Wall clock time and date at job start Tue Mar 31 2020 14:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 117.00396 * 2 1 4 4 O 1.20827 * 119.99849 * 359.72674 * 3 2 1 5 5 C 1.50699 * 120.00390 * 179.97438 * 3 2 1 6 6 N 1.46500 * 110.01497 * 32.64104 * 5 3 2 7 7 C 1.38543 * 119.99792 * 59.49920 * 6 5 3 8 8 C 1.40041 * 120.45110 * 1.84149 * 7 6 5 9 9 C 1.38802 * 118.59187 * 179.77342 * 8 7 6 10 10 Cl 1.73598 * 120.33759 * 180.24178 * 9 8 7 11 11 N 1.32201 * 119.32415 * 0.50037 * 9 8 7 12 12 C 1.33421 * 120.86243 * 359.74349 * 11 9 8 13 13 C 1.41580 * 119.23836 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00041 * 173.64946 * 13 12 11 15 15 C 1.40051 * 119.99459 * 353.64840 * 13 12 11 16 16 N 1.30696 * 120.00716 * 6.28080 * 15 13 12 17 17 Si 1.86800 * 119.99652 * 186.27968 * 15 13 12 18 18 H 1.48497 * 109.47421 * 94.98621 * 17 15 13 19 19 H 1.48500 * 109.47416 * 214.98461 * 17 15 13 20 20 H 1.48502 * 109.47236 * 334.98376 * 17 15 13 21 21 N 1.32572 * 120.44503 * 182.11770 * 7 6 5 22 22 C 1.54269 * 110.03392 * 271.20067 * 5 3 2 23 23 C 1.54886 * 104.19709 * 217.10287 * 22 5 3 24 24 C 1.54888 * 102.74799 * 37.93915 * 23 22 5 25 25 C 1.53872 * 110.03525 * 154.03096 * 5 3 2 26 26 H 1.09001 * 109.46987 * 59.99944 * 1 2 3 27 27 H 1.08998 * 109.47258 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46664 * 300.00225 * 1 2 3 29 29 H 0.97002 * 120.00579 * 239.50560 * 6 5 3 30 30 H 1.08004 * 120.69861 * 0.02562 * 8 7 6 31 31 H 0.96993 * 120.00189 * 180.02562 * 16 15 13 32 32 H 1.09000 * 110.48590 * 335.78131 * 22 5 3 33 33 H 1.09004 * 110.48248 * 98.42118 * 22 5 3 34 34 H 1.09003 * 110.75672 * 279.62883 * 23 22 5 35 35 H 1.08993 * 110.75556 * 156.25689 * 23 22 5 36 36 H 1.09000 * 110.48993 * 203.37851 * 24 23 22 37 37 H 1.09002 * 110.48480 * 80.74006 * 24 23 22 38 38 H 1.08999 * 110.03611 * 238.57132 * 25 5 3 39 39 H 1.09003 * 110.03376 * 0.02562 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0050 5 6 3.5664 1.2748 0.0006 6 7 4.1281 0.1433 -0.7414 7 6 3.8026 -0.0402 -2.0755 8 6 2.9684 0.8714 -2.7345 9 6 2.6713 0.6527 -4.0726 10 17 1.6470 1.7573 -4.9352 11 7 3.1721 -0.4082 -4.6820 12 6 3.9604 -1.2640 -4.0291 13 6 4.4785 -2.3887 -4.7156 14 1 5.1980 -3.0323 -4.2317 15 6 4.0577 -2.6663 -6.0222 16 7 3.2831 -1.8231 -6.6525 17 14 4.6036 -4.2419 -6.8642 18 1 3.5622 -5.2852 -6.6854 19 1 4.8034 -3.9853 -8.3132 20 1 5.8793 -4.7078 -6.2636 21 7 4.2724 -1.0842 -2.7441 22 6 4.0952 1.2724 1.4498 23 6 5.3013 2.2436 1.4157 24 6 4.8165 3.3568 0.4541 25 6 4.0251 2.6001 -0.6325 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.7278 -0.4774 -0.2987 30 1 2.5681 1.7286 -2.2136 31 1 2.9915 -2.0157 -7.5573 32 1 3.3306 1.6376 2.1355 33 1 4.4190 0.2717 1.7360 34 1 6.1859 1.7470 1.0170 35 1 5.4988 2.6491 2.4079 36 1 5.6669 3.8775 0.0137 37 1 4.1685 4.0587 0.9790 38 1 4.6663 2.4015 -1.4913 39 1 3.1591 3.1865 -0.9398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167714239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:58 Heat of formation + Delta-G solvation = -41.256899 kcal Electronic energy + Delta-G solvation = -26197.373723 eV Core-core repulsion = 22359.088593 eV Total energy + Delta-G solvation = -3838.285130 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92655 -39.03776 -38.05395 -36.15771 -35.61097 -34.56868 -33.29140 -31.27552 -29.98115 -28.83897 -28.13591 -26.99282 -26.32560 -22.61796 -22.20431 -21.91154 -20.76336 -19.52591 -18.30843 -17.49707 -16.74721 -16.58564 -15.99772 -15.91169 -15.41575 -14.75124 -14.63681 -13.94544 -13.80907 -13.61533 -13.45988 -13.27202 -12.91936 -12.78096 -12.32976 -12.10887 -11.58575 -11.53098 -11.42280 -11.31125 -11.27507 -11.15422 -11.09318 -10.84157 -10.64954 -10.52623 -10.51716 -10.38881 -10.20146 -9.89234 -9.15021 -9.04799 -8.30167 -7.51996 -7.28158 -6.60319 -4.82154 2.29774 2.50872 2.77003 2.95832 3.01818 3.04898 3.09299 3.12927 3.62479 3.87162 4.34991 4.40511 4.60311 4.75782 5.07671 5.23561 5.29550 5.31486 5.35025 5.36984 5.55348 5.61859 5.67416 5.78907 5.82661 5.87869 6.00053 6.06730 6.19190 6.28015 6.33584 6.39149 6.58949 6.79057 6.87385 7.08159 7.57035 7.94168 8.07067 8.13327 8.47956 8.55907 9.00497 10.05658 10.20507 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.004382 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.090676 B = 6388.616889 C = 6892.542745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.340 6.340 3 C 0.465 3.535 4 O -0.511 6.511 5 C 0.204 3.796 6 N -0.710 5.710 7 C 0.460 3.540 8 C -0.410 4.410 9 C 0.271 3.729 10 Cl -0.081 7.081 11 N -0.525 5.525 12 C 0.434 3.566 13 C -0.393 4.393 14 H 0.097 0.903 15 C 0.065 3.935 16 N -0.701 5.701 17 Si 0.920 3.080 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.259 1.259 21 N -0.634 5.634 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.127 4.127 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.403 0.597 30 H 0.111 0.889 31 H 0.277 0.723 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 4.850 12.285 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.255 6.255 3 C 0.306 3.694 4 O -0.399 6.399 5 C 0.113 3.887 6 N -0.349 5.349 7 C 0.213 3.787 8 C -0.442 4.442 9 C 0.090 3.910 10 Cl -0.053 7.053 11 N -0.246 5.246 12 C 0.198 3.802 13 C -0.428 4.428 14 H 0.115 0.885 15 C -0.163 4.163 16 N -0.322 5.322 17 Si 0.743 3.257 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.182 1.182 21 N -0.363 5.363 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.159 4.159 25 C -0.166 4.166 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.240 0.760 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.007 4.557 11.458 12.331 hybrid contribution -0.545 0.057 -0.002 0.548 sum -0.553 4.614 11.456 12.363 Atomic orbital electron populations 1.23239 0.77010 1.03513 1.02142 1.86601 1.22776 1.32999 1.83164 1.24241 0.92302 0.81534 0.71281 1.90625 1.66705 1.36452 1.46113 1.20638 0.84787 0.89305 0.93991 1.44079 1.53234 1.29654 1.07887 1.17994 0.87677 0.88809 0.84230 1.21087 1.18726 1.08266 0.96150 1.21423 0.90884 0.91056 0.87658 1.98299 1.66733 1.61044 1.79262 1.68607 1.15668 1.03392 1.36973 1.19479 0.86486 0.90930 0.83257 1.19361 1.20761 1.06020 0.96670 0.88524 1.26131 0.94315 0.98409 0.97410 1.70148 1.19938 1.31650 1.10449 0.86111 0.80174 0.80896 0.78523 1.19308 1.19955 1.18222 1.68219 1.34527 1.22605 1.10958 1.22588 0.98846 1.01751 0.92378 1.22511 0.97294 0.96119 0.99923 1.22374 0.99666 0.97546 0.96356 1.22744 1.01678 0.93082 0.99064 0.91799 0.88368 0.92351 0.75956 0.87067 0.91139 0.89925 0.89497 0.90604 0.90846 0.90984 0.91237 0.89235 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 101.05 1.07 1.55 16 2 O -0.34 -5.87 10.12 -39.24 -0.40 -6.27 16 3 C 0.46 7.92 4.31 36.01 0.16 8.08 16 4 O -0.51 -9.34 15.20 -18.75 -0.29 -9.63 16 5 C 0.20 3.03 0.90 -131.85 -0.12 2.91 16 6 N -0.71 -12.30 4.96 -47.60 -0.24 -12.54 16 7 C 0.46 10.30 6.93 -154.98 -1.07 9.22 16 8 C -0.41 -9.42 7.65 -38.70 -0.30 -9.71 16 9 C 0.27 6.81 7.33 -17.18 -0.13 6.69 16 10 Cl -0.08 -1.79 29.15 -51.86 -1.51 -3.30 16 11 N -0.53 -14.59 7.89 -9.84 -0.08 -14.67 16 12 C 0.43 12.03 7.36 -158.34 -1.17 10.87 16 13 C -0.39 -10.45 9.37 -37.63 -0.35 -10.81 16 14 H 0.10 2.45 7.85 -52.49 -0.41 2.03 16 15 C 0.07 1.62 5.49 -17.36 -0.10 1.53 16 16 N -0.70 -18.30 11.45 55.55 0.64 -17.67 16 17 Si 0.92 18.13 29.56 -169.99 -5.03 13.11 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 21 N -0.63 -16.17 10.39 -11.89 -0.12 -16.29 16 22 C -0.12 -1.27 6.00 -25.07 -0.15 -1.42 16 23 C -0.12 -1.13 6.91 -24.74 -0.17 -1.30 16 24 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 25 C -0.13 -1.85 4.44 -25.61 -0.11 -1.97 16 26 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.40 6.32 8.37 -40.82 -0.34 5.98 16 30 H 0.11 2.41 4.38 -52.48 -0.23 2.18 16 31 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 32 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 33 H 0.09 0.83 7.73 -51.93 -0.40 0.43 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.47 7.04 -51.93 -0.37 1.10 16 39 H 0.09 1.41 6.16 -51.93 -0.32 1.09 16 LS Contribution 338.76 15.07 5.10 5.10 Total: -1.00 -31.26 338.76 -9.10 -40.36 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.57 Total: 7.62 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: -2.61 Total: 14.16 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.20 Total: -61.16 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.68 Total: -15.90 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.51 Total: -3.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.26 -9.10 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167714239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.898 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds