Wall clock time and date at job start Tue Mar 31 2020 14:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34228 * 116.99707 * 2 1 4 4 O 1.20826 * 120.00520 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99875 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.59408 * 43.00477 * 5 3 2 7 7 C 1.54937 * 110.66782 * 279.99836 * 5 3 2 8 8 C 1.54588 * 102.92187 * 203.98261 * 7 5 3 9 9 H 1.09005 * 110.39308 * 140.92171 * 8 7 5 10 10 N 1.46901 * 110.31208 * 263.03867 * 8 7 5 11 11 C 1.53991 * 105.14306 * 21.95826 * 8 7 5 12 12 N 1.47903 * 107.22430 * 1.12421 * 11 8 7 13 13 C 1.38401 * 111.00250 * 214.25383 * 12 11 8 14 14 N 1.32745 * 119.43865 * 66.14537 * 13 12 11 15 15 C 1.31461 * 121.74214 * 179.97438 * 14 13 12 16 16 C 1.40797 * 120.39303 * 359.97438 * 15 14 13 17 17 C 1.41188 * 120.56597 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00314 * 329.36892 * 17 16 15 19 19 C 1.39872 * 119.99726 * 149.37033 * 17 16 15 20 20 N 1.30895 * 119.99936 * 345.91147 * 19 17 16 21 21 Si 1.86803 * 119.99878 * 165.91177 * 19 17 16 22 22 H 1.48493 * 109.46955 * 84.98747 * 21 19 17 23 23 H 1.48505 * 109.46820 * 204.98830 * 21 19 17 24 24 H 1.48505 * 109.46822 * 324.98544 * 21 19 17 25 25 C 1.41285 * 118.86490 * 0.02562 * 16 15 14 26 26 C 1.36672 * 118.40107 * 359.74264 * 25 16 15 27 27 Cl 1.73598 * 120.26396 * 180.26273 * 26 25 16 28 28 H 1.08996 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46936 * 299.99656 * 1 2 3 30 30 H 1.08999 * 109.47465 * 60.00147 * 1 2 3 31 31 H 1.09006 * 110.71958 * 85.62516 * 7 5 3 32 32 H 1.08994 * 110.72347 * 322.34538 * 7 5 3 33 33 H 1.00897 * 111.00472 * 177.16650 * 10 8 7 34 34 H 1.00893 * 111.00541 * 301.12831 * 10 8 7 35 35 H 1.09001 * 109.92009 * 120.57457 * 11 8 7 36 36 H 1.08993 * 109.92276 * 241.67225 * 11 8 7 37 37 H 1.08006 * 119.80654 * 179.97438 * 15 14 13 38 38 H 0.97008 * 120.00345 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.79996 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9880 0.5500 -0.6969 7 6 4.1262 1.0519 1.4268 8 6 5.5012 1.7562 1.3727 9 1 5.6972 2.2791 2.3089 10 7 6.5645 0.7790 1.1035 11 6 5.3928 2.7617 0.2115 12 7 4.0243 2.6499 -0.3383 13 6 4.0211 2.8562 -1.7069 14 7 4.6300 1.9827 -2.4997 15 6 4.6545 2.1339 -3.8054 16 6 4.0263 3.2414 -4.4062 17 6 4.0498 3.4071 -5.8081 18 1 4.8884 3.0400 -6.3812 19 6 2.9871 4.0465 -6.4547 20 7 1.8590 4.2441 -5.8209 21 14 3.1777 4.6184 -8.2228 22 1 2.8739 3.4930 -9.1425 23 1 2.2389 5.7390 -8.4845 24 1 4.5719 5.0782 -8.4467 25 6 3.3719 4.1843 -3.5822 26 6 3.3718 3.9776 -2.2312 27 17 2.5765 5.1018 -1.1742 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 4.2455 -0.0119 1.6324 32 1 3.4820 1.5199 2.1712 33 1 7.4612 1.2340 1.0202 34 1 6.5866 0.0636 1.8145 35 1 5.5637 3.7735 0.5791 36 1 6.1237 2.5187 -0.5597 37 1 5.1595 1.4041 -4.4209 38 1 1.1220 4.6879 -6.2692 39 1 2.8796 5.0452 -4.0099 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166967387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:49 Heat of formation + Delta-G solvation = -43.117455 kcal Electronic energy + Delta-G solvation = -26019.437005 eV Core-core repulsion = 22181.071196 eV Total energy + Delta-G solvation = -3838.365810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36833 -39.11792 -37.69636 -35.87171 -35.26169 -34.48137 -33.28222 -30.83275 -30.51745 -29.13801 -27.90846 -27.01066 -25.06376 -23.21617 -21.98407 -21.22447 -20.21457 -19.73857 -17.59662 -17.34262 -16.79880 -16.25426 -15.85618 -15.62000 -15.50569 -15.03157 -14.78677 -14.21952 -13.69592 -13.59882 -13.36345 -12.86783 -12.76457 -12.46764 -12.19936 -11.96299 -11.84030 -11.78955 -11.52115 -11.39347 -11.25611 -11.12260 -10.97907 -10.85958 -10.58961 -10.42064 -10.35060 -9.83115 -9.76738 -9.46301 -8.67027 -8.61121 -8.18334 -7.90754 -7.49000 -6.97936 -4.65675 2.33138 2.71133 2.72749 2.96445 2.97181 3.00317 3.03135 3.43626 3.76233 4.34275 4.37020 4.62981 4.75614 4.87378 5.16090 5.31072 5.34246 5.38341 5.43216 5.57646 5.67756 5.76651 5.81932 5.90849 6.10268 6.20238 6.31976 6.51290 6.59127 6.75029 6.83882 6.95891 7.00185 7.07891 7.24631 7.43215 7.55537 7.69392 7.99764 8.23801 8.32649 8.49560 8.53252 9.30454 9.94026 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.004467 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.111596 B = 6266.891960 C = 6781.426116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.367 6.367 3 C 0.463 3.537 4 O -0.471 6.471 5 C 0.088 3.912 6 H 0.105 0.895 7 C -0.101 4.101 8 C 0.084 3.916 9 H 0.047 0.953 10 N -0.839 5.839 11 C 0.052 3.948 12 N -0.417 5.417 13 C 0.124 3.876 14 N -0.466 5.466 15 C -0.007 4.007 16 C 0.080 3.920 17 C -0.443 4.443 18 H 0.088 0.912 19 C 0.073 3.927 20 N -0.782 5.782 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.134 4.134 26 C 0.003 3.997 27 Cl -0.088 7.088 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.342 0.658 34 H 0.338 0.662 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.134 0.866 38 H 0.287 0.713 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -4.816 10.025 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.284 6.284 3 C 0.303 3.697 4 O -0.354 6.354 5 C -0.021 4.021 6 H 0.123 0.877 7 C -0.140 4.140 8 C -0.028 4.028 9 H 0.065 0.935 10 N -0.370 5.370 11 C -0.076 4.076 12 N -0.140 5.140 13 C -0.104 4.104 14 N -0.177 5.177 15 C -0.172 4.172 16 C 0.075 3.925 17 C -0.472 4.472 18 H 0.106 0.894 19 C -0.148 4.148 20 N -0.406 5.406 21 Si 0.739 3.261 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.160 4.160 26 C -0.027 4.027 27 Cl -0.060 7.060 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.688 -4.749 10.045 11.239 hybrid contribution 0.036 0.884 -0.706 1.132 sum 1.724 -3.865 9.339 10.253 Atomic orbital electron populations 1.23151 0.77110 1.02973 1.02379 1.86486 1.22802 1.34206 1.84923 1.23532 0.91673 0.81264 0.73206 1.90688 1.66394 1.35832 1.42478 1.22230 0.87236 0.94022 0.98647 0.87725 1.22449 0.95490 1.01283 0.94774 1.22123 0.91447 0.92384 0.96847 0.93545 1.58742 1.07815 1.16193 1.54261 1.22915 0.90440 0.98107 0.96093 1.62079 1.19865 1.22678 1.09395 1.18541 1.07515 0.96108 0.88282 1.67068 1.15258 1.28320 1.07029 1.22436 1.07494 0.98153 0.89109 1.18482 0.89929 0.89707 0.94412 1.19521 1.04321 1.31735 0.91654 0.89363 1.26021 0.94204 0.93274 1.01260 1.69805 1.02218 1.29540 1.38988 0.86187 0.79743 0.79143 0.80990 1.19107 1.19919 1.18222 1.21250 1.04332 1.01002 0.89421 1.21054 0.98317 0.92329 0.91005 1.98269 1.79144 1.61165 1.67405 0.88638 0.92310 0.92016 0.89738 0.90448 0.84485 0.84878 0.90554 0.91294 0.84866 0.90146 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.21 10.57 -39.25 -0.41 -6.63 16 3 C 0.46 8.95 7.10 36.01 0.26 9.21 16 4 O -0.47 -10.35 16.31 -18.75 -0.31 -10.66 16 5 C 0.09 1.60 2.75 -66.78 -0.18 1.41 16 6 H 0.11 2.08 7.23 -51.93 -0.38 1.71 16 7 C -0.10 -1.39 6.19 -24.87 -0.15 -1.54 16 8 C 0.08 1.07 4.12 -66.36 -0.27 0.80 16 9 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 10 N -0.84 -9.34 9.13 -3.52 -0.03 -9.37 16 11 C 0.05 0.86 6.38 -2.75 -0.02 0.85 16 12 N -0.42 -8.27 3.94 -162.79 -0.64 -8.91 16 13 C 0.12 2.85 5.21 -155.06 -0.81 2.05 16 14 N -0.47 -10.91 8.78 -11.75 -0.10 -11.02 16 15 C -0.01 -0.17 10.97 -16.74 -0.18 -0.36 16 16 C 0.08 2.02 5.52 -106.65 -0.59 1.43 16 17 C -0.44 -10.87 9.05 -37.85 -0.34 -11.21 16 18 H 0.09 2.02 7.88 -52.49 -0.41 1.61 16 19 C 0.07 1.71 5.19 -17.34 -0.09 1.62 16 20 N -0.78 -19.43 11.19 55.54 0.62 -18.81 16 21 Si 0.92 17.52 29.58 -169.99 -5.03 12.49 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 25 C -0.13 -3.42 8.48 -38.99 -0.33 -3.75 16 26 C 0.00 0.08 6.32 -39.57 -0.25 -0.17 16 27 Cl -0.09 -1.97 28.43 -51.86 -1.47 -3.44 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 30 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.08 1.00 8.00 -51.93 -0.42 0.59 16 32 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.34 3.35 9.06 -39.29 -0.36 2.99 16 34 H 0.34 2.96 8.99 -39.30 -0.35 2.61 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.26 7.18 -51.93 -0.37 0.89 16 37 H 0.13 2.92 8.06 -52.48 -0.42 2.50 16 38 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 39 H 0.13 3.48 6.59 -52.49 -0.35 3.13 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -29.31 347.12 -8.77 -38.08 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.72 Total: 11.13 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.90 Total: 1.91 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.15 Total: -48.11 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.72 Total: -17.28 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -1.47 Total: -3.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.31 -8.77 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166967387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.039 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds