Wall clock time and date at job start Tue Mar 31 2020 14:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34228 * 116.99707 * 2 1 4 4 O 1.20826 * 120.00520 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99875 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.59408 * 43.00477 * 5 3 2 7 7 C 1.54937 * 110.66782 * 279.99836 * 5 3 2 8 8 C 1.54588 * 102.92187 * 203.98261 * 7 5 3 9 9 H 1.09005 * 110.39308 * 140.92171 * 8 7 5 10 10 N 1.46901 * 110.31208 * 263.03867 * 8 7 5 11 11 C 1.53991 * 105.14306 * 21.95826 * 8 7 5 12 12 N 1.47903 * 107.22430 * 1.12421 * 11 8 7 13 13 C 1.38401 * 111.00250 * 214.25383 * 12 11 8 14 14 N 1.32745 * 119.43865 * 66.14537 * 13 12 11 15 15 C 1.31461 * 121.74214 * 179.97438 * 14 13 12 16 16 C 1.40797 * 120.39303 * 359.97438 * 15 14 13 17 17 C 1.41188 * 120.56597 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00314 * 329.36892 * 17 16 15 19 19 C 1.39872 * 119.99726 * 149.37033 * 17 16 15 20 20 N 1.30895 * 119.99936 * 345.91147 * 19 17 16 21 21 Si 1.86803 * 119.99878 * 165.91177 * 19 17 16 22 22 H 1.48493 * 109.46955 * 84.98747 * 21 19 17 23 23 H 1.48505 * 109.46820 * 204.98830 * 21 19 17 24 24 H 1.48505 * 109.46822 * 324.98544 * 21 19 17 25 25 C 1.41285 * 118.86490 * 0.02562 * 16 15 14 26 26 C 1.36672 * 118.40107 * 359.74264 * 25 16 15 27 27 Cl 1.73598 * 120.26396 * 180.26273 * 26 25 16 28 28 H 1.08996 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46936 * 299.99656 * 1 2 3 30 30 H 1.08999 * 109.47465 * 60.00147 * 1 2 3 31 31 H 1.09006 * 110.71958 * 85.62516 * 7 5 3 32 32 H 1.08994 * 110.72347 * 322.34538 * 7 5 3 33 33 H 1.00897 * 111.00472 * 177.16650 * 10 8 7 34 34 H 1.00893 * 111.00541 * 301.12831 * 10 8 7 35 35 H 1.09001 * 109.92009 * 120.57457 * 11 8 7 36 36 H 1.08993 * 109.92276 * 241.67225 * 11 8 7 37 37 H 1.08006 * 119.80654 * 179.97438 * 15 14 13 38 38 H 0.97008 * 120.00345 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.79996 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9880 0.5500 -0.6969 7 6 4.1262 1.0519 1.4268 8 6 5.5012 1.7562 1.3727 9 1 5.6972 2.2791 2.3089 10 7 6.5645 0.7790 1.1035 11 6 5.3928 2.7617 0.2115 12 7 4.0243 2.6499 -0.3383 13 6 4.0211 2.8562 -1.7069 14 7 4.6300 1.9827 -2.4997 15 6 4.6545 2.1339 -3.8054 16 6 4.0263 3.2414 -4.4062 17 6 4.0498 3.4071 -5.8081 18 1 4.8884 3.0400 -6.3812 19 6 2.9871 4.0465 -6.4547 20 7 1.8590 4.2441 -5.8209 21 14 3.1777 4.6184 -8.2228 22 1 2.8739 3.4930 -9.1425 23 1 2.2389 5.7390 -8.4845 24 1 4.5719 5.0782 -8.4467 25 6 3.3719 4.1843 -3.5822 26 6 3.3718 3.9776 -2.2312 27 17 2.5765 5.1018 -1.1742 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 4.2455 -0.0119 1.6324 32 1 3.4820 1.5199 2.1712 33 1 7.4612 1.2340 1.0202 34 1 6.5866 0.0636 1.8145 35 1 5.5637 3.7735 0.5791 36 1 6.1237 2.5187 -0.5597 37 1 5.1595 1.4041 -4.4209 38 1 1.1220 4.6879 -6.2692 39 1 2.8796 5.0452 -4.0099 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166967387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:48 Heat of formation + Delta-G solvation = -62.231906 kcal Electronic energy + Delta-G solvation = -26020.265870 eV Core-core repulsion = 22181.071196 eV Total energy + Delta-G solvation = -3839.194674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.84626 -40.71863 -39.21531 -37.31849 -37.10299 -36.14406 -34.67337 -32.50169 -32.16709 -30.74947 -29.17102 -28.22637 -26.74722 -24.72258 -23.75600 -22.94700 -21.37759 -21.21883 -19.42781 -18.78140 -18.35979 -17.67883 -17.33068 -17.21258 -16.70424 -16.54496 -15.99353 -15.95899 -15.20893 -15.14670 -14.64757 -14.41426 -14.19790 -14.01468 -13.71267 -13.64005 -13.37494 -13.09551 -13.09166 -12.86811 -12.71228 -12.58973 -12.47404 -12.21833 -12.11558 -12.00865 -11.76161 -11.59853 -11.32038 -11.20600 -10.39728 -10.06976 -9.60948 -9.51069 -9.29836 -8.76317 -6.54116 0.49958 0.81860 1.22699 1.39104 1.45788 1.54396 1.57047 1.68169 2.15737 2.57535 2.99239 3.39162 3.48960 3.63730 3.74587 3.97832 4.04022 4.27992 4.29425 4.31460 4.33769 4.54914 4.63213 4.64045 4.66628 4.85662 4.88831 4.94585 4.99657 5.01289 5.13864 5.17617 5.36544 5.68457 5.72474 5.76770 6.18196 6.32594 6.43983 6.65560 6.67869 6.72619 6.86664 7.42980 8.18430 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.004467 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.111596 B = 6266.891960 C = 6781.426116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.461 3.539 4 O -0.506 6.506 5 C 0.084 3.916 6 H 0.087 0.913 7 C -0.091 4.091 8 C 0.098 3.902 9 H 0.075 0.925 10 N -0.847 5.847 11 C 0.049 3.951 12 N -0.429 5.429 13 C 0.132 3.868 14 N -0.467 5.467 15 C -0.017 4.017 16 C 0.056 3.944 17 C -0.467 4.467 18 H 0.098 0.902 19 C 0.034 3.966 20 N -0.819 5.819 21 Si 0.991 3.009 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.253 1.253 25 C -0.150 4.150 26 C -0.014 4.014 27 Cl -0.075 7.075 28 H 0.136 0.864 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.351 0.649 34 H 0.355 0.645 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.150 0.850 38 H 0.294 0.706 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.256 -5.840 10.896 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C 0.303 3.697 4 O -0.392 6.392 5 C -0.025 4.025 6 H 0.105 0.895 7 C -0.129 4.129 8 C -0.014 4.014 9 H 0.093 0.907 10 N -0.382 5.382 11 C -0.078 4.078 12 N -0.152 5.152 13 C -0.097 4.097 14 N -0.178 5.178 15 C -0.181 4.181 16 C 0.051 3.949 17 C -0.496 4.496 18 H 0.116 0.884 19 C -0.183 4.183 20 N -0.443 5.443 21 Si 0.810 3.190 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.176 1.176 25 C -0.177 4.177 26 C -0.045 4.045 27 Cl -0.047 7.047 28 H 0.154 0.846 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.167 0.833 38 H 0.104 0.896 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.348 -5.812 10.944 12.612 hybrid contribution -0.214 1.144 -0.865 1.450 sum 2.134 -4.668 10.079 11.311 Atomic orbital electron populations 1.23479 0.75138 1.05564 1.01994 1.86473 1.24737 1.32899 1.84284 1.23842 0.92226 0.81397 0.72256 1.90669 1.67181 1.36986 1.44358 1.22321 0.86707 0.92409 1.01096 0.89531 1.22506 0.95646 1.03059 0.91732 1.21972 0.91545 0.91823 0.96074 0.90720 1.58637 1.07892 1.16381 1.55263 1.22996 0.88054 0.99843 0.96944 1.62082 1.21899 1.24016 1.07221 1.18838 1.05843 0.95137 0.89838 1.67171 1.15391 1.28403 1.06828 1.22720 1.07519 0.98198 0.89648 1.18772 0.90639 0.90252 0.95247 1.19840 1.05192 1.32939 0.91658 0.88364 1.26926 0.93286 0.92511 1.05567 1.69874 1.03158 1.30259 1.41057 0.85072 0.79843 0.78725 0.75329 1.18264 1.19475 1.17597 1.21191 1.05308 1.00983 0.90182 1.21273 0.98791 0.93363 0.91045 1.98255 1.78911 1.60680 1.66818 0.84570 0.91345 0.93802 0.87363 0.89641 0.83510 0.82959 0.90070 0.93207 0.83321 0.89565 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 2.00 16 2 O -0.37 -12.05 10.57 -51.39 -0.54 -12.59 16 3 C 0.46 17.64 7.10 71.24 0.51 18.15 16 4 O -0.51 -22.37 16.31 21.97 0.36 -22.01 16 5 C 0.08 2.97 2.75 44.46 0.12 3.10 16 6 H 0.09 3.41 7.23 -2.39 -0.02 3.39 16 7 C -0.09 -2.26 6.19 31.80 0.20 -2.06 16 8 C 0.10 2.23 4.12 45.79 0.19 2.42 16 9 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 10 N -0.85 -16.50 9.13 -165.04 -1.51 -18.00 16 11 C 0.05 1.57 6.38 86.44 0.55 2.12 16 12 N -0.43 -16.88 3.94 -668.95 -2.63 -19.51 16 13 C 0.13 6.19 5.21 133.32 0.69 6.88 16 14 N -0.47 -22.19 8.78 -191.09 -1.68 -23.87 16 15 C -0.02 -0.82 10.97 85.37 0.94 0.12 16 16 C 0.06 2.92 5.52 -21.18 -0.12 2.80 16 17 C -0.47 -23.37 9.05 23.39 0.21 -23.16 16 18 H 0.10 4.54 7.88 -2.91 -0.02 4.52 16 19 C 0.03 1.61 5.19 85.23 0.44 2.05 16 20 N -0.82 -41.72 11.19 21.82 0.24 -41.48 16 21 Si 0.99 35.75 29.58 68.60 2.03 37.78 16 22 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 23 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 24 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 25 C -0.15 -7.97 8.48 22.65 0.19 -7.78 16 26 C -0.01 -0.72 6.32 22.28 0.14 -0.58 16 27 Cl -0.08 -3.41 28.43 -2.72 -0.08 -3.49 16 28 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.07 1.62 8.13 -2.38 -0.02 1.60 16 30 H 0.04 1.28 8.13 -2.39 -0.02 1.26 16 31 H 0.11 2.19 8.00 -2.38 -0.02 2.17 16 32 H 0.08 2.01 8.05 -2.39 -0.02 2.00 16 33 H 0.35 5.97 9.06 -89.70 -0.81 5.16 16 34 H 0.36 4.97 8.99 -89.70 -0.81 4.17 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.05 1.79 7.18 -2.39 -0.02 1.78 16 37 H 0.15 6.60 8.06 -2.91 -0.02 6.57 16 38 H 0.29 13.59 8.30 -92.70 -0.77 12.82 16 39 H 0.12 6.41 6.59 -2.91 -0.02 6.39 16 Total: -1.00 -65.23 347.12 0.95 -64.27 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.50 Total: 32.83 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 5.26 Total: 6.06 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -5.57 Total: -102.86 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.18 Total: -34.60 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Atomic # 17 Polarization: -3.41 SS G_CDS: -0.08 Total: -3.49 kcal Total: -65.23 0.95 -64.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166967387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.042 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds