Wall clock time and date at job start Tue Mar 31 2020 14:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35852 * 116.99521 * 2 1 4 4 C 1.38724 * 120.11813 * 269.97686 * 3 2 1 5 5 F 1.35103 * 119.99669 * 0.04545 * 4 3 2 6 6 C 1.38527 * 120.00883 * 180.02562 * 4 3 2 7 7 F 1.35102 * 119.88504 * 180.02562 * 6 4 3 8 8 C 1.38655 * 120.23543 * 359.97438 * 6 4 3 9 9 C 1.37901 * 120.24081 * 0.02562 * 8 6 4 10 10 C 1.39403 * 119.98858 * 0.02562 * 9 8 6 11 11 C 1.48263 * 120.11723 * 180.27409 * 10 9 8 12 12 N 1.30833 * 126.42057 * 179.74127 * 11 10 9 13 13 O 1.21288 * 110.08458 * 179.97438 * 12 11 10 14 14 C 1.33672 * 110.03960 * 0.02562 * 13 12 11 15 15 C 1.50700 * 126.42876 * 180.02562 * 14 13 12 16 16 N 1.46898 * 109.46992 * 269.97382 * 15 14 13 17 17 C 1.46898 * 110.99962 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47444 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99968 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00735 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00308 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99540 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47225 * 90.00360 * 22 20 18 24 24 H 1.48499 * 109.47151 * 210.00131 * 22 20 18 25 25 H 1.48502 * 109.47307 * 330.00553 * 22 20 18 26 26 N 1.30968 * 107.14232 * 359.76562 * 14 13 12 27 27 H 1.09005 * 109.46638 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47006 * 299.99717 * 1 2 3 29 29 H 1.08994 * 109.47336 * 59.99693 * 1 2 3 30 30 H 1.08001 * 119.87993 * 180.02562 * 8 6 4 31 31 H 1.07996 * 120.00788 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47146 * 29.97704 * 15 14 13 33 33 H 1.09003 * 109.47071 * 149.97406 * 15 14 13 34 34 H 1.00897 * 111.00222 * 56.04636 * 16 15 14 35 35 H 1.08998 * 109.47202 * 300.00225 * 17 16 15 36 36 H 1.09006 * 109.47319 * 60.00103 * 17 16 15 37 37 H 0.97004 * 119.99927 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 2.3621 1.8305 -1.1999 5 9 2.0561 1.2309 -2.3713 6 6 2.9914 3.0646 -1.1973 7 9 3.2979 3.6664 -2.3674 8 6 3.3068 3.6849 0.0019 9 6 2.9969 3.0776 1.2006 10 6 2.3646 1.8352 1.2092 11 6 2.0246 1.1825 2.4963 12 7 1.4303 0.0268 2.6480 13 8 1.2987 -0.2222 3.8277 14 6 1.8061 0.7708 4.5648 15 6 1.8384 0.8418 6.0698 16 7 0.6169 1.4976 6.5554 17 6 0.6137 1.5852 8.0217 18 6 -0.6519 2.2616 8.4819 19 1 -1.3809 2.5935 7.7574 20 6 -0.8789 2.4575 9.8276 21 7 -1.9837 3.0473 10.2291 22 14 0.3822 1.8840 11.0807 23 1 1.3550 2.9759 11.3394 24 1 -0.3059 1.5240 12.3464 25 1 1.1003 0.6963 10.5524 26 7 2.2750 1.6678 3.7337 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.7971 4.6473 -0.0027 31 1 3.2440 3.5643 2.1325 32 1 1.8971 -0.1664 6.4799 33 1 2.7094 1.4147 6.3879 34 1 -0.2070 1.0218 6.2195 35 1 0.6642 0.5824 8.4458 36 1 1.4763 2.1636 8.3531 37 1 -2.1435 3.1848 11.1760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:04 Heat of formation + Delta-G solvation = -14.918484 kcal Electronic energy + Delta-G solvation = -26343.345137 eV Core-core repulsion = 21954.405447 eV Total energy + Delta-G solvation = -4388.939691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.91068 -48.97209 -45.58569 -40.29510 -37.75285 -36.34861 -35.65766 -33.17708 -32.16002 -30.88473 -30.61096 -28.48908 -27.37282 -25.40053 -24.99775 -23.50054 -22.82629 -21.52263 -21.33547 -18.88948 -18.26765 -18.13582 -18.00881 -17.22139 -16.96077 -16.74890 -16.44728 -15.76530 -15.68103 -15.57446 -15.22862 -14.90155 -14.67305 -14.45517 -14.03974 -13.79739 -13.66147 -13.02662 -12.95066 -12.87416 -12.55816 -12.54202 -11.92789 -11.87915 -11.82606 -11.65846 -11.12101 -10.85753 -10.76770 -10.54974 -10.29821 -9.98060 -9.45930 -9.34262 -8.99989 -8.70166 -7.86695 -6.16068 -4.16231 -0.03086 0.33923 1.17451 2.08436 2.72404 2.77338 2.96504 3.18683 3.21864 3.28924 3.29974 3.53005 3.69526 3.89197 4.19574 4.31849 4.33770 4.72468 4.83100 4.90714 4.92311 4.99614 5.09125 5.16386 5.24347 5.31644 5.38017 5.44472 5.52927 5.64595 5.70723 5.90671 6.01482 6.49683 6.77971 6.87095 7.32381 7.59584 7.94029 8.06334 8.47130 8.90808 9.43463 10.96874 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.002381 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.285169 B =11759.183700 C =12210.133241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.312 6.312 3 C 0.123 3.877 4 C 0.044 3.956 5 F -0.117 7.117 6 C 0.096 3.904 7 F -0.121 7.121 8 C -0.132 4.132 9 C -0.041 4.041 10 C -0.016 4.016 11 C 0.198 3.802 12 N -0.355 5.355 13 O 0.083 5.917 14 C 0.208 3.792 15 C 0.144 3.856 16 N -0.672 5.672 17 C 0.167 3.833 18 C -0.522 4.522 19 H 0.080 0.920 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.878 3.122 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.266 1.266 26 N -0.460 5.460 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.343 0.657 35 H -0.007 1.007 36 H 0.030 0.970 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.682 -3.374 -20.934 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.228 6.228 3 C 0.075 3.925 4 C 0.024 3.976 5 F -0.096 7.096 6 C 0.075 3.925 7 F -0.099 7.099 8 C -0.150 4.150 9 C -0.061 4.061 10 C -0.019 4.019 11 C -0.071 4.071 12 N -0.060 5.060 13 O 0.020 5.980 14 C -0.013 4.013 15 C 0.013 3.987 16 N -0.305 5.305 17 C 0.040 3.960 18 C -0.560 4.560 19 H 0.098 0.902 20 C -0.132 4.132 21 N -0.534 5.534 22 Si 0.705 3.295 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.191 1.191 26 N -0.193 5.193 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.177 0.823 31 H 0.180 0.820 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.011 0.989 36 H 0.048 0.952 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.839 -3.006 -21.712 24.452 hybrid contribution 0.188 -1.015 0.665 1.228 sum 11.027 -4.021 -21.047 24.098 Atomic orbital electron populations 1.23045 0.77108 1.04270 1.00680 1.86079 1.21000 1.21909 1.93822 1.18323 0.97668 0.87187 0.89333 1.17755 1.05427 0.92398 0.82056 1.91547 1.91133 1.82731 1.44143 1.17669 1.00797 0.91102 0.82907 1.91566 1.90685 1.82392 1.45254 1.21099 1.02444 1.02098 0.89405 1.21141 0.93716 0.92023 0.99254 1.17541 1.02739 0.94601 0.86994 1.23376 1.00193 0.90593 0.92986 1.75074 1.18618 1.16666 0.95602 1.85324 1.59024 1.41778 1.11890 1.28952 0.90958 0.82406 0.99000 1.20556 0.98886 1.00335 0.78945 1.60567 1.01396 1.54361 1.14165 1.20074 0.99025 0.95557 0.81366 1.20955 1.03332 1.38706 0.92996 0.90175 1.24889 0.95365 0.94637 0.98274 1.69886 1.25201 1.42496 1.15861 0.86823 0.81827 0.79659 0.81189 1.20001 1.21121 1.19111 1.72003 1.22444 1.26810 0.97995 0.87826 0.93036 0.93359 0.82281 0.82003 0.91754 0.86710 0.83931 0.98947 0.95238 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.54 101.05 1.06 1.50 16 2 O -0.31 -3.99 8.86 -19.27 -0.17 -4.16 16 3 C 0.12 1.48 5.73 -38.82 -0.22 1.25 16 4 C 0.04 0.50 7.31 -39.30 -0.29 0.21 16 5 F -0.12 -1.40 17.02 2.25 0.04 -1.36 16 6 C 0.10 0.92 7.30 -39.32 -0.29 0.63 16 7 F -0.12 -1.19 17.17 2.25 0.04 -1.16 16 8 C -0.13 -1.01 10.01 -39.55 -0.40 -1.41 16 9 C -0.04 -0.38 9.69 -39.27 -0.38 -0.77 16 10 C -0.02 -0.19 5.89 -104.76 -0.62 -0.81 16 11 C 0.20 2.80 7.77 -156.09 -1.21 1.59 16 12 N -0.35 -5.17 9.64 30.98 0.30 -4.87 16 13 O 0.08 1.17 11.29 18.03 0.20 1.37 16 14 C 0.21 2.94 8.01 -12.98 -0.10 2.84 16 15 C 0.14 2.00 6.31 -4.98 -0.03 1.97 16 16 N -0.67 -12.23 6.48 -116.34 -0.75 -12.99 16 17 C 0.17 3.61 4.51 -4.98 -0.02 3.58 16 18 C -0.52 -13.99 9.87 -34.44 -0.34 -14.33 16 19 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -26.49 13.96 55.43 0.77 -25.71 16 22 Si 0.88 20.17 27.47 -169.99 -4.67 15.51 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -5.75 6.54 56.52 0.37 -5.38 16 26 N -0.46 -6.75 11.26 -9.88 -0.11 -6.86 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.57 7.57 -51.93 -0.39 0.17 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.16 1.37 7.87 -52.49 -0.41 0.96 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.34 6.08 8.72 -39.29 -0.34 5.74 16 35 H -0.01 -0.15 7.20 -51.93 -0.37 -0.52 16 36 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -30.88 338.22 -5.81 -36.69 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -3.62 Total: 0.34 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.93 Total: -1.90 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.21 Total: -50.44 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: 0.03 Total: -2.79 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.88 -5.81 -36.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.774 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds