Wall clock time and date at job start Tue Mar 31 2020 14:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36826 * 119.99476 * 2 1 4 4 H 1.08004 * 119.99508 * 154.64338 * 3 2 1 5 5 C 1.38894 * 120.00587 * 334.92084 * 3 2 1 6 6 N 1.31498 * 119.99600 * 354.52431 * 5 3 2 7 7 Si 1.86799 * 120.00098 * 174.52700 * 5 3 2 8 8 H 1.48501 * 109.47114 * 89.99983 * 7 5 3 9 9 H 1.48496 * 109.46817 * 209.99965 * 7 5 3 10 10 H 1.48500 * 109.47110 * 330.00110 * 7 5 3 11 11 C 1.38394 * 119.99849 * 180.02562 * 2 1 3 12 12 N 1.32670 * 119.56161 * 85.29410 * 11 2 1 13 13 C 1.31544 * 121.79426 * 179.97438 * 12 11 2 14 14 C 1.39659 * 120.68012 * 359.96948 * 13 12 11 15 15 C 1.47543 * 120.47026 * 180.02562 * 14 13 12 16 16 O 1.21594 * 119.99993 * 35.40558 * 15 14 13 17 17 N 1.34775 * 119.99919 * 215.40482 * 15 14 13 18 18 C 1.47155 * 120.98358 * 5.99592 * 17 15 14 19 19 C 1.53719 * 108.16057 * 129.43340 * 18 17 15 20 20 O 1.42965 * 109.14598 * 52.53847 * 19 18 17 21 21 C 1.42956 * 114.16888 * 297.29142 * 20 19 18 22 22 C 1.47152 * 120.98359 * 186.28646 * 17 15 14 23 23 C 1.40336 * 119.05416 * 0.03120 * 14 13 12 24 24 C 1.37994 * 118.36815 * 359.74049 * 23 14 13 25 25 Cl 1.73603 * 120.39179 * 180.24899 * 24 23 14 26 26 H 1.09002 * 109.47197 * 94.90036 * 1 2 3 27 27 H 1.09003 * 109.46926 * 214.89778 * 1 2 3 28 28 H 1.08997 * 109.47209 * 334.89519 * 1 2 3 29 29 H 0.96998 * 119.99840 * 179.97438 * 6 5 3 30 30 H 1.08003 * 119.66517 * 179.97438 * 13 12 11 31 31 H 1.08992 * 109.68535 * 249.21326 * 18 17 15 32 32 H 1.08999 * 109.67646 * 9.76914 * 18 17 15 33 33 H 1.09000 * 109.65846 * 292.57694 * 19 18 17 34 34 H 1.08998 * 109.48174 * 172.39934 * 19 18 17 35 35 H 1.09003 * 109.51388 * 302.65437 * 21 20 19 36 36 H 1.09004 * 109.55431 * 182.52781 * 21 20 19 37 37 H 1.09006 * 109.68275 * 350.22487 * 22 17 15 38 38 H 1.08994 * 109.68836 * 110.78362 * 22 17 15 39 39 H 1.08004 * 120.81087 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1491 1.1850 0.0000 4 1 3.1511 1.2301 0.4006 5 6 1.5528 2.3312 -0.5098 6 7 0.3750 2.2571 -1.0899 7 14 2.4241 3.9778 -0.3716 8 1 3.2768 4.1887 -1.5689 9 1 1.4164 5.0650 -0.2837 10 1 3.2716 3.9885 0.8478 11 6 2.1570 -1.1985 -0.0005 12 7 2.4023 -1.8122 -1.1509 13 6 3.0562 -2.9524 -1.2025 14 6 3.5200 -3.5614 -0.0344 15 6 4.2535 -4.8400 -0.0978 16 8 5.0024 -5.0658 -1.0287 17 7 4.0934 -5.7577 0.8762 18 6 3.0973 -5.5651 1.9422 19 6 2.2481 -6.8426 2.0408 20 8 3.1140 -7.9719 2.1782 21 6 3.9798 -8.1849 1.0608 22 6 4.9138 -6.9789 0.9088 23 6 3.2782 -2.9400 1.2004 24 6 2.5926 -1.7425 1.2086 25 17 2.2704 -0.9251 2.7059 26 1 -0.3634 -0.0878 -1.0239 27 1 -0.3633 -0.8429 0.5880 28 1 -0.3633 0.9306 0.4360 29 1 -0.0416 3.0576 -1.4456 30 1 3.2365 -3.4224 -2.1581 31 1 3.6042 -5.3838 2.8899 32 1 2.4586 -4.7162 1.6986 33 1 1.6459 -6.9532 1.1390 34 1 1.5936 -6.7778 2.9100 35 1 3.3839 -8.3004 0.1553 36 1 4.5717 -9.0855 1.2244 37 1 5.4784 -7.0667 -0.0195 38 1 5.6005 -6.9375 1.7542 39 1 3.6244 -3.3858 2.1212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166801675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:34 Heat of formation + Delta-G solvation = 2.188065 kcal Electronic energy + Delta-G solvation = -25490.659113 eV Core-core repulsion = 21654.257898 eV Total energy + Delta-G solvation = -3836.401215 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88859 -39.52456 -38.29170 -36.06269 -35.67946 -35.06410 -32.67079 -31.61467 -31.40128 -29.63608 -28.03956 -26.13057 -24.88622 -24.55176 -23.18088 -22.57153 -21.30840 -19.84828 -17.75187 -17.54763 -16.97827 -16.42864 -16.17577 -16.08647 -15.86575 -15.41018 -14.91767 -14.75150 -14.57472 -14.03673 -13.90409 -13.53784 -13.30362 -12.87219 -12.75503 -12.48725 -12.14739 -12.11166 -11.75008 -11.53646 -11.16451 -11.05987 -11.01790 -10.71127 -10.59430 -10.50642 -10.26051 -10.21413 -10.15037 -9.42292 -9.18175 -8.86039 -8.68350 -8.32413 -7.18624 -5.94822 -3.50994 0.92807 1.35972 2.49692 2.57230 2.78961 3.31060 3.37119 3.38717 3.45780 4.00838 4.18916 4.30988 4.38687 4.60724 4.63756 4.69680 4.87336 4.88765 4.90242 5.01521 5.14379 5.25708 5.34049 5.36088 5.38092 5.48472 5.55254 5.62107 5.94033 6.08561 6.13571 6.53252 6.68029 6.71675 7.05572 7.22633 7.54221 7.65750 7.95422 8.16075 8.46588 8.98119 9.60884 9.99638 11.10647 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.003417 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.692725 B = 8192.452484 C = 8589.792446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.542 5.542 3 C -0.264 4.264 4 H 0.073 0.927 5 C 0.020 3.980 6 N -0.897 5.897 7 Si 0.914 3.086 8 H -0.283 1.283 9 H -0.287 1.287 10 H -0.276 1.276 11 C 0.453 3.547 12 N -0.484 5.484 13 C 0.170 3.830 14 C -0.218 4.218 15 C 0.580 3.420 16 O -0.533 6.533 17 N -0.616 5.616 18 C 0.061 3.939 19 C 0.047 3.953 20 O -0.380 6.380 21 C 0.048 3.952 22 C 0.078 3.922 23 C -0.046 4.046 24 C -0.104 4.104 25 Cl -0.043 7.043 26 H 0.027 0.973 27 H -0.004 1.004 28 H 0.080 0.920 29 H 0.259 0.741 30 H 0.159 0.841 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -17.806 7.973 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.261 5.261 3 C -0.392 4.392 4 H 0.091 0.909 5 C -0.181 4.181 6 N -0.540 5.540 7 Si 0.742 3.258 8 H -0.210 1.210 9 H -0.212 1.212 10 H -0.201 1.201 11 C 0.224 3.776 12 N -0.196 5.196 13 C 0.009 3.991 14 C -0.224 4.224 15 C 0.370 3.630 16 O -0.410 6.410 17 N -0.351 5.351 18 C -0.062 4.062 19 C -0.030 4.030 20 O -0.299 6.299 21 C -0.029 4.029 22 C -0.045 4.045 23 C -0.073 4.073 24 C -0.137 4.137 25 Cl -0.015 7.015 26 H 0.045 0.955 27 H 0.015 0.985 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.176 0.824 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.483 -17.360 6.914 19.008 hybrid contribution 0.766 0.769 0.602 1.241 sum 4.248 -16.591 7.516 18.703 Atomic orbital electron populations 1.20976 0.79380 0.98652 0.98475 1.41430 1.02750 0.98278 1.83685 1.19014 1.00093 0.84048 1.36070 0.90910 1.25128 0.97070 0.99033 0.96834 1.70001 1.15691 1.28412 1.39876 0.86122 0.78783 0.82628 0.78221 1.20991 1.21245 1.20090 1.18846 0.85344 0.87642 0.85802 1.68556 1.13521 1.07869 1.29695 1.22946 0.89584 0.89658 0.96921 1.20616 1.08336 0.98320 0.95145 1.18089 0.81022 0.82889 0.81039 1.90779 1.38348 1.78823 1.33037 1.47995 1.38608 1.21214 1.27258 1.22971 0.91908 1.00089 0.91205 1.23104 0.91921 0.84846 1.03167 1.87960 1.52653 1.47636 1.41617 1.22992 0.92504 0.97602 0.89852 1.22301 0.93968 0.83810 1.04388 1.21637 0.94867 0.93127 0.97622 1.22778 1.05455 0.95481 0.90020 1.98350 1.94279 1.78915 1.29920 0.95468 0.98502 0.90192 0.93109 0.82373 0.90056 0.87507 0.92303 0.87331 0.92471 0.87574 0.87844 0.90540 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.01 8.97 59.85 0.54 4.55 16 2 N -0.54 -13.36 2.40 -122.41 -0.29 -13.65 16 3 C -0.26 -7.05 9.59 -15.08 -0.14 -7.19 16 4 H 0.07 1.94 7.84 -52.48 -0.41 1.53 16 5 C 0.02 0.53 5.19 -17.45 -0.09 0.44 16 6 N -0.90 -24.93 10.49 55.49 0.58 -24.35 16 7 Si 0.91 21.23 29.56 -169.99 -5.02 16.20 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 C 0.45 9.87 6.02 -155.22 -0.93 8.93 16 12 N -0.48 -10.35 10.38 -12.10 -0.13 -10.48 16 13 C 0.17 2.98 10.77 -17.14 -0.18 2.80 16 14 C -0.22 -3.36 5.28 -104.78 -0.55 -3.91 16 15 C 0.58 8.37 7.40 -12.47 -0.09 8.28 16 16 O -0.53 -9.13 16.32 5.28 0.09 -9.04 16 17 N -0.62 -6.90 3.01 -173.24 -0.52 -7.42 16 18 C 0.06 0.55 4.99 -3.31 -0.02 0.54 16 19 C 0.05 0.38 7.00 37.53 0.26 0.64 16 20 O -0.38 -3.55 10.74 -35.23 -0.38 -3.93 16 21 C 0.05 0.38 6.98 37.31 0.26 0.64 16 22 C 0.08 0.72 6.65 -3.53 -0.02 0.69 16 23 C -0.05 -0.67 7.30 -38.88 -0.28 -0.95 16 24 C -0.10 -1.87 6.36 -39.18 -0.25 -2.12 16 25 Cl -0.04 -0.75 28.42 -51.86 -1.47 -2.22 16 26 H 0.03 0.69 7.88 -51.93 -0.41 0.28 16 27 H 0.00 -0.07 8.08 -51.93 -0.42 -0.49 16 28 H 0.08 2.03 6.57 -51.93 -0.34 1.68 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.16 2.50 8.01 -52.48 -0.42 2.08 16 31 H 0.08 0.64 7.97 -51.93 -0.41 0.23 16 32 H 0.11 1.04 4.76 -51.93 -0.25 0.79 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.02 7.06 -51.93 -0.37 0.65 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.14 1.65 6.12 -52.48 -0.32 1.33 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -31.25 338.45 -8.16 -39.41 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.60 Total: -2.94 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -1.51 Total: 13.32 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.36 Total: -55.90 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.29 Total: -12.97 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.47 Total: -2.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.25 -8.16 -39.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.598 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds