Wall clock time and date at job start Tue Mar 31 2020 14:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86806 * 119.99667 * 2 1 4 4 H 1.48495 * 109.47446 * 274.60797 * 3 2 1 5 5 H 1.48500 * 109.46936 * 34.61472 * 3 2 1 6 6 H 1.48501 * 109.46989 * 154.60903 * 3 2 1 7 7 C 1.39906 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00222 * 161.87386 * 7 2 1 9 9 C 1.41183 * 120.00191 * 341.87968 * 7 2 1 10 10 C 1.39985 * 119.50833 * 334.17565 * 9 7 2 11 11 C 1.39864 * 120.02061 * 179.97438 * 10 9 7 12 12 C 1.40856 * 121.16604 * 180.02562 * 11 10 9 13 13 C 1.36191 * 119.60530 * 180.02562 * 12 11 10 14 14 C 1.39247 * 120.95759 * 0.02562 * 13 12 11 15 15 C 1.36524 * 120.99222 * 0.23708 * 14 13 12 16 16 C 1.39885 * 119.72637 * 359.48862 * 15 14 13 17 17 C 1.46056 * 121.16674 * 180.24868 * 16 15 14 18 18 N 1.39300 * 120.29765 * 0.29838 * 17 16 15 19 19 C 1.46501 * 120.00002 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47467 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.46772 * 65.00231 * 20 19 18 22 22 C 1.42905 * 113.99731 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46860 * 59.99874 * 22 21 20 24 24 F 1.39904 * 109.46843 * 179.97438 * 22 21 20 25 25 F 1.39900 * 109.46863 * 299.99830 * 22 21 20 26 26 C 1.36224 * 119.39780 * 180.27723 * 17 16 15 27 27 H 0.96996 * 120.00531 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.98992 * 0.02562 * 10 9 7 29 29 H 1.07997 * 120.19157 * 0.04508 * 12 11 10 30 30 H 1.08002 * 119.52403 * 180.02562 * 13 12 11 31 31 H 1.08001 * 119.50355 * 179.97438 * 14 13 12 32 32 H 1.07998 * 120.14118 * 179.73272 * 15 14 13 33 33 H 0.97002 * 120.00128 * 359.97438 * 18 17 16 34 34 H 1.09003 * 109.47370 * 300.00872 * 19 18 17 35 35 H 1.09011 * 109.46962 * 59.99863 * 19 18 17 36 36 H 1.08996 * 109.47074 * 185.00050 * 20 19 18 37 37 H 1.09002 * 109.46962 * 305.00163 * 20 19 18 38 38 H 1.08001 * 119.67216 * 179.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3924 2.1028 -1.3955 5 1 1.4919 2.6226 0.7953 6 1 3.5852 1.4142 0.6004 7 6 2.0080 -1.2116 0.0005 8 1 3.0479 -1.2349 -0.2904 9 6 1.3547 -2.4038 0.3813 10 6 0.2524 -2.3414 1.2419 11 6 -0.4031 -3.5159 1.6257 12 6 -1.5148 -3.4811 2.4899 13 6 -2.1289 -4.6442 2.8434 14 6 -1.6735 -5.8693 2.3631 15 6 -0.5957 -5.9403 1.5281 16 6 0.0579 -4.7668 1.1378 17 6 1.2105 -4.8058 0.2415 18 7 1.6785 -6.0227 -0.2488 19 6 2.8348 -6.0543 -1.1479 20 6 3.1393 -7.5023 -1.5367 21 8 2.0523 -8.0291 -2.3002 22 6 2.2366 -9.3840 -2.7155 23 9 2.3843 -10.2009 -1.5895 24 9 1.1225 -9.8018 -3.4514 25 9 3.3832 -9.4757 -3.5119 26 6 1.8233 -3.6413 -0.1108 27 1 -0.4851 0.8400 -0.0004 28 1 -0.0925 -1.3861 1.6090 29 1 -1.8782 -2.5376 2.8697 30 1 -2.9814 -4.6159 3.5058 31 1 -2.1779 -6.7773 2.6590 32 1 -0.2515 -6.8983 1.1673 33 1 1.2388 -6.8493 0.0050 34 1 2.6133 -5.4764 -2.0452 35 1 3.6996 -5.6237 -0.6428 36 1 4.0512 -7.5344 -2.1328 37 1 3.2734 -8.1001 -0.6351 38 1 2.6762 -3.6651 -0.7729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168172668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:45 Heat of formation + Delta-G solvation = -175.252866 kcal Electronic energy + Delta-G solvation = -26649.940927 eV Core-core repulsion = 22234.128654 eV Total energy + Delta-G solvation = -4415.812273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.41638 -48.15283 -48.11653 -39.10308 -38.49861 -36.17134 -35.14327 -32.82113 -31.17296 -29.57766 -29.06222 -26.94527 -25.50826 -25.06993 -23.17129 -21.79622 -21.21898 -20.01863 -19.69606 -19.21217 -18.95879 -17.78229 -16.57801 -16.01139 -15.94110 -15.54847 -15.04392 -14.92597 -14.88837 -14.53977 -14.50796 -14.41747 -14.28759 -14.25834 -13.79852 -13.55954 -13.47547 -12.99385 -12.93946 -12.39910 -12.24222 -11.89626 -11.74116 -11.45826 -11.16360 -11.13847 -10.81479 -10.69668 -10.46953 -10.29653 -9.71878 -9.47234 -9.40862 -8.81947 -8.03982 -7.42425 -6.82941 -6.07024 -4.34500 1.64768 1.92069 2.36453 2.83566 2.97232 3.04397 3.09331 3.48958 3.76294 3.79425 3.87625 3.92362 4.11556 4.52395 4.74760 4.85269 4.87902 5.37160 5.65901 5.68824 5.73360 5.80734 5.90928 5.96795 6.23944 6.40575 6.66729 6.68959 6.78714 7.01791 7.07424 7.09717 7.36631 7.45820 7.57277 7.61836 7.89836 8.04663 8.12348 8.25528 8.37873 8.64080 8.84111 8.93803 10.11175 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.003388 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.262427 B = 8263.489684 C =10124.103064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.450 4.450 8 H 0.078 0.922 9 C 0.143 3.857 10 C -0.244 4.244 11 C 0.026 3.974 12 C -0.146 4.146 13 C -0.111 4.111 14 C -0.208 4.208 15 C -0.068 4.068 16 C -0.166 4.166 17 C 0.216 3.784 18 N -0.753 5.753 19 C 0.139 3.861 20 C 0.043 3.957 21 O -0.365 6.365 22 C 0.593 3.407 23 F -0.177 7.177 24 F -0.143 7.143 25 F -0.178 7.178 26 C -0.244 4.244 27 H 0.282 0.718 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.392 0.608 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -12.953 -2.979 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.096 0.904 9 C 0.139 3.861 10 C -0.264 4.264 11 C 0.025 3.975 12 C -0.164 4.164 13 C -0.129 4.129 14 C -0.226 4.226 15 C -0.087 4.087 16 C -0.169 4.169 17 C 0.116 3.884 18 N -0.386 5.386 19 C 0.014 3.986 20 C -0.032 4.032 21 O -0.289 6.289 22 C 0.501 3.499 23 F -0.160 7.160 24 F -0.124 7.124 25 F -0.160 7.160 26 C -0.269 4.269 27 H 0.093 0.907 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.227 0.773 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.047 -12.672 -3.174 14.005 hybrid contribution 0.242 0.113 -0.103 0.286 sum 5.289 -12.559 -3.276 14.016 Atomic orbital electron populations 1.69876 1.07627 1.29354 1.32914 1.25926 0.94714 1.01348 0.92411 0.86343 0.80842 0.80767 0.79083 1.19553 1.19930 1.18342 1.19625 0.98111 0.91421 1.38699 0.90379 1.17186 0.90627 0.90961 0.87324 1.20977 1.03132 0.95646 1.06688 1.17756 0.93403 0.92532 0.93809 1.20867 0.97474 0.97131 1.00976 1.20462 0.99291 0.93016 1.00108 1.20183 1.00789 0.96676 1.04989 1.20408 0.95466 0.95934 0.96866 1.18222 0.99389 0.93336 1.05961 1.18287 0.92437 0.84969 0.92737 1.44216 1.34185 1.06541 1.53683 1.21213 0.90897 0.91747 0.94773 1.23322 0.88135 0.96604 0.95105 1.88450 1.45735 1.22274 1.72403 1.19579 0.74085 0.80902 0.75292 1.93260 1.95509 1.74379 1.52813 1.93275 1.52888 1.89324 1.76919 1.93253 1.51708 1.96076 1.74991 1.20349 1.05597 0.91612 1.09368 0.90713 0.86453 0.87434 0.88350 0.88490 0.88694 0.77323 0.90945 0.89703 0.89485 0.90270 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.60 11.01 55.54 0.61 -18.98 16 2 C 0.08 1.84 5.09 -17.35 -0.09 1.75 16 3 Si 0.91 17.95 29.60 -169.99 -5.03 12.92 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.45 -11.39 8.99 -37.84 -0.34 -11.73 16 8 H 0.08 1.87 7.91 -52.48 -0.42 1.45 16 9 C 0.14 3.65 5.55 -107.01 -0.59 3.06 16 10 C -0.24 -6.33 8.39 -38.32 -0.32 -6.65 16 11 C 0.03 0.63 5.74 -106.87 -0.61 0.01 16 12 C -0.15 -3.18 9.78 -39.33 -0.38 -3.57 16 13 C -0.11 -2.15 9.95 -39.94 -0.40 -2.55 16 14 C -0.21 -3.92 9.96 -39.83 -0.40 -4.32 16 15 C -0.07 -1.34 9.54 -39.58 -0.38 -1.72 16 16 C -0.17 -3.73 5.90 -104.72 -0.62 -4.35 16 17 C 0.22 4.53 6.78 -82.06 -0.56 3.97 16 18 N -0.75 -12.20 5.62 -57.36 -0.32 -12.53 16 19 C 0.14 1.75 5.29 -4.04 -0.02 1.73 16 20 C 0.04 0.42 5.79 37.16 0.22 0.63 16 21 O -0.36 -4.25 10.52 -35.23 -0.37 -4.62 16 22 C 0.59 6.17 3.75 101.05 0.38 6.55 16 23 F -0.18 -1.79 16.86 2.25 0.04 -1.75 16 24 F -0.14 -1.59 17.53 2.25 0.04 -1.55 16 25 F -0.18 -1.74 16.86 2.25 0.04 -1.70 16 26 C -0.24 -5.55 8.94 -39.19 -0.35 -5.90 16 27 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 28 H 0.12 3.18 6.16 -52.49 -0.32 2.85 16 29 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 30 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.10 1.60 6.53 -52.49 -0.34 1.25 16 33 H 0.39 5.89 6.71 -40.82 -0.27 5.61 16 34 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 35 H 0.09 0.99 7.93 -51.92 -0.41 0.58 16 36 H 0.09 0.64 7.73 -51.93 -0.40 0.23 16 37 H 0.08 0.67 7.73 -51.93 -0.40 0.27 16 38 H 0.10 2.02 6.64 -52.49 -0.35 1.68 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -27.85 336.52 -8.13 -35.98 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -3.73 Total: 10.25 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -4.47 Total: -23.07 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.29 Total: -31.51 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.37 Total: -4.62 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.12 Total: -5.01 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.85 -8.13 -35.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168172668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.278 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds