Wall clock time and date at job start Tue Mar 31 2020 14:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48493 * 109.47446 * 265.22389 * 3 2 1 5 5 H 1.48501 * 109.46986 * 25.22515 * 3 2 1 6 6 H 1.48497 * 109.47163 * 145.22030 * 3 2 1 7 7 C 1.37875 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00329 * 354.55426 * 7 2 1 9 9 C 1.50703 * 120.00054 * 174.55781 * 7 2 1 10 10 H 1.09000 * 109.46840 * 356.08116 * 9 7 2 11 11 O 1.42897 * 109.47167 * 236.07946 * 9 7 2 12 12 C 1.42904 * 113.99978 * 89.99815 * 11 9 7 13 13 C 1.50697 * 109.47219 * 179.97438 * 12 11 9 14 14 C 1.40797 * 126.66904 * 359.71378 * 13 12 11 15 15 C 1.37268 * 103.86403 * 179.91299 * 14 13 12 16 16 C 1.47000 * 126.97064 * 180.13232 * 15 14 13 17 17 C 1.36328 * 125.96160 * 180.27779 * 16 15 14 18 18 C 1.40705 * 106.71851 * 179.97438 * 17 16 15 19 19 C 1.34895 * 107.07980 * 0.02562 * 18 17 16 20 20 O 1.34219 * 108.72726 * 359.75256 * 19 18 17 21 21 O 1.34628 * 106.05963 * 0.33950 * 15 14 13 22 22 N 1.20891 * 111.40108 * 359.77427 * 21 15 14 23 23 C 1.50699 * 109.46999 * 116.07935 * 9 7 2 24 24 C 1.38236 * 120.00018 * 82.41225 * 23 9 7 25 25 C 1.38236 * 120.00310 * 179.80799 * 24 23 9 26 26 C 1.38234 * 119.99584 * 0.39339 * 25 24 23 27 27 C 1.38240 * 120.00226 * 359.85853 * 26 25 24 28 28 C 1.38232 * 120.00215 * 262.67797 * 23 9 7 29 29 H 0.96992 * 120.00330 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47072 * 300.00294 * 12 11 9 31 31 H 1.08998 * 109.46898 * 59.99927 * 12 11 9 32 32 H 1.07996 * 128.07369 * 0.03701 * 14 13 12 33 33 H 1.07996 * 126.64864 * 359.95839 * 17 16 15 34 34 H 1.08001 * 126.46558 * 179.97438 * 18 17 16 35 35 H 1.08001 * 125.63256 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.99810 * 359.97438 * 24 23 9 37 37 H 1.07997 * 120.00108 * 180.22721 * 25 24 23 38 38 H 1.07999 * 119.99981 * 179.83107 * 26 25 24 39 39 H 1.07998 * 120.00078 * 179.97438 * 27 26 25 40 40 H 1.08004 * 120.00006 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5975 1.9882 -1.3951 5 1 1.3996 2.6797 0.5967 6 1 3.4924 1.4715 0.7986 7 6 2.0045 -1.1940 -0.0005 8 1 1.4683 -2.1273 0.0878 9 6 3.5065 -1.1968 -0.1243 10 1 3.8607 -0.1767 -0.2722 11 8 3.8909 -2.0013 -1.2411 12 6 3.9852 -1.2806 -2.4715 13 6 4.3956 -2.2216 -3.5747 14 6 4.6596 -3.5990 -3.4501 15 6 4.9857 -3.9880 -4.7255 16 6 5.3512 -5.3403 -5.1710 17 6 5.6770 -5.7031 -6.4442 18 6 5.9545 -7.0821 -6.4136 19 6 5.7867 -7.4919 -5.1394 20 8 5.4276 -6.4371 -4.3913 21 8 4.9075 -2.8789 -5.4846 22 7 4.5806 -1.9175 -4.8287 23 6 4.1131 -1.7618 1.1342 24 6 4.2060 -3.1307 1.3026 25 6 4.7661 -3.6489 2.4553 26 6 5.2259 -2.7982 3.4431 27 6 5.1283 -1.4293 3.2770 28 6 4.5717 -0.9112 2.1226 29 1 -0.4850 0.8399 0.0004 30 1 3.0169 -0.8407 -2.7100 31 1 4.7291 -0.4900 -2.3733 32 1 4.6141 -4.2079 -2.5594 33 1 5.7145 -5.0572 -7.3089 34 1 6.2460 -7.6969 -7.2524 35 1 5.9236 -8.5011 -4.7799 36 1 3.8435 -3.7953 0.5324 37 1 4.8420 -4.7183 2.5852 38 1 5.6610 -3.2031 4.3449 39 1 5.4871 -0.7647 4.0490 40 1 4.4956 0.1583 1.9928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222714244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:41 Heat of formation + Delta-G solvation = 67.887143 kcal Electronic energy + Delta-G solvation = -26072.852664 eV Core-core repulsion = 22209.440473 eV Total energy + Delta-G solvation = -3863.412191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.79693 -42.73913 -38.76267 -37.02758 -34.23975 -33.46517 -32.82900 -32.57244 -31.13144 -30.25585 -28.84495 -27.53503 -26.52992 -23.43002 -22.92285 -22.58616 -21.90854 -21.52436 -20.27699 -19.98735 -18.40717 -17.65813 -17.26098 -16.67257 -16.34111 -16.18495 -15.73236 -15.24751 -14.90172 -14.57517 -14.15265 -13.98096 -13.69551 -13.43854 -13.16789 -12.98302 -12.88335 -12.71535 -12.55896 -12.30662 -12.02838 -11.68963 -11.34635 -11.12042 -10.90282 -10.86396 -10.54134 -10.47882 -10.07379 -9.96061 -9.81942 -9.53823 -8.85449 -8.65706 -8.29080 -8.25942 -7.88365 -6.33955 -4.37182 0.66573 1.92558 2.01982 2.02832 2.05940 2.27385 2.69492 3.08361 3.14333 3.19331 3.64494 3.83637 4.15093 4.31068 4.46739 4.69394 4.72700 4.90385 5.06522 5.11543 5.34709 5.47039 5.50011 5.54812 5.58136 5.65245 5.70978 5.75040 5.80817 5.96044 6.06423 6.15079 6.16772 6.20460 6.24080 6.40471 6.64563 6.70804 6.76934 7.07167 7.14899 7.28644 7.37647 7.66017 7.98139 8.27884 8.32166 8.79550 9.26224 10.78063 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.003576 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.029806 B = 7828.015638 C = 9425.776824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.081 3.919 3 Si 0.862 3.138 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.525 4.525 8 H 0.084 0.916 9 C 0.216 3.784 10 H 0.035 0.965 11 O -0.387 6.387 12 C 0.146 3.854 13 C 0.040 3.960 14 C -0.161 4.161 15 C 0.012 3.988 16 C 0.058 3.942 17 C -0.170 4.170 18 C -0.214 4.214 19 C -0.022 4.022 20 O -0.157 6.157 21 O 0.119 5.881 22 N -0.356 5.356 23 C -0.033 4.033 24 C -0.100 4.100 25 C -0.126 4.126 26 C -0.145 4.145 27 C -0.124 4.124 28 C -0.128 4.128 29 H 0.269 0.731 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.182 0.818 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.211 0.789 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.820 -10.603 -6.827 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.124 4.124 3 Si 0.689 3.311 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.102 0.898 9 C 0.160 3.840 10 H 0.052 0.948 11 O -0.307 6.307 12 C 0.068 3.932 13 C -0.117 4.117 14 C -0.182 4.182 15 C -0.052 4.052 16 C 0.007 3.993 17 C -0.190 4.190 18 C -0.233 4.233 19 C -0.091 4.091 20 O -0.053 6.053 21 O 0.048 5.952 22 N -0.060 5.060 23 C -0.034 4.034 24 C -0.118 4.118 25 C -0.144 4.144 26 C -0.163 4.163 27 C -0.142 4.142 28 C -0.146 4.146 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.200 0.800 33 H 0.175 0.825 34 H 0.172 0.828 35 H 0.227 0.773 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.501 -9.506 -7.147 17.254 hybrid contribution 0.151 0.531 0.493 0.740 sum 12.652 -8.975 -6.654 16.879 Atomic orbital electron populations 1.69876 1.06251 1.27538 1.47709 1.25099 0.94825 0.98864 0.93647 0.87114 0.80614 0.84039 0.79357 1.19547 1.20604 1.18453 1.21262 0.88524 0.95412 1.50962 0.89799 1.19078 0.94658 0.89468 0.80751 0.94767 1.87771 1.90087 1.37616 1.15190 1.20162 1.00523 0.90129 0.82380 1.23355 1.00782 0.95018 0.92516 1.22717 1.03062 0.94912 0.97535 1.20564 1.06994 0.87067 0.90546 1.18161 1.08145 0.84064 0.88954 1.21939 1.04222 0.96219 0.96619 1.21787 1.08067 0.95436 0.98048 1.24294 1.02925 0.91373 0.90511 1.84079 1.67763 1.15539 1.37877 1.84960 1.64509 1.11302 1.34392 1.73751 1.18134 1.07850 1.06259 1.20117 0.93034 0.93665 0.96559 1.20933 0.98631 0.95155 0.97115 1.21056 0.99946 0.98959 0.94484 1.20905 1.02748 0.93650 0.99045 1.20937 1.00691 0.95175 0.97360 1.20993 0.99635 0.99627 0.94343 0.92046 0.90274 0.92236 0.80030 0.82453 0.82754 0.77280 0.86012 0.86999 0.87185 0.86992 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.96 55.43 0.77 -24.76 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.86 19.93 26.95 -169.99 -4.58 15.35 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.26 -5.60 5.42 56.52 0.31 -5.30 16 7 C -0.52 -14.12 9.17 -34.44 -0.32 -14.43 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.22 4.97 2.26 -29.03 -0.07 4.90 16 10 H 0.03 0.78 4.33 -51.93 -0.22 0.56 16 11 O -0.39 -8.33 8.69 -35.23 -0.31 -8.63 16 12 C 0.15 2.87 6.36 36.00 0.23 3.10 16 13 C 0.04 0.72 7.26 -82.25 -0.60 0.13 16 14 C -0.16 -2.65 10.49 -38.97 -0.41 -3.06 16 15 C 0.01 0.18 7.31 -36.39 -0.27 -0.09 16 16 C 0.06 0.74 7.17 -36.72 -0.26 0.48 16 17 C -0.17 -1.78 10.86 -39.34 -0.43 -2.20 16 18 C -0.21 -1.78 10.88 -39.84 -0.43 -2.22 16 19 C -0.02 -0.19 12.08 29.55 0.36 0.17 16 20 O -0.16 -1.88 10.67 4.60 0.05 -1.84 16 21 O 0.12 1.85 11.23 15.59 0.18 2.03 16 22 N -0.36 -6.26 12.05 33.52 0.40 -5.86 16 23 C -0.03 -0.71 4.97 -104.63 -0.52 -1.23 16 24 C -0.10 -1.96 9.35 -39.58 -0.37 -2.33 16 25 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 26 C -0.15 -2.32 10.05 -39.58 -0.40 -2.71 16 27 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 28 C -0.13 -2.52 9.67 -39.59 -0.38 -2.90 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.18 2.85 8.04 -52.49 -0.42 2.43 16 33 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.12 2.36 7.71 -52.49 -0.40 1.95 16 37 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.12 2.24 6.69 -52.48 -0.35 1.89 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -30.49 354.33 -7.34 -37.83 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.44 Total: 5.85 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -4.75 Total: -25.30 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 1.18 Total: -30.62 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.08 Total: -8.44 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.58 Total: 15.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.49 -7.34 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222714244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.716 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds