Wall clock time and date at job start Tue Mar 31 2020 14:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36826 * 119.99476 * 2 1 4 4 H 1.08004 * 119.99508 * 154.64338 * 3 2 1 5 5 C 1.38894 * 120.00587 * 334.92084 * 3 2 1 6 6 N 1.31498 * 119.99600 * 354.52431 * 5 3 2 7 7 Si 1.86799 * 120.00098 * 174.52700 * 5 3 2 8 8 H 1.48501 * 109.47114 * 89.99983 * 7 5 3 9 9 H 1.48496 * 109.46817 * 209.99965 * 7 5 3 10 10 H 1.48500 * 109.47110 * 330.00110 * 7 5 3 11 11 C 1.38394 * 119.99849 * 180.02562 * 2 1 3 12 12 N 1.32670 * 119.56161 * 85.29410 * 11 2 1 13 13 C 1.31544 * 121.79426 * 179.97438 * 12 11 2 14 14 C 1.39659 * 120.68012 * 359.96948 * 13 12 11 15 15 C 1.47543 * 120.47026 * 180.02562 * 14 13 12 16 16 O 1.21594 * 119.99993 * 35.40558 * 15 14 13 17 17 N 1.34775 * 119.99919 * 215.40482 * 15 14 13 18 18 C 1.47155 * 120.98358 * 5.99592 * 17 15 14 19 19 C 1.53719 * 108.16057 * 129.43340 * 18 17 15 20 20 O 1.42965 * 109.14598 * 52.53847 * 19 18 17 21 21 C 1.42956 * 114.16888 * 297.29142 * 20 19 18 22 22 C 1.47152 * 120.98359 * 186.28646 * 17 15 14 23 23 C 1.40336 * 119.05416 * 0.03120 * 14 13 12 24 24 C 1.37994 * 118.36815 * 359.74049 * 23 14 13 25 25 Cl 1.73603 * 120.39179 * 180.24899 * 24 23 14 26 26 H 1.09002 * 109.47197 * 94.90036 * 1 2 3 27 27 H 1.09003 * 109.46926 * 214.89778 * 1 2 3 28 28 H 1.08997 * 109.47209 * 334.89519 * 1 2 3 29 29 H 0.96998 * 119.99840 * 179.97438 * 6 5 3 30 30 H 1.08003 * 119.66517 * 179.97438 * 13 12 11 31 31 H 1.08992 * 109.68535 * 249.21326 * 18 17 15 32 32 H 1.08999 * 109.67646 * 9.76914 * 18 17 15 33 33 H 1.09000 * 109.65846 * 292.57694 * 19 18 17 34 34 H 1.08998 * 109.48174 * 172.39934 * 19 18 17 35 35 H 1.09003 * 109.51388 * 302.65437 * 21 20 19 36 36 H 1.09004 * 109.55431 * 182.52781 * 21 20 19 37 37 H 1.09006 * 109.68275 * 350.22487 * 22 17 15 38 38 H 1.08994 * 109.68836 * 110.78362 * 22 17 15 39 39 H 1.08004 * 120.81087 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1491 1.1850 0.0000 4 1 3.1511 1.2301 0.4006 5 6 1.5528 2.3312 -0.5098 6 7 0.3750 2.2571 -1.0899 7 14 2.4241 3.9778 -0.3716 8 1 3.2768 4.1887 -1.5689 9 1 1.4164 5.0650 -0.2837 10 1 3.2716 3.9885 0.8478 11 6 2.1570 -1.1985 -0.0005 12 7 2.4023 -1.8122 -1.1509 13 6 3.0562 -2.9524 -1.2025 14 6 3.5200 -3.5614 -0.0344 15 6 4.2535 -4.8400 -0.0978 16 8 5.0024 -5.0658 -1.0287 17 7 4.0934 -5.7577 0.8762 18 6 3.0973 -5.5651 1.9422 19 6 2.2481 -6.8426 2.0408 20 8 3.1140 -7.9719 2.1782 21 6 3.9798 -8.1849 1.0608 22 6 4.9138 -6.9789 0.9088 23 6 3.2782 -2.9400 1.2004 24 6 2.5926 -1.7425 1.2086 25 17 2.2704 -0.9251 2.7059 26 1 -0.3634 -0.0878 -1.0239 27 1 -0.3633 -0.8429 0.5880 28 1 -0.3633 0.9306 0.4360 29 1 -0.0416 3.0576 -1.4456 30 1 3.2365 -3.4224 -2.1581 31 1 3.6042 -5.3838 2.8899 32 1 2.4586 -4.7162 1.6986 33 1 1.6459 -6.9532 1.1390 34 1 1.5936 -6.7778 2.9100 35 1 3.3839 -8.3004 0.1553 36 1 4.5717 -9.0855 1.2244 37 1 5.4784 -7.0667 -0.0195 38 1 5.6005 -6.9375 1.7542 39 1 3.6244 -3.3858 2.1212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166801675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:33 Heat of formation + Delta-G solvation = -17.496688 kcal Electronic energy + Delta-G solvation = -25491.512708 eV Core-core repulsion = 21654.257898 eV Total energy + Delta-G solvation = -3837.254810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04557 -40.72627 -39.27943 -37.50574 -37.37599 -36.03501 -33.99971 -33.35546 -32.28115 -31.11662 -28.96156 -28.07977 -26.31237 -25.53390 -24.40973 -23.80006 -22.68801 -20.84155 -19.37329 -18.83045 -18.16872 -17.81706 -17.50557 -17.02573 -16.72403 -16.41313 -16.15244 -15.98971 -15.70134 -15.58196 -15.31247 -14.76998 -14.51534 -14.33052 -14.11372 -13.94015 -13.34542 -13.08182 -12.95387 -12.90698 -12.87294 -12.57413 -12.37044 -12.19564 -12.06470 -11.96963 -11.79793 -11.43711 -11.23284 -10.89890 -10.70613 -10.48488 -9.86560 -9.63566 -9.10407 -7.95665 -5.54188 -0.46703 -0.00200 1.10729 1.45993 1.47368 1.50838 1.56900 1.69587 2.37886 2.60161 2.85612 2.93413 3.23512 3.24478 3.58315 3.66278 3.76077 3.93443 4.00771 4.08708 4.09862 4.19022 4.27055 4.45633 4.53677 4.64527 4.71939 4.73266 4.77233 4.84130 4.90456 5.14517 5.26334 5.32408 5.53962 5.61774 6.05938 6.09154 6.24106 6.85483 6.91048 7.02253 7.69030 8.06909 9.08861 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.003417 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.692725 B = 8192.452484 C = 8589.792446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.556 5.556 3 C -0.268 4.268 4 H 0.068 0.932 5 C -0.030 4.030 6 N -0.927 5.927 7 Si 0.973 3.027 8 H -0.287 1.287 9 H -0.285 1.285 10 H -0.266 1.266 11 C 0.416 3.584 12 N -0.521 5.521 13 C 0.163 3.837 14 C -0.200 4.200 15 C 0.581 3.419 16 O -0.564 6.564 17 N -0.608 5.608 18 C 0.056 3.944 19 C 0.047 3.953 20 O -0.390 6.390 21 C 0.051 3.949 22 C 0.075 3.925 23 C -0.020 4.020 24 C -0.105 4.105 25 Cl -0.035 7.035 26 H -0.002 1.002 27 H 0.022 0.978 28 H 0.059 0.941 29 H 0.255 0.745 30 H 0.170 0.830 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.131 0.869 35 H 0.052 0.948 36 H 0.132 0.868 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -19.758 10.052 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.276 5.276 3 C -0.396 4.396 4 H 0.086 0.914 5 C -0.227 4.227 6 N -0.571 5.571 7 Si 0.800 3.200 8 H -0.214 1.214 9 H -0.211 1.211 10 H -0.191 1.191 11 C 0.189 3.811 12 N -0.234 5.234 13 C 0.002 3.998 14 C -0.206 4.206 15 C 0.370 3.630 16 O -0.444 6.444 17 N -0.341 5.341 18 C -0.066 4.066 19 C -0.030 4.030 20 O -0.308 6.308 21 C -0.027 4.027 22 C -0.047 4.047 23 C -0.046 4.046 24 C -0.138 4.138 25 Cl -0.006 7.006 26 H 0.016 0.984 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.187 0.813 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.149 0.851 35 H 0.070 0.930 36 H 0.149 0.851 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.758 -19.365 9.039 21.894 hybrid contribution 0.434 1.148 0.000 1.227 sum 5.192 -18.217 9.039 20.989 Atomic orbital electron populations 1.20662 0.79843 0.98468 0.96842 1.41374 1.02814 0.99016 1.84399 1.19175 0.99875 0.85258 1.35333 0.91418 1.25844 0.97815 1.02033 0.97042 1.70147 1.16917 1.28843 1.41149 0.85206 0.77731 0.78974 0.78123 1.21418 1.21077 1.19070 1.18918 0.87706 0.87566 0.86940 1.68286 1.15037 1.09605 1.30428 1.23096 0.89379 0.88900 0.98435 1.20743 1.06610 0.98543 0.94676 1.17862 0.80708 0.82950 0.81521 1.90777 1.39837 1.79312 1.34453 1.48084 1.38536 1.20932 1.26519 1.23185 0.91658 1.00571 0.91206 1.23194 0.91742 0.83946 1.04099 1.87961 1.52868 1.47926 1.42089 1.23079 0.92267 0.97856 0.89456 1.22504 0.94247 0.83247 1.04699 1.21919 0.92655 0.91280 0.98757 1.22552 1.05665 0.96362 0.89211 1.98350 1.94311 1.79045 1.28936 0.98385 0.96000 0.92233 0.93507 0.81270 0.87793 0.88128 0.92799 0.85086 0.92964 0.85070 0.88710 0.88828 0.80159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.11 8.97 127.77 1.15 10.26 16 2 N -0.56 -27.91 2.40 -541.19 -1.30 -29.20 16 3 C -0.27 -14.51 9.59 84.07 0.81 -13.71 16 4 H 0.07 3.65 7.84 -2.91 -0.02 3.63 16 5 C -0.03 -1.66 5.19 84.90 0.44 -1.22 16 6 N -0.93 -53.06 10.49 21.66 0.23 -52.83 16 7 Si 0.97 44.15 29.56 68.60 2.03 46.18 16 8 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 9 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 C 0.42 18.21 6.02 133.29 0.80 19.01 16 12 N -0.52 -22.56 10.38 -192.21 -1.99 -24.56 16 13 C 0.16 5.64 10.77 85.08 0.92 6.56 16 14 C -0.20 -5.79 5.28 -19.97 -0.11 -5.90 16 15 C 0.58 15.53 7.40 86.70 0.64 16.17 16 16 O -0.56 -18.59 16.32 -4.01 -0.07 -18.66 16 17 N -0.61 -11.77 3.01 -820.26 -2.47 -14.25 16 18 C 0.06 0.80 4.99 86.50 0.43 1.23 16 19 C 0.05 0.61 7.00 72.22 0.51 1.11 16 20 O -0.39 -5.90 10.74 -148.98 -1.60 -7.50 16 21 C 0.05 0.64 6.98 72.08 0.50 1.14 16 22 C 0.07 1.15 6.65 86.36 0.57 1.72 16 23 C -0.02 -0.52 7.30 22.72 0.17 -0.36 16 24 C -0.10 -3.64 6.36 22.53 0.14 -3.50 16 25 Cl -0.04 -1.15 28.42 -2.72 -0.08 -1.23 16 26 H 0.00 -0.13 7.88 -2.39 -0.02 -0.15 16 27 H 0.02 0.93 8.08 -2.39 -0.02 0.91 16 28 H 0.06 3.12 6.57 -2.39 -0.02 3.10 16 29 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.17 5.34 8.01 -2.91 -0.02 5.32 16 31 H 0.10 1.11 7.97 -2.39 -0.02 1.09 16 32 H 0.10 1.59 4.76 -2.39 -0.01 1.57 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.68 7.06 -2.38 -0.02 1.66 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 39 H 0.18 3.41 6.12 -2.91 -0.02 3.40 16 Total: -1.00 -69.06 338.45 2.81 -66.25 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.09 Total: 3.27 kcal Atomic # 6 Polarization: 25.55 SS G_CDS: 6.97 Total: 32.52 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.54 Total: -120.84 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -1.67 Total: -26.16 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -69.06 2.81 -66.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.757 kcal (2) G-P(sol) polarization free energy of solvation -69.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds