Wall clock time and date at job start Tue Mar 31 2020 14:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 117.00396 * 2 1 4 4 O 1.20827 * 119.99849 * 359.72674 * 3 2 1 5 5 C 1.50699 * 120.00390 * 179.97438 * 3 2 1 6 6 N 1.46500 * 110.01497 * 32.64104 * 5 3 2 7 7 C 1.38543 * 119.99792 * 59.49920 * 6 5 3 8 8 C 1.40041 * 120.45110 * 1.84149 * 7 6 5 9 9 C 1.38802 * 118.59187 * 179.77342 * 8 7 6 10 10 Cl 1.73598 * 120.33759 * 180.24178 * 9 8 7 11 11 N 1.32201 * 119.32415 * 0.50037 * 9 8 7 12 12 C 1.33421 * 120.86243 * 359.74349 * 11 9 8 13 13 C 1.41580 * 119.23836 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00041 * 173.64946 * 13 12 11 15 15 C 1.40051 * 119.99459 * 353.64840 * 13 12 11 16 16 N 1.30696 * 120.00716 * 6.28080 * 15 13 12 17 17 Si 1.86800 * 119.99652 * 186.27968 * 15 13 12 18 18 H 1.48497 * 109.47421 * 94.98621 * 17 15 13 19 19 H 1.48500 * 109.47416 * 214.98461 * 17 15 13 20 20 H 1.48502 * 109.47236 * 334.98376 * 17 15 13 21 21 N 1.32572 * 120.44503 * 182.11770 * 7 6 5 22 22 C 1.54269 * 110.03392 * 271.20067 * 5 3 2 23 23 C 1.54886 * 104.19709 * 217.10287 * 22 5 3 24 24 C 1.54888 * 102.74799 * 37.93915 * 23 22 5 25 25 C 1.53872 * 110.03525 * 154.03096 * 5 3 2 26 26 H 1.09001 * 109.46987 * 59.99944 * 1 2 3 27 27 H 1.08998 * 109.47258 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46664 * 300.00225 * 1 2 3 29 29 H 0.97002 * 120.00579 * 239.50560 * 6 5 3 30 30 H 1.08004 * 120.69861 * 0.02562 * 8 7 6 31 31 H 0.96993 * 120.00189 * 180.02562 * 16 15 13 32 32 H 1.09000 * 110.48590 * 335.78131 * 22 5 3 33 33 H 1.09004 * 110.48248 * 98.42118 * 22 5 3 34 34 H 1.09003 * 110.75672 * 279.62883 * 23 22 5 35 35 H 1.08993 * 110.75556 * 156.25689 * 23 22 5 36 36 H 1.09000 * 110.48993 * 203.37851 * 24 23 22 37 37 H 1.09002 * 110.48480 * 80.74006 * 24 23 22 38 38 H 1.08999 * 110.03611 * 238.57132 * 25 5 3 39 39 H 1.09003 * 110.03376 * 0.02562 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0050 5 6 3.5664 1.2748 0.0006 6 7 4.1281 0.1433 -0.7414 7 6 3.8026 -0.0402 -2.0755 8 6 2.9684 0.8714 -2.7345 9 6 2.6713 0.6527 -4.0726 10 17 1.6470 1.7573 -4.9352 11 7 3.1721 -0.4082 -4.6820 12 6 3.9604 -1.2640 -4.0291 13 6 4.4785 -2.3887 -4.7156 14 1 5.1980 -3.0323 -4.2317 15 6 4.0577 -2.6663 -6.0222 16 7 3.2831 -1.8231 -6.6525 17 14 4.6036 -4.2419 -6.8642 18 1 3.5622 -5.2852 -6.6854 19 1 4.8034 -3.9853 -8.3132 20 1 5.8793 -4.7078 -6.2636 21 7 4.2724 -1.0842 -2.7441 22 6 4.0952 1.2724 1.4498 23 6 5.3013 2.2436 1.4157 24 6 4.8165 3.3568 0.4541 25 6 4.0251 2.6001 -0.6325 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.7278 -0.4774 -0.2987 30 1 2.5681 1.7286 -2.2136 31 1 2.9915 -2.0157 -7.5573 32 1 3.3306 1.6376 2.1355 33 1 4.4190 0.2717 1.7360 34 1 6.1859 1.7470 1.0170 35 1 5.4988 2.6491 2.4079 36 1 5.6669 3.8775 0.0137 37 1 4.1685 4.0587 0.9790 38 1 4.6663 2.4015 -1.4913 39 1 3.1591 3.1865 -0.9398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167714239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:57 Heat of formation + Delta-G solvation = -59.976731 kcal Electronic energy + Delta-G solvation = -26198.185476 eV Core-core repulsion = 22359.088593 eV Total energy + Delta-G solvation = -3839.096883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.25614 -40.79694 -39.31699 -37.55427 -37.42124 -36.14699 -35.01331 -33.09383 -31.58989 -29.93988 -29.48761 -28.28792 -28.06483 -24.12359 -23.71895 -23.68329 -21.71852 -20.83320 -19.95879 -19.05039 -18.19262 -18.07962 -17.61148 -17.36210 -16.64509 -16.34303 -15.84452 -15.66930 -15.47491 -15.09697 -14.91470 -14.61646 -14.43961 -14.05584 -13.59067 -13.32600 -13.15594 -13.13817 -12.91129 -12.73198 -12.62738 -12.35804 -12.17711 -12.10021 -12.05566 -11.95211 -11.85875 -11.82980 -11.55634 -11.37521 -10.95845 -10.94028 -10.17911 -9.46280 -8.97882 -8.46214 -6.80786 0.57780 0.97591 1.05629 1.09648 1.43272 1.53472 1.59835 1.68945 2.15505 2.25545 2.72829 3.35111 3.37199 3.69436 3.84646 4.06590 4.17535 4.19743 4.22838 4.30797 4.35141 4.41169 4.47279 4.51238 4.58143 4.69655 4.78454 4.89493 4.93388 5.01074 5.11134 5.17555 5.18034 5.29487 5.31686 5.43980 5.89679 6.13680 6.44690 6.55254 6.66688 6.70174 7.16033 8.15370 8.34806 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.004382 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.090676 B = 6388.616889 C = 6892.542745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.460 3.540 4 O -0.529 6.529 5 C 0.196 3.804 6 N -0.692 5.692 7 C 0.461 3.539 8 C -0.404 4.404 9 C 0.249 3.751 10 Cl -0.062 7.062 11 N -0.558 5.558 12 C 0.407 3.593 13 C -0.422 4.422 14 H 0.099 0.901 15 C 0.025 3.975 16 N -0.739 5.739 17 Si 1.001 2.999 18 H -0.262 1.262 19 H -0.265 1.265 20 H -0.251 1.251 21 N -0.652 5.652 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.128 4.128 26 H 0.047 0.953 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.413 0.587 30 H 0.121 0.879 31 H 0.285 0.715 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.968 4.469 13.966 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.302 3.698 4 O -0.418 6.418 5 C 0.106 3.894 6 N -0.331 5.331 7 C 0.213 3.787 8 C -0.436 4.436 9 C 0.069 3.931 10 Cl -0.034 7.034 11 N -0.281 5.281 12 C 0.170 3.830 13 C -0.457 4.457 14 H 0.117 0.883 15 C -0.200 4.200 16 N -0.360 5.360 17 Si 0.820 3.180 18 H -0.187 1.187 19 H -0.189 1.189 20 H -0.174 1.174 21 N -0.382 5.382 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.167 4.167 26 H 0.066 0.934 27 H 0.139 0.861 28 H 0.097 0.903 29 H 0.252 0.748 30 H 0.139 0.861 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.803 4.220 13.199 13.881 hybrid contribution -0.892 0.298 -0.436 1.037 sum -0.090 4.518 12.763 13.540 Atomic orbital electron populations 1.23482 0.75488 1.05174 1.02354 1.86583 1.24513 1.33214 1.83036 1.24631 0.93089 0.81289 0.70757 1.90611 1.67257 1.36888 1.46999 1.21066 0.83672 0.88266 0.96396 1.44131 1.52553 1.30368 1.06010 1.18247 0.86800 0.87802 0.85892 1.21190 1.18409 1.08469 0.95537 1.21836 0.91300 0.91220 0.88718 1.98285 1.66027 1.60077 1.79044 1.68601 1.17078 1.04514 1.37867 1.19915 0.87122 0.91609 0.84312 1.19727 1.21613 1.06339 0.98007 0.88282 1.27109 0.93748 1.01870 0.97273 1.70230 1.20879 1.33811 1.11127 0.84913 0.79847 0.75842 0.77402 1.18718 1.18931 1.17444 1.68268 1.35464 1.23889 1.10602 1.22696 0.99664 1.03421 0.89191 1.22531 0.96409 0.94954 1.01065 1.22384 0.99634 0.97912 0.95456 1.22702 1.00975 0.93232 0.99754 0.93425 0.86105 0.90292 0.74800 0.86114 0.90404 0.88718 0.87801 0.90380 0.87803 0.89935 0.90217 0.91614 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.36 -12.13 10.12 -51.34 -0.52 -12.65 16 3 C 0.46 15.35 4.31 71.24 0.31 15.66 16 4 O -0.53 -19.10 15.20 21.96 0.33 -18.77 16 5 C 0.20 5.59 0.90 3.58 0.00 5.59 16 6 N -0.69 -23.53 4.96 -304.51 -1.51 -25.04 16 7 C 0.46 20.90 6.93 133.39 0.92 21.83 16 8 C -0.40 -18.96 7.65 22.84 0.17 -18.78 16 9 C 0.25 12.86 7.33 84.77 0.62 13.48 16 10 Cl -0.06 -2.79 29.15 -2.72 -0.08 -2.87 16 11 N -0.56 -32.04 7.89 -185.03 -1.46 -33.50 16 12 C 0.41 23.24 7.36 135.16 0.99 24.24 16 13 C -0.42 -22.97 9.37 23.53 0.22 -22.75 16 14 H 0.10 5.12 7.85 -2.91 -0.02 5.10 16 15 C 0.02 1.23 5.49 85.30 0.47 1.70 16 16 N -0.74 -39.38 11.45 21.84 0.25 -39.13 16 17 Si 1.00 37.08 29.56 68.60 2.03 39.11 16 18 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 19 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 20 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 21 N -0.65 -33.97 10.39 -191.53 -1.99 -35.96 16 22 C -0.11 -2.08 6.00 31.67 0.19 -1.89 16 23 C -0.11 -1.69 6.91 31.88 0.22 -1.46 16 24 C -0.12 -2.23 6.83 31.67 0.22 -2.01 16 25 C -0.13 -3.65 4.44 31.32 0.14 -3.51 16 26 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 27 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.41 12.43 8.37 -92.71 -0.78 11.65 16 30 H 0.12 5.35 4.38 -2.91 -0.01 5.34 16 31 H 0.29 13.63 8.29 -92.71 -0.77 12.86 16 32 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16 33 H 0.10 1.61 7.73 -2.38 -0.02 1.60 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 2.17 7.04 -2.39 -0.02 2.16 16 39 H 0.07 2.20 6.16 -2.39 -0.01 2.18 16 Total: -1.00 -70.14 338.76 3.06 -67.07 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.34 Total: 27.69 kcal Atomic # 6 Polarization: 28.38 SS G_CDS: 5.68 Total: 34.05 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -4.71 Total: -133.63 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.19 Total: -31.42 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.08 Total: -2.87 kcal Total: -70.14 3.06 -67.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167714239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.094 kcal (2) G-P(sol) polarization free energy of solvation -70.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds