0.82390 0.74667 1.91038 1.65057 1.36190 1.42650 1.20696 0.92399 0.88452 1.05877 1.67791 1.06777 1.29774 1.06566 1.23179 0.89878 0.91429 1.01812 1.98446 1.66728 1.34200 1.95601 1.24633 1.03947 0.84690 0.89307 1.69124 1.06618 1.31383 1.11111 1.20884 0.87743 0.92782 0.90132 1.60019 1.50703 1.04637 1.05375 1.22052 0.98470 0.92574 0.91749 1.21561 0.98858 0.95665 0.98317 1.21458 0.99385 0.99736 0.93396 1.18539 0.93125 0.90322 0.94014 0.98487 1.21420 1.20401 1.13068 1.02703 0.93074 1.25688 0.94623 0.97533 1.00310 1.70038 1.23474 1.24447 1.37203 0.85606 0.77553 0.78683 0.80098 1.19837 1.20907 1.19506 1.22021 0.98728 0.95981 0.86174 0.84383 0.92295 0.91562 0.75303 0.93116 0.90467 0.90072 0.93184 0.91866 0.95023 0.92964 0.94356 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.57 113.37 1.20 1.83 16 2 O -0.35 -10.08 10.40 -56.53 -0.59 -10.67 16 3 C 0.52 17.66 7.93 70.29 0.56 18.22 16 4 O -0.47 -18.76 14.84 19.87 0.29 -18.47 16 5 C 0.07 2.11 6.77 41.95 0.28 2.39 16 6 N -0.39 -10.79 10.26 -174.98 -1.79 -12.58 16 7 C 0.11 2.35 7.28 84.88 0.62 2.97 16 8 Cl 0.02 0.35 29.12 -2.72 -0.08 0.27 16 9 C 0.14 2.78 11.01 84.85 0.93 3.72 16 10 N -0.46 -13.18 9.90 -191.72 -1.90 -15.08 16 11 C 0.31 10.53 5.28 133.48 0.70 11.24 16 12 N -0.48 -18.90 2.58 -701.00 -1.81 -20.71 16 13 C 0.08 2.74 5.23 86.32 0.45 3.19 16 14 C -0.11 -4.17 6.09 30.65 0.19 -3.99 16 15 C -0.10 -4.89 5.03 30.68 0.15 -4.74 16 16 C 0.06 3.08 2.26 -11.49 -0.03 3.05 16 17 H 0.00 -0.19 8.14 -2.39 -0.02 -0.20 16 18 C -0.54 -30.19 8.56 25.60 0.22 -29.97 16 19 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 20 C 0.02 0.99 5.31 84.66 0.45 1.44 16 21 N -0.91 -53.28 11.36 21.45 0.24 -53.04 16 22 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 C 0.10 4.30 4.52 86.33 0.39 4.69 16 27 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.23 2.30 8.06 -2.91 -0.02 2.27 16 31 H 0.05 1.73 7.99 -2.39 -0.02 1.71 16 32 H 0.08 2.43 8.10 -2.38 -0.02 2.41 16 33 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 3.43 6.17 -2.38 -0.01 3.42 16 36 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 38 H 0.04 1.68 8.08 -2.39 -0.02 1.67 16 39 H 0.04 2.05 8.10 -2.39 -0.02 2.03 16 Total: -1.00 -68.26 344.68 3.59 -64.67 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.08 Total: 5.61 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 6.12 Total: 14.04 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -5.26 Total: -101.41 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.29 Total: -29.13 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.27 kcal Total: -68.26 3.59 -64.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742693.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.407 kcal (2) G-P(sol) polarization free energy of solvation -68.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds