Wall clock time and date at job start Tue Mar 31 2020 14:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86806 * 119.99603 * 2 1 4 4 H 1.48509 * 109.46888 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47389 * 299.99597 * 3 2 1 6 6 H 1.48498 * 109.47122 * 59.99875 * 3 2 1 7 7 C 1.39930 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00637 * 196.42169 * 7 2 1 9 9 C 1.41160 * 119.99766 * 16.42745 * 7 2 1 10 10 C 1.40729 * 120.29094 * 25.61383 * 9 7 2 11 11 C 1.36485 * 119.92769 * 180.32350 * 10 9 7 12 12 C 1.38821 * 120.54000 * 359.68092 * 11 10 9 13 13 C 1.38312 * 120.58812 * 0.02562 * 12 11 10 14 14 C 1.38440 * 120.05357 * 359.97438 * 13 12 11 15 15 O 1.35642 * 120.26668 * 180.02562 * 14 13 12 16 16 C 1.42900 * 116.99957 * 354.58336 * 15 14 13 17 17 H 1.09000 * 110.88595 * 326.20544 * 16 15 14 18 18 C 1.54500 * 110.90530 * 89.74755 * 16 15 14 19 19 C 1.51370 * 105.21264 * 144.45947 * 18 16 15 20 20 C 1.38491 * 130.39134 * 162.87685 * 19 18 16 21 21 C 1.38102 * 120.22035 * 179.97438 * 20 19 18 22 22 C 1.38253 * 119.93106 * 0.02562 * 21 20 19 23 23 N 1.48018 * 120.02857 * 180.02562 * 22 21 20 24 24 O 1.21794 * 120.00354 * 0.02562 * 23 22 21 25 25 O 1.21805 * 119.99759 * 180.02562 * 23 22 21 26 26 C 1.38100 * 119.93470 * 359.97438 * 22 21 20 27 27 C 1.38224 * 109.76007 * 342.87252 * 19 18 16 28 28 C 1.51370 * 109.75597 * 0.02562 * 27 19 18 29 29 H 0.97002 * 120.00650 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03040 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.73335 * 179.70359 * 11 10 9 32 32 H 1.07997 * 119.70385 * 180.02562 * 12 11 10 33 33 H 1.08005 * 119.97212 * 180.02562 * 13 12 11 34 34 H 1.08997 * 110.22030 * 25.55726 * 18 16 15 35 35 H 1.08990 * 110.42539 * 263.47098 * 18 16 15 36 36 H 1.08008 * 119.89108 * 359.97438 * 20 19 18 37 37 H 1.08000 * 120.03335 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.88686 * 180.02562 * 26 22 21 39 39 H 1.08999 * 110.30170 * 136.10480 * 28 27 19 40 40 H 1.09004 * 110.30145 * 258.15534 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 3.7026 1.3465 0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0083 -1.2118 0.0005 8 1 3.0552 -1.2308 0.2649 9 6 1.3458 -2.4095 -0.3447 10 6 0.2117 -2.3787 -1.1773 11 6 -0.4271 -3.5406 -1.5010 12 6 0.0363 -4.7578 -1.0206 13 6 1.1524 -4.8140 -0.2057 14 6 1.8192 -3.6505 0.1380 15 8 2.9145 -3.7006 0.9365 16 6 3.2588 -4.9738 1.4864 17 1 2.3648 -5.5618 1.6945 18 6 4.2132 -5.7413 0.5446 19 6 5.1520 -6.4972 1.4603 20 6 5.9892 -7.5693 1.2004 21 6 6.7678 -8.1035 2.2082 22 6 6.7116 -7.5672 3.4812 23 7 7.5455 -8.1377 4.5629 24 8 8.2821 -9.0797 4.3315 25 8 7.4952 -7.6650 5.6843 26 6 5.8773 -6.4981 3.7423 27 6 5.0958 -5.9609 2.7330 28 6 4.1149 -4.8084 2.7598 29 1 -0.4851 0.8400 -0.0004 30 1 -0.1555 -1.4362 -1.5558 31 1 -1.3000 -3.5129 -2.1364 32 1 -0.4793 -5.6690 -1.2856 33 1 1.5046 -5.7665 0.1621 34 1 4.7725 -5.0418 -0.0766 35 1 3.6530 -6.4367 -0.0803 36 1 6.0334 -7.9891 0.2062 37 1 7.4193 -8.9399 2.0022 38 1 5.8343 -6.0795 4.7370 39 1 3.4866 -4.8670 3.6485 40 1 4.6477 -3.8577 2.7360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230272768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:58 Heat of formation + Delta-G solvation = 4.689438 kcal Electronic energy + Delta-G solvation = -25937.914392 eV Core-core repulsion = 22071.761743 eV Total energy + Delta-G solvation = -3866.152649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35436 -40.67986 -38.81450 -36.75403 -36.68667 -34.85495 -33.69618 -32.25267 -30.15947 -29.41558 -28.75235 -27.88837 -25.80045 -25.22013 -23.24748 -21.85892 -21.61913 -20.85003 -20.15733 -18.94955 -18.79138 -17.73285 -17.67701 -16.93367 -16.31471 -16.03278 -15.37909 -14.70725 -14.58876 -14.32144 -14.27827 -14.01707 -13.58817 -13.28556 -12.94053 -12.78721 -12.52099 -12.40435 -12.06525 -11.77072 -11.65413 -11.52182 -11.39470 -11.32182 -11.30821 -11.20192 -10.99262 -10.83204 -10.52612 -10.08694 -9.83584 -9.62060 -9.53352 -9.26045 -9.20944 -7.58655 -7.14245 -6.78655 -4.34488 -0.35720 0.66407 1.15165 1.21329 2.66307 2.85171 2.98203 3.04918 3.10110 3.13073 3.70497 3.89921 3.91845 4.22358 4.28005 4.53343 4.57216 4.62026 4.71880 4.97998 5.08024 5.19572 5.40886 5.46194 5.51698 5.56543 5.58616 5.69296 5.77782 5.87771 5.95101 5.99436 6.07847 6.21551 6.28795 6.38435 6.83998 7.01545 7.19795 7.25911 7.47339 7.61880 7.66263 7.96862 8.11634 8.28597 8.60575 8.76987 8.95161 10.13797 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.002771 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.809728 B =10100.973451 C =11215.796858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.446 4.446 8 H 0.082 0.918 9 C 0.101 3.899 10 C -0.145 4.145 11 C -0.124 4.124 12 C -0.216 4.216 13 C -0.174 4.174 14 C 0.003 3.997 15 O -0.290 6.290 16 C 0.092 3.908 17 H 0.084 0.916 18 C -0.116 4.116 19 C -0.031 4.031 20 C -0.108 4.108 21 C -0.056 4.056 22 C -0.050 4.050 23 N 0.033 4.967 24 O -0.166 6.166 25 O -0.164 6.164 26 C -0.042 4.042 27 C -0.088 4.088 28 C -0.079 4.079 29 H 0.280 0.720 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.229 -10.259 2.289 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.475 4.475 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.165 4.165 11 C -0.142 4.142 12 C -0.236 4.236 13 C -0.193 4.193 14 C -0.041 4.041 15 O -0.205 6.205 16 C 0.034 3.966 17 H 0.101 0.899 18 C -0.153 4.153 19 C -0.031 4.031 20 C -0.126 4.126 21 C -0.075 4.075 22 C -0.134 4.134 23 N 0.551 4.449 24 O -0.381 6.381 25 O -0.379 6.379 26 C -0.061 4.061 27 C -0.089 4.089 28 C -0.116 4.116 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.109 0.891 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.756 -9.653 1.845 12.520 hybrid contribution 0.427 0.246 0.319 0.587 sum 8.183 -9.407 2.164 12.655 Atomic orbital electron populations 1.69828 1.07534 1.29151 1.35715 1.25901 0.94733 1.01325 0.92441 0.86258 0.81026 0.80921 0.78539 1.18372 1.19756 1.20005 1.19452 0.97847 0.90546 1.39684 0.89951 1.17061 0.92307 0.89649 0.91128 1.20908 0.98310 0.97287 0.99988 1.20407 0.99375 0.93279 1.01168 1.20136 1.00300 0.96365 1.06764 1.20601 0.99523 0.95291 1.03867 1.19108 0.91130 0.94575 0.99289 1.86017 1.44205 1.27748 1.62520 1.22623 0.96361 0.86349 0.91296 0.89860 1.21911 0.96359 0.99033 0.97991 1.21125 0.93722 0.92744 0.95522 1.20673 0.96012 0.96216 0.99714 1.20912 0.97747 0.99172 0.89629 1.20853 1.01892 1.02114 0.88493 1.43585 0.99717 0.99595 1.01979 1.94523 1.35936 1.18939 1.88662 1.94544 1.71999 1.63298 1.08073 1.20372 0.92164 0.92452 1.01131 1.20486 0.97779 0.97847 0.92756 1.21088 0.95487 0.96343 0.98655 0.90905 0.85810 0.89299 0.89355 0.88750 0.87532 0.89142 0.83565 0.82871 0.83010 0.89067 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.88 10.95 55.55 0.61 -19.27 16 2 C 0.07 1.77 5.16 -17.33 -0.09 1.68 16 3 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.45 -11.39 8.72 -37.84 -0.33 -11.72 16 8 H 0.08 2.08 7.66 -52.49 -0.40 1.68 16 9 C 0.10 2.57 5.58 -106.68 -0.59 1.98 16 10 C -0.15 -3.60 8.63 -39.27 -0.34 -3.94 16 11 C -0.12 -2.76 9.97 -40.00 -0.40 -3.16 16 12 C -0.22 -4.53 10.04 -39.34 -0.39 -4.93 16 13 C -0.17 -3.56 8.90 -39.48 -0.35 -3.92 16 14 C 0.00 0.06 6.71 -38.34 -0.26 -0.20 16 15 O -0.29 -5.81 9.17 -18.63 -0.17 -5.98 16 16 C 0.09 1.34 2.86 -25.25 -0.07 1.27 16 17 H 0.08 1.21 6.33 -51.93 -0.33 0.88 16 18 C -0.12 -1.41 6.30 -26.77 -0.17 -1.57 16 19 C -0.03 -0.33 6.14 -104.20 -0.64 -0.97 16 20 C -0.11 -0.95 10.04 -39.54 -0.40 -1.35 16 21 C -0.06 -0.52 9.55 -39.63 -0.38 -0.90 16 22 C -0.05 -0.57 6.85 -79.99 -0.55 -1.12 16 23 N 0.03 0.43 4.45 33.94 0.15 0.58 16 24 O -0.17 -2.22 18.45 -29.46 -0.54 -2.76 16 25 O -0.16 -2.26 18.45 -29.46 -0.54 -2.81 16 26 C -0.04 -0.45 9.55 -39.54 -0.38 -0.83 16 27 C -0.09 -0.97 6.14 -104.20 -0.64 -1.61 16 28 C -0.08 -0.96 6.51 -26.86 -0.17 -1.13 16 29 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 30 H 0.12 3.16 6.19 -52.49 -0.32 2.84 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.09 1.63 5.60 -52.48 -0.29 1.34 16 34 H 0.11 1.37 8.10 -51.93 -0.42 0.95 16 35 H 0.09 1.01 7.76 -51.93 -0.40 0.61 16 36 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.15 1.16 7.62 -52.49 -0.40 0.76 16 38 H 0.15 1.46 7.60 -52.49 -0.40 1.07 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.11 1.32 8.10 -51.93 -0.42 0.90 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -27.72 345.59 -10.69 -38.40 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.22 Total: 5.87 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -6.15 Total: -32.41 kcal Atomic # 7 Polarization: -19.45 SS G_CDS: 0.76 Total: -18.69 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.26 Total: -11.55 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.72 -10.69 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230272768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.094 kcal (2) G-P(sol) polarization free energy of solvation -27.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds