Wall clock time and date at job start Tue Mar 31 2020 14:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48493 * 109.47446 * 265.22389 * 3 2 1 5 5 H 1.48501 * 109.46986 * 25.22515 * 3 2 1 6 6 H 1.48497 * 109.47163 * 145.22030 * 3 2 1 7 7 C 1.37875 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00329 * 354.55426 * 7 2 1 9 9 C 1.50703 * 120.00054 * 174.55781 * 7 2 1 10 10 H 1.09000 * 109.46840 * 356.08116 * 9 7 2 11 11 O 1.42897 * 109.47167 * 236.07946 * 9 7 2 12 12 C 1.42904 * 113.99978 * 89.99815 * 11 9 7 13 13 C 1.50697 * 109.47219 * 179.97438 * 12 11 9 14 14 C 1.40797 * 126.66904 * 359.71378 * 13 12 11 15 15 C 1.37268 * 103.86403 * 179.91299 * 14 13 12 16 16 C 1.47000 * 126.97064 * 180.13232 * 15 14 13 17 17 C 1.36328 * 125.96160 * 180.27779 * 16 15 14 18 18 C 1.40705 * 106.71851 * 179.97438 * 17 16 15 19 19 C 1.34895 * 107.07980 * 0.02562 * 18 17 16 20 20 O 1.34219 * 108.72726 * 359.75256 * 19 18 17 21 21 O 1.34628 * 106.05963 * 0.33950 * 15 14 13 22 22 N 1.20891 * 111.40108 * 359.77427 * 21 15 14 23 23 C 1.50699 * 109.46999 * 116.07935 * 9 7 2 24 24 C 1.38236 * 120.00018 * 82.41225 * 23 9 7 25 25 C 1.38236 * 120.00310 * 179.80799 * 24 23 9 26 26 C 1.38234 * 119.99584 * 0.39339 * 25 24 23 27 27 C 1.38240 * 120.00226 * 359.85853 * 26 25 24 28 28 C 1.38232 * 120.00215 * 262.67797 * 23 9 7 29 29 H 0.96992 * 120.00330 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47072 * 300.00294 * 12 11 9 31 31 H 1.08998 * 109.46898 * 59.99927 * 12 11 9 32 32 H 1.07996 * 128.07369 * 0.03701 * 14 13 12 33 33 H 1.07996 * 126.64864 * 359.95839 * 17 16 15 34 34 H 1.08001 * 126.46558 * 179.97438 * 18 17 16 35 35 H 1.08001 * 125.63256 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.99810 * 359.97438 * 24 23 9 37 37 H 1.07997 * 120.00108 * 180.22721 * 25 24 23 38 38 H 1.07999 * 119.99981 * 179.83107 * 26 25 24 39 39 H 1.07998 * 120.00078 * 179.97438 * 27 26 25 40 40 H 1.08004 * 120.00006 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5975 1.9882 -1.3951 5 1 1.3996 2.6797 0.5967 6 1 3.4924 1.4715 0.7986 7 6 2.0045 -1.1940 -0.0005 8 1 1.4683 -2.1273 0.0878 9 6 3.5065 -1.1968 -0.1243 10 1 3.8607 -0.1767 -0.2722 11 8 3.8909 -2.0013 -1.2411 12 6 3.9852 -1.2806 -2.4715 13 6 4.3956 -2.2216 -3.5747 14 6 4.6596 -3.5990 -3.4501 15 6 4.9857 -3.9880 -4.7255 16 6 5.3512 -5.3403 -5.1710 17 6 5.6770 -5.7031 -6.4442 18 6 5.9545 -7.0821 -6.4136 19 6 5.7867 -7.4919 -5.1394 20 8 5.4276 -6.4371 -4.3913 21 8 4.9075 -2.8789 -5.4846 22 7 4.5806 -1.9175 -4.8287 23 6 4.1131 -1.7618 1.1342 24 6 4.2060 -3.1307 1.3026 25 6 4.7661 -3.6489 2.4553 26 6 5.2259 -2.7982 3.4431 27 6 5.1283 -1.4293 3.2770 28 6 4.5717 -0.9112 2.1226 29 1 -0.4850 0.8399 0.0004 30 1 3.0169 -0.8407 -2.7100 31 1 4.7291 -0.4900 -2.3733 32 1 4.6141 -4.2079 -2.5594 33 1 5.7145 -5.0572 -7.3089 34 1 6.2460 -7.6969 -7.2524 35 1 5.9236 -8.5011 -4.7799 36 1 3.8435 -3.7953 0.5324 37 1 4.8420 -4.7183 2.5852 38 1 5.6610 -3.2031 4.3449 39 1 5.4871 -0.7647 4.0490 40 1 4.4956 0.1583 1.9928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222714244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:40 Heat of formation + Delta-G solvation = 50.650590 kcal Electronic energy + Delta-G solvation = -26073.600097 eV Core-core repulsion = 22209.440473 eV Total energy + Delta-G solvation = -3864.159624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.11439 -43.53969 -40.27531 -38.63694 -35.69238 -34.71670 -34.39887 -33.65145 -32.72085 -31.65191 -29.77768 -29.22281 -28.22500 -24.85942 -24.32780 -23.76289 -23.28089 -22.36911 -21.82094 -21.12654 -19.55573 -19.26648 -18.93811 -17.88367 -17.69398 -17.30000 -17.04937 -16.62359 -16.43059 -15.96256 -15.81399 -15.32610 -15.00141 -14.92404 -14.73635 -14.18588 -13.96024 -13.88342 -13.77796 -13.57514 -13.37018 -13.31932 -12.93073 -12.78659 -12.53715 -12.32961 -11.96938 -11.82450 -11.60967 -11.39415 -11.25615 -10.88239 -10.86307 -10.35087 -9.69111 -9.42560 -9.19547 -8.44606 -6.53602 -0.38654 0.60156 0.64586 0.79998 1.04943 1.24250 1.24869 1.25540 1.35033 1.76179 2.19148 2.27300 2.72772 2.91408 3.09331 3.17633 3.50385 3.82328 3.98690 4.05523 4.06881 4.17313 4.21369 4.23276 4.28605 4.35101 4.39371 4.49304 4.58586 4.76859 4.84066 4.85357 4.87863 4.95650 5.00768 5.21050 5.29367 5.33004 5.49563 5.69395 5.72838 5.85872 5.99234 6.01737 6.25817 6.41476 6.60368 6.99468 7.15187 8.71763 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.003576 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.029806 B = 7828.015638 C = 9425.776824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.921 3.079 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.233 1.233 7 C -0.530 4.530 8 H 0.033 0.967 9 C 0.223 3.777 10 H 0.038 0.962 11 O -0.389 6.389 12 C 0.145 3.855 13 C 0.023 3.977 14 C -0.188 4.188 15 C 0.038 3.962 16 C 0.007 3.993 17 C -0.151 4.151 18 C -0.221 4.221 19 C -0.005 4.005 20 O -0.179 6.179 21 O 0.128 5.872 22 N -0.371 5.371 23 C -0.068 4.068 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.134 4.134 27 C -0.120 4.120 28 C -0.146 4.146 29 H 0.272 0.728 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.181 0.819 33 H 0.172 0.828 34 H 0.188 0.812 35 H 0.253 0.747 36 H 0.107 0.893 37 H 0.143 0.857 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.988 -12.080 -6.464 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.157 1.157 7 C -0.568 4.568 8 H 0.051 0.949 9 C 0.167 3.833 10 H 0.056 0.944 11 O -0.309 6.309 12 C 0.068 3.932 13 C -0.133 4.133 14 C -0.209 4.209 15 C -0.025 4.025 16 C -0.044 4.044 17 C -0.171 4.171 18 C -0.239 4.239 19 C -0.073 4.073 20 O -0.075 6.075 21 O 0.057 5.943 22 N -0.075 5.075 23 C -0.068 4.068 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.152 4.152 27 C -0.138 4.138 28 C -0.164 4.164 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.198 0.802 33 H 0.190 0.810 34 H 0.205 0.795 35 H 0.269 0.731 36 H 0.126 0.874 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.688 -10.985 -6.786 20.318 hybrid contribution -0.757 0.650 0.296 1.041 sum 14.931 -10.334 -6.490 19.284 Atomic orbital electron populations 1.70026 1.08207 1.28636 1.50005 1.25931 0.95532 1.02738 0.93069 0.86166 0.80253 0.78982 0.80310 1.18475 1.20178 1.15693 1.21363 0.90949 0.93561 1.50886 0.94891 1.18905 0.92186 0.90123 0.82071 0.94389 1.87747 1.89761 1.37753 1.15624 1.20149 0.99899 0.90947 0.82240 1.23170 1.02036 0.95594 0.92468 1.22665 1.05440 0.94312 0.98509 1.20826 1.04291 0.87801 0.89624 1.18087 1.12528 0.83592 0.90147 1.22354 1.01180 0.97649 0.95897 1.22209 1.07954 0.94574 0.99194 1.25326 0.99626 0.91879 0.90489 1.84076 1.68383 1.16106 1.38925 1.84908 1.64016 1.11365 1.33991 1.73714 1.19060 1.08739 1.05954 1.20099 0.95562 0.94876 0.96299 1.20981 0.99915 0.94510 0.98438 1.21415 0.98483 1.00929 0.93324 1.21418 1.00826 0.93146 0.99795 1.21358 0.99196 0.96416 0.96828 1.21145 1.00589 0.99467 0.95195 0.91914 0.92541 0.90669 0.80195 0.81013 0.79489 0.73105 0.87437 0.83908 0.82946 0.83486 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.96 21.45 0.30 -56.89 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.92 41.89 26.95 68.60 1.85 43.74 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.23 -9.56 5.42 99.48 0.54 -9.02 16 7 C -0.53 -30.46 9.17 25.60 0.23 -30.22 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 9 C 0.22 10.72 2.26 29.10 0.07 10.78 16 10 H 0.04 1.77 4.33 -2.39 -0.01 1.76 16 11 O -0.39 -17.81 8.69 -148.98 -1.29 -19.11 16 12 C 0.15 6.06 6.36 71.24 0.45 6.52 16 13 C 0.02 0.88 7.26 43.40 0.32 1.20 16 14 C -0.19 -6.53 10.49 22.67 0.24 -6.29 16 15 C 0.04 1.17 7.31 24.34 0.18 1.35 16 16 C 0.01 0.16 7.17 24.12 0.17 0.34 16 17 C -0.15 -2.83 10.86 22.43 0.24 -2.58 16 18 C -0.22 -2.89 10.88 22.10 0.24 -2.65 16 19 C -0.01 -0.07 12.08 67.05 0.81 0.74 16 20 O -0.18 -4.07 10.67 -6.47 -0.07 -4.14 16 21 O 0.13 4.06 11.23 65.95 0.74 4.80 16 22 N -0.37 -13.50 12.05 -48.67 -0.59 -14.09 16 23 C -0.07 -2.96 4.97 -19.87 -0.10 -3.06 16 24 C -0.12 -4.79 9.35 22.27 0.21 -4.58 16 25 C -0.12 -3.89 10.05 22.27 0.22 -3.67 16 26 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 27 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 28 C -0.15 -5.60 9.67 22.27 0.22 -5.39 16 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.08 2.84 8.08 -2.39 -0.02 2.82 16 32 H 0.18 6.12 8.04 -2.91 -0.02 6.10 16 33 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.25 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.11 4.44 7.71 -2.91 -0.02 4.42 16 37 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 40 H 0.11 4.29 6.69 -2.91 -0.02 4.27 16 Total: -1.00 -72.40 354.33 6.25 -66.15 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.90 Total: 22.00 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 4.41 Total: -42.47 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -0.29 Total: -70.98 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.62 Total: -18.45 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.85 Total: 43.74 kcal Total: -72.40 6.25 -66.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222714244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.800 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds