Wall clock time and date at job start Tue Mar 31 2020 14:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86806 * 119.99603 * 2 1 4 4 H 1.48509 * 109.46888 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47389 * 299.99597 * 3 2 1 6 6 H 1.48498 * 109.47122 * 59.99875 * 3 2 1 7 7 C 1.39930 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00637 * 196.42169 * 7 2 1 9 9 C 1.41160 * 119.99766 * 16.42745 * 7 2 1 10 10 C 1.40729 * 120.29094 * 25.61383 * 9 7 2 11 11 C 1.36485 * 119.92769 * 180.32350 * 10 9 7 12 12 C 1.38821 * 120.54000 * 359.68092 * 11 10 9 13 13 C 1.38312 * 120.58812 * 0.02562 * 12 11 10 14 14 C 1.38440 * 120.05357 * 359.97438 * 13 12 11 15 15 O 1.35642 * 120.26668 * 180.02562 * 14 13 12 16 16 C 1.42900 * 116.99957 * 354.58336 * 15 14 13 17 17 H 1.09000 * 110.88595 * 326.20544 * 16 15 14 18 18 C 1.54500 * 110.90530 * 89.74755 * 16 15 14 19 19 C 1.51370 * 105.21264 * 144.45947 * 18 16 15 20 20 C 1.38491 * 130.39134 * 162.87685 * 19 18 16 21 21 C 1.38102 * 120.22035 * 179.97438 * 20 19 18 22 22 C 1.38253 * 119.93106 * 0.02562 * 21 20 19 23 23 N 1.48018 * 120.02857 * 180.02562 * 22 21 20 24 24 O 1.21794 * 120.00354 * 0.02562 * 23 22 21 25 25 O 1.21805 * 119.99759 * 180.02562 * 23 22 21 26 26 C 1.38100 * 119.93470 * 359.97438 * 22 21 20 27 27 C 1.38224 * 109.76007 * 342.87252 * 19 18 16 28 28 C 1.51370 * 109.75597 * 0.02562 * 27 19 18 29 29 H 0.97002 * 120.00650 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03040 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.73335 * 179.70359 * 11 10 9 32 32 H 1.07997 * 119.70385 * 180.02562 * 12 11 10 33 33 H 1.08005 * 119.97212 * 180.02562 * 13 12 11 34 34 H 1.08997 * 110.22030 * 25.55726 * 18 16 15 35 35 H 1.08990 * 110.42539 * 263.47098 * 18 16 15 36 36 H 1.08008 * 119.89108 * 359.97438 * 20 19 18 37 37 H 1.08000 * 120.03335 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.88686 * 180.02562 * 26 22 21 39 39 H 1.08999 * 110.30170 * 136.10480 * 28 27 19 40 40 H 1.09004 * 110.30145 * 258.15534 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 3.7026 1.3465 0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0083 -1.2118 0.0005 8 1 3.0552 -1.2308 0.2649 9 6 1.3458 -2.4095 -0.3447 10 6 0.2117 -2.3787 -1.1773 11 6 -0.4271 -3.5406 -1.5010 12 6 0.0363 -4.7578 -1.0206 13 6 1.1524 -4.8140 -0.2057 14 6 1.8192 -3.6505 0.1380 15 8 2.9145 -3.7006 0.9365 16 6 3.2588 -4.9738 1.4864 17 1 2.3648 -5.5618 1.6945 18 6 4.2132 -5.7413 0.5446 19 6 5.1520 -6.4972 1.4603 20 6 5.9892 -7.5693 1.2004 21 6 6.7678 -8.1035 2.2082 22 6 6.7116 -7.5672 3.4812 23 7 7.5455 -8.1377 4.5629 24 8 8.2821 -9.0797 4.3315 25 8 7.4952 -7.6650 5.6843 26 6 5.8773 -6.4981 3.7423 27 6 5.0958 -5.9609 2.7330 28 6 4.1149 -4.8084 2.7598 29 1 -0.4851 0.8400 -0.0004 30 1 -0.1555 -1.4362 -1.5558 31 1 -1.3000 -3.5129 -2.1364 32 1 -0.4793 -5.6690 -1.2856 33 1 1.5046 -5.7665 0.1621 34 1 4.7725 -5.0418 -0.0766 35 1 3.6530 -6.4367 -0.0803 36 1 6.0334 -7.9891 0.2062 37 1 7.4193 -8.9399 2.0022 38 1 5.8343 -6.0795 4.7370 39 1 3.4866 -4.8670 3.6485 40 1 4.6477 -3.8577 2.7360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230272768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:57 Heat of formation + Delta-G solvation = -6.260974 kcal Electronic energy + Delta-G solvation = -25938.389238 eV Core-core repulsion = 22071.761743 eV Total energy + Delta-G solvation = -3866.627494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.31308 -41.66723 -40.26402 -38.17845 -37.72339 -36.01699 -35.47319 -33.07621 -31.72459 -30.75970 -30.22478 -28.89553 -27.05091 -26.76039 -24.29045 -23.08237 -22.64282 -22.39631 -21.52636 -19.90977 -19.76178 -19.37491 -18.66474 -18.51003 -17.36592 -17.00717 -16.90979 -16.07982 -15.97188 -15.47519 -15.41851 -15.21716 -14.71914 -14.50303 -14.42659 -13.99540 -13.90632 -13.62221 -13.33708 -13.09125 -12.94068 -12.79157 -12.76237 -12.53884 -12.40344 -12.34239 -12.27531 -12.22854 -12.05504 -11.61142 -11.48106 -11.19269 -11.03846 -10.40776 -10.09632 -9.36795 -8.87014 -8.55328 -6.21190 -1.29210 -0.11263 0.22792 0.30520 0.94685 1.11036 1.39004 1.49830 1.53099 2.16786 2.22864 2.48394 2.77030 3.01091 3.27108 3.48172 3.60371 3.72751 3.74213 3.87046 4.02140 4.12934 4.29682 4.39038 4.50020 4.56483 4.58488 4.62695 4.66764 4.71025 4.77406 4.90556 4.92639 5.09115 5.12915 5.19852 5.23447 5.42211 5.45710 5.50085 5.87802 5.91461 6.19243 6.32410 6.44610 6.53270 6.82196 6.94901 7.24034 8.37947 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.002771 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.809728 B =10100.973451 C =11215.796858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.480 4.480 8 H 0.071 0.929 9 C 0.060 3.940 10 C -0.168 4.168 11 C -0.136 4.136 12 C -0.206 4.206 13 C -0.175 4.175 14 C 0.006 3.994 15 O -0.311 6.311 16 C 0.079 3.921 17 H 0.088 0.912 18 C -0.108 4.108 19 C -0.030 4.030 20 C -0.094 4.094 21 C -0.047 4.047 22 C -0.062 4.062 23 N 0.034 4.966 24 O -0.165 6.165 25 O -0.193 6.193 26 C -0.044 4.044 27 C -0.092 4.092 28 C -0.075 4.075 29 H 0.286 0.714 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.157 0.843 39 H 0.101 0.899 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 -12.395 1.682 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.510 4.510 8 H 0.089 0.911 9 C 0.057 3.943 10 C -0.188 4.188 11 C -0.155 4.155 12 C -0.225 4.225 13 C -0.193 4.193 14 C -0.039 4.039 15 O -0.227 6.227 16 C 0.021 3.979 17 H 0.106 0.894 18 C -0.144 4.144 19 C -0.031 4.031 20 C -0.112 4.112 21 C -0.065 4.065 22 C -0.145 4.145 23 N 0.548 4.452 24 O -0.382 6.382 25 O -0.402 6.402 26 C -0.063 4.063 27 C -0.093 4.093 28 C -0.112 4.112 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.198 0.802 37 H 0.193 0.807 38 H 0.174 0.826 39 H 0.119 0.881 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.485 -11.790 1.281 14.582 hybrid contribution 0.204 0.693 0.484 0.870 sum 8.689 -11.096 1.765 14.203 Atomic orbital electron populations 1.69878 1.08741 1.30190 1.36987 1.26643 0.95458 1.04173 0.91722 0.85246 0.79401 0.76763 0.78841 1.18492 1.18909 1.19311 1.19546 0.97567 0.91946 1.41980 0.91105 1.17437 0.93381 0.91104 0.92340 1.20869 0.99199 0.97587 1.01104 1.20682 0.99993 0.93158 1.01634 1.20608 0.99865 0.97001 1.05076 1.20973 0.98989 0.96137 1.03229 1.19222 0.91470 0.94393 0.98781 1.85980 1.43243 1.31176 1.62254 1.22959 0.97425 0.84646 0.92830 0.89413 1.21746 0.96125 0.98923 0.97640 1.21079 0.93996 0.93329 0.94679 1.20967 0.94377 0.94922 1.00953 1.21234 0.97465 0.99237 0.88613 1.21018 1.02169 1.02700 0.88653 1.43833 0.99686 0.99406 1.02225 1.94499 1.36066 1.19033 1.88650 1.94545 1.72871 1.63872 1.08947 1.20393 0.92029 0.92433 1.01400 1.20286 0.98018 0.97731 0.93286 1.21002 0.95612 0.96600 0.97971 0.90359 0.87788 0.87278 0.85884 0.85076 0.88465 0.87604 0.80242 0.80694 0.82566 0.88106 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.16 10.95 21.83 0.24 -42.92 16 2 C 0.03 1.69 5.16 85.25 0.44 2.13 16 3 Si 0.98 38.44 29.59 68.60 2.03 40.47 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.48 -25.70 8.72 23.40 0.20 -25.50 16 8 H 0.07 3.78 7.66 -2.91 -0.02 3.76 16 9 C 0.06 3.13 5.58 -21.20 -0.12 3.02 16 10 C -0.17 -8.57 8.63 22.47 0.19 -8.38 16 11 C -0.14 -6.01 9.97 22.00 0.22 -5.79 16 12 C -0.21 -8.13 10.04 22.43 0.23 -7.90 16 13 C -0.17 -6.78 8.90 22.34 0.20 -6.59 16 14 C 0.01 0.26 6.71 23.08 0.15 0.41 16 15 O -0.31 -12.54 9.17 -89.56 -0.82 -13.36 16 16 C 0.08 2.19 2.86 31.56 0.09 2.28 16 17 H 0.09 2.36 6.33 -2.39 -0.02 2.34 16 18 C -0.11 -2.35 6.30 30.57 0.19 -2.15 16 19 C -0.03 -0.56 6.14 -19.59 -0.12 -0.68 16 20 C -0.09 -1.27 10.04 22.30 0.22 -1.05 16 21 C -0.05 -0.71 9.55 22.24 0.21 -0.50 16 22 C -0.06 -1.27 6.85 36.35 0.25 -1.02 16 23 N 0.03 0.83 4.45 -46.53 -0.21 0.62 16 24 O -0.17 -4.15 18.45 18.89 0.35 -3.80 16 25 O -0.19 -5.27 18.45 18.88 0.35 -4.92 16 26 C -0.04 -0.87 9.55 22.30 0.21 -0.66 16 27 C -0.09 -1.88 6.14 -19.59 -0.12 -2.00 16 28 C -0.08 -1.76 6.51 30.51 0.20 -1.56 16 29 H 0.29 13.43 8.30 -92.71 -0.77 12.67 16 30 H 0.10 5.61 6.19 -2.91 -0.02 5.59 16 31 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 32 H 0.12 3.99 8.06 -2.91 -0.02 3.96 16 33 H 0.13 4.04 5.60 -2.91 -0.02 4.03 16 34 H 0.10 2.35 8.10 -2.39 -0.02 2.33 16 35 H 0.11 1.98 7.76 -2.39 -0.02 1.96 16 36 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.18 1.93 7.62 -2.91 -0.02 1.90 16 38 H 0.16 2.91 7.60 -2.91 -0.02 2.88 16 39 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.10 2.42 8.10 -2.39 -0.02 2.40 16 Total: -1.00 -62.31 345.59 5.68 -56.63 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 1.09 Total: 23.21 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 2.66 Total: -55.93 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.03 Total: -42.29 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.12 Total: -22.08 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -62.31 5.68 -56.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230272768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.371 kcal (2) G-P(sol) polarization free energy of solvation -62.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds