Wall clock time and date at job start Tue Mar 31 2020 14:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86806 * 119.99667 * 2 1 4 4 H 1.48495 * 109.47446 * 274.60797 * 3 2 1 5 5 H 1.48500 * 109.46936 * 34.61472 * 3 2 1 6 6 H 1.48501 * 109.46989 * 154.60903 * 3 2 1 7 7 C 1.39906 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00222 * 161.87386 * 7 2 1 9 9 C 1.41183 * 120.00191 * 341.87968 * 7 2 1 10 10 C 1.39985 * 119.50833 * 334.17565 * 9 7 2 11 11 C 1.39864 * 120.02061 * 179.97438 * 10 9 7 12 12 C 1.40856 * 121.16604 * 180.02562 * 11 10 9 13 13 C 1.36191 * 119.60530 * 180.02562 * 12 11 10 14 14 C 1.39247 * 120.95759 * 0.02562 * 13 12 11 15 15 C 1.36524 * 120.99222 * 0.23708 * 14 13 12 16 16 C 1.39885 * 119.72637 * 359.48862 * 15 14 13 17 17 C 1.46056 * 121.16674 * 180.24868 * 16 15 14 18 18 N 1.39300 * 120.29765 * 0.29838 * 17 16 15 19 19 C 1.46501 * 120.00002 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47467 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.46772 * 65.00231 * 20 19 18 22 22 C 1.42905 * 113.99731 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46860 * 59.99874 * 22 21 20 24 24 F 1.39904 * 109.46843 * 179.97438 * 22 21 20 25 25 F 1.39900 * 109.46863 * 299.99830 * 22 21 20 26 26 C 1.36224 * 119.39780 * 180.27723 * 17 16 15 27 27 H 0.96996 * 120.00531 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.98992 * 0.02562 * 10 9 7 29 29 H 1.07997 * 120.19157 * 0.04508 * 12 11 10 30 30 H 1.08002 * 119.52403 * 180.02562 * 13 12 11 31 31 H 1.08001 * 119.50355 * 179.97438 * 14 13 12 32 32 H 1.07998 * 120.14118 * 179.73272 * 15 14 13 33 33 H 0.97002 * 120.00128 * 359.97438 * 18 17 16 34 34 H 1.09003 * 109.47370 * 300.00872 * 19 18 17 35 35 H 1.09011 * 109.46962 * 59.99863 * 19 18 17 36 36 H 1.08996 * 109.47074 * 185.00050 * 20 19 18 37 37 H 1.09002 * 109.46962 * 305.00163 * 20 19 18 38 38 H 1.08001 * 119.67216 * 179.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3924 2.1028 -1.3955 5 1 1.4919 2.6226 0.7953 6 1 3.5852 1.4142 0.6004 7 6 2.0080 -1.2116 0.0005 8 1 3.0479 -1.2349 -0.2904 9 6 1.3547 -2.4038 0.3813 10 6 0.2524 -2.3414 1.2419 11 6 -0.4031 -3.5159 1.6257 12 6 -1.5148 -3.4811 2.4899 13 6 -2.1289 -4.6442 2.8434 14 6 -1.6735 -5.8693 2.3631 15 6 -0.5957 -5.9403 1.5281 16 6 0.0579 -4.7668 1.1378 17 6 1.2105 -4.8058 0.2415 18 7 1.6785 -6.0227 -0.2488 19 6 2.8348 -6.0543 -1.1479 20 6 3.1393 -7.5023 -1.5367 21 8 2.0523 -8.0291 -2.3002 22 6 2.2366 -9.3840 -2.7155 23 9 2.3843 -10.2009 -1.5895 24 9 1.1225 -9.8018 -3.4514 25 9 3.3832 -9.4757 -3.5119 26 6 1.8233 -3.6413 -0.1108 27 1 -0.4851 0.8400 -0.0004 28 1 -0.0925 -1.3861 1.6090 29 1 -1.8782 -2.5376 2.8697 30 1 -2.9814 -4.6159 3.5058 31 1 -2.1779 -6.7773 2.6590 32 1 -0.2515 -6.8983 1.1673 33 1 1.2388 -6.8493 0.0050 34 1 2.6133 -5.4764 -2.0452 35 1 3.6996 -5.6237 -0.6428 36 1 4.0512 -7.5344 -2.1328 37 1 3.2734 -8.1001 -0.6351 38 1 2.6762 -3.6651 -0.7729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168172668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:45 Heat of formation + Delta-G solvation = -190.182004 kcal Electronic energy + Delta-G solvation = -26650.588303 eV Core-core repulsion = 22234.128654 eV Total energy + Delta-G solvation = -4416.459649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.21312 -48.96976 -48.89348 -40.63540 -39.50752 -37.65347 -36.76554 -34.47908 -32.61809 -31.27984 -30.42768 -28.51698 -26.94239 -26.24048 -24.32430 -23.42260 -22.79328 -21.62785 -20.52639 -20.01790 -19.80232 -19.45556 -18.07071 -17.70569 -16.99293 -16.74597 -16.49256 -16.06153 -15.91600 -15.69961 -15.63296 -15.33557 -15.14645 -15.09372 -15.00826 -14.71098 -14.64893 -14.54874 -14.43246 -14.10304 -13.79100 -13.45041 -13.14683 -12.79206 -12.65384 -12.56532 -12.39134 -12.06268 -11.99134 -11.77304 -11.41136 -11.18115 -11.10636 -10.56424 -9.57483 -9.17779 -8.61775 -7.70940 -6.24055 0.26138 0.66896 0.83828 1.37665 1.41715 1.54263 1.75496 2.04319 2.20841 2.41104 2.53455 2.96855 3.10438 3.10750 3.66009 3.90600 3.98897 4.12381 4.15216 4.22956 4.37537 4.44651 4.65649 4.74058 4.80772 4.99987 5.07756 5.08621 5.15862 5.23800 5.31988 5.49525 5.70056 5.78254 5.89911 5.92794 6.13813 6.31469 6.45722 6.53869 6.78330 6.97000 7.00831 7.13352 8.35068 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.003388 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.262427 B = 8263.489684 C =10124.103064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.487 4.487 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.282 4.282 11 C 0.005 3.995 12 C -0.176 4.176 13 C -0.098 4.098 14 C -0.199 4.199 15 C -0.071 4.071 16 C -0.188 4.188 17 C 0.231 3.769 18 N -0.740 5.740 19 C 0.132 3.868 20 C 0.047 3.953 21 O -0.384 6.384 22 C 0.600 3.400 23 F -0.174 7.174 24 F -0.149 7.149 25 F -0.173 7.173 26 C -0.272 4.272 27 H 0.286 0.714 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.401 0.599 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -15.515 -2.804 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.516 4.516 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.303 4.303 11 C 0.004 3.996 12 C -0.195 4.195 13 C -0.116 4.116 14 C -0.218 4.218 15 C -0.089 4.089 16 C -0.190 4.190 17 C 0.128 3.872 18 N -0.372 5.372 19 C 0.008 3.992 20 C -0.027 4.027 21 O -0.308 6.308 22 C 0.509 3.491 23 F -0.156 7.156 24 F -0.131 7.131 25 F -0.156 7.156 26 C -0.298 4.298 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.237 0.763 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.115 0.885 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.431 -15.291 -3.011 16.504 hybrid contribution 0.010 0.632 -0.095 0.639 sum 5.441 -14.659 -3.106 15.942 Atomic orbital electron populations 1.69965 1.09251 1.30374 1.34315 1.26792 0.95368 1.04627 0.91366 0.85239 0.79320 0.76057 0.79380 1.18579 1.19469 1.17909 1.19900 0.98504 0.92539 1.40673 0.90099 1.17537 0.90896 0.92481 0.87485 1.20845 1.05002 0.95443 1.09053 1.18063 0.94153 0.92896 0.94466 1.21000 0.97956 0.98474 1.02028 1.20897 0.99311 0.92258 0.99159 1.20715 0.99952 0.97876 1.03246 1.20769 0.95340 0.96164 0.96596 1.18594 1.00247 0.93773 1.06421 1.18312 0.91331 0.86216 0.91348 1.44297 1.34694 1.05088 1.53127 1.21417 0.89866 0.94186 0.93701 1.23379 0.88531 0.94507 0.96273 1.88418 1.46688 1.22939 1.72804 1.19413 0.73994 0.80464 0.75277 1.93268 1.95478 1.74231 1.52637 1.93263 1.53323 1.89359 1.77107 1.93264 1.51372 1.96028 1.74892 1.20389 1.06973 0.91469 1.10927 0.90328 0.89148 0.87718 0.84825 0.84436 0.85379 0.76328 0.92061 0.88414 0.86629 0.88511 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.87 11.01 21.82 0.24 -43.63 16 2 C 0.03 1.76 5.09 85.24 0.43 2.19 16 3 Si 0.98 38.21 29.60 68.60 2.03 40.24 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 7 C -0.49 -26.12 8.99 23.40 0.21 -25.91 16 8 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 9 C 0.12 6.49 5.55 -21.41 -0.12 6.37 16 10 C -0.28 -15.71 8.39 23.09 0.19 -15.52 16 11 C 0.00 0.25 5.74 -21.32 -0.12 0.13 16 12 C -0.18 -7.79 9.78 22.43 0.22 -7.57 16 13 C -0.10 -3.58 9.95 22.04 0.22 -3.36 16 14 C -0.20 -6.75 9.96 22.11 0.22 -6.53 16 15 C -0.07 -2.56 9.54 22.27 0.21 -2.35 16 16 C -0.19 -8.34 5.90 -19.93 -0.12 -8.46 16 17 C 0.23 9.66 6.78 39.51 0.27 9.93 16 18 N -0.74 -22.60 5.62 -335.38 -1.89 -24.48 16 19 C 0.13 3.09 5.29 86.38 0.46 3.54 16 20 C 0.05 0.77 5.79 71.98 0.42 1.18 16 21 O -0.38 -7.95 10.52 -148.98 -1.57 -9.51 16 22 C 0.60 10.97 3.75 113.37 0.43 11.39 16 23 F -0.17 -3.01 16.86 44.97 0.76 -2.26 16 24 F -0.15 -3.04 17.53 44.97 0.79 -2.26 16 25 F -0.17 -2.94 16.86 44.97 0.76 -2.18 16 26 C -0.27 -12.79 8.94 22.52 0.20 -12.59 16 27 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 28 H 0.09 5.36 6.16 -2.91 -0.02 5.34 16 29 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 31 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.13 3.74 6.53 -2.91 -0.02 3.72 16 33 H 0.40 10.80 6.71 -92.71 -0.62 10.18 16 34 H 0.06 1.61 7.94 -2.39 -0.02 1.59 16 35 H 0.10 2.10 7.93 -2.38 -0.02 2.08 16 36 H 0.12 1.27 7.73 -2.39 -0.02 1.25 16 37 H 0.10 1.27 7.73 -2.39 -0.02 1.25 16 38 H 0.11 4.70 6.64 -2.91 -0.02 4.68 16 Total: -1.00 -64.53 336.52 4.74 -59.79 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.51 Total: 31.84 kcal Atomic # 6 Polarization: -50.66 SS G_CDS: 3.12 Total: -47.54 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -1.65 Total: -68.12 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -1.57 Total: -9.51 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 2.30 Total: -6.70 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -64.53 4.74 -59.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168172668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.396 kcal (2) G-P(sol) polarization free energy of solvation -64.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds