Wall clock time and date at job start Tue Mar 31 2020 14:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21231 * 119.99632 * 2 1 4 4 N 1.34777 * 120.00210 * 179.97438 * 2 1 3 5 5 N 1.39858 * 125.52782 * 359.97438 * 4 2 1 6 6 C 1.30126 * 110.16689 * 180.02562 * 5 4 2 7 7 C 1.46168 * 107.93929 * 0.02562 * 6 5 4 8 8 C 1.39952 * 133.74727 * 179.97438 * 7 6 5 9 9 C 1.36284 * 119.94185 * 179.97438 * 8 7 6 10 10 C 1.39965 * 120.47270 * 359.97438 * 9 8 7 11 11 C 1.48314 * 119.82336 * 179.97438 * 10 9 8 12 12 C 1.39044 * 120.42316 * 310.00502 * 11 10 9 13 13 C 1.40948 * 118.12582 * 179.97438 * 12 11 10 14 14 C 1.41376 * 120.57297 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99661 * 155.74680 * 14 13 12 16 16 C 1.39890 * 120.00048 * 335.74536 * 14 13 12 17 17 N 1.30860 * 120.00039 * 343.47550 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.47554 * 16 14 13 19 19 H 1.48500 * 109.47273 * 94.73793 * 18 16 14 20 20 H 1.48498 * 109.47358 * 214.74115 * 18 16 14 21 21 H 1.48498 * 109.47120 * 334.74120 * 18 16 14 22 22 C 1.40812 * 118.85219 * 359.97438 * 13 12 11 23 23 N 1.31500 * 120.71107 * 0.02562 * 22 13 12 24 24 C 1.32159 * 122.08155 * 359.97438 * 23 22 13 25 25 F 1.35099 * 119.46580 * 180.02562 * 24 23 22 26 26 C 1.38912 * 120.34960 * 0.27615 * 10 9 8 27 27 C 1.37876 * 125.52816 * 180.02562 * 4 2 1 28 28 H 1.08995 * 109.47727 * 240.00279 * 1 2 3 29 29 H 1.08999 * 109.47196 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47019 * 119.99995 * 1 2 3 31 31 H 1.08000 * 126.02969 * 180.02562 * 6 5 4 32 32 H 1.08003 * 120.03163 * 0.02562 * 8 7 6 33 33 H 1.08000 * 119.76277 * 180.02562 * 9 8 7 34 34 H 1.08005 * 120.94424 * 359.95292 * 12 11 10 35 35 H 0.97000 * 119.99862 * 179.97438 * 17 16 14 36 36 H 1.08007 * 119.64201 * 179.72793 * 22 13 12 37 37 H 1.08003 * 120.17258 * 179.72243 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1130 1.0499 0.0000 4 7 2.1809 -1.1672 0.0005 5 7 1.6016 -2.4401 0.0016 6 6 2.5275 -3.3544 0.0024 7 6 3.8249 -2.6812 0.0025 8 6 5.1496 -3.1329 0.0036 9 6 6.1745 -2.2347 0.0028 10 6 5.9133 -0.8596 0.0003 11 6 7.0397 0.1052 0.0000 12 6 8.0749 -0.0208 0.9198 13 6 9.1212 0.9226 0.8758 14 6 10.1992 0.8437 1.7870 15 1 11.1538 1.2805 1.5332 16 6 10.0295 0.2000 3.0174 17 7 8.8252 -0.0410 3.4691 18 14 11.5218 -0.3155 4.0156 19 1 11.8427 0.7415 5.0082 20 1 11.2284 -1.5872 4.7241 21 1 12.6810 -0.5106 3.1082 22 6 9.0742 1.9449 -0.0914 23 7 8.0725 2.0210 -0.9399 24 6 7.0748 1.1544 -0.9278 25 9 6.0726 1.2822 -1.8246 26 6 4.6046 -0.3938 0.0044 27 6 3.5532 -1.3000 0.0011 28 1 -0.3634 -0.5137 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.3659 -4.4223 0.0029 32 1 5.3594 -4.1923 0.0043 33 1 7.1956 -2.5864 0.0033 34 1 8.0770 -0.8187 1.6477 35 1 8.7075 -0.4876 4.3220 36 1 9.8670 2.6771 -0.1337 37 1 4.4063 0.6679 0.0069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243481141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:36 Heat of formation + Delta-G solvation = 15.938423 kcal Electronic energy + Delta-G solvation = -26212.220400 eV Core-core repulsion = 22255.387990 eV Total energy + Delta-G solvation = -3956.832410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.51704 -42.91986 -40.51176 -40.08511 -38.37068 -36.05515 -34.26630 -33.38108 -32.26035 -32.14929 -30.12611 -29.71483 -27.43287 -25.09866 -24.65647 -24.04218 -23.21224 -22.30388 -20.65988 -19.38260 -18.63216 -18.53714 -18.11351 -17.78712 -17.41655 -16.96462 -16.68385 -16.45776 -15.99089 -15.86952 -15.18970 -15.12712 -14.96479 -14.62288 -14.33067 -14.18903 -13.95111 -13.70076 -13.60248 -13.32536 -13.30809 -13.17545 -13.02288 -12.78875 -12.53116 -12.29672 -12.13636 -11.85628 -11.52311 -11.50043 -11.26065 -10.63304 -10.37306 -9.83404 -9.44213 -9.27162 -8.81351 -6.54157 -0.62468 0.12751 0.39161 0.73352 1.02473 1.10814 1.42998 1.49140 1.59599 1.67032 2.17275 2.49996 2.66568 2.96015 3.20048 3.35767 3.43441 3.58325 3.64595 3.74740 4.07880 4.17079 4.23737 4.39636 4.46503 4.54784 4.58564 4.62723 4.77590 4.84897 4.93347 4.99618 5.09589 5.17605 5.22630 5.42687 5.56540 5.65625 5.67234 5.75353 5.85785 6.10848 6.31087 6.55491 6.60625 6.61666 7.26657 8.13251 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.003736 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.416240 B = 7493.118235 C = 8306.558167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.528 3.472 3 O -0.546 6.546 4 N -0.403 5.403 5 N -0.261 5.261 6 C 0.152 3.848 7 C -0.175 4.175 8 C -0.018 4.018 9 C -0.135 4.135 10 C 0.009 3.991 11 C -0.100 4.100 12 C -0.107 4.107 13 C 0.035 3.965 14 C -0.453 4.453 15 H 0.101 0.899 16 C 0.037 3.963 17 N -0.809 5.809 18 Si 0.993 3.007 19 H -0.264 1.264 20 H -0.263 1.263 21 H -0.251 1.251 22 C -0.003 4.003 23 N -0.504 5.504 24 C 0.129 3.871 25 F -0.150 7.150 26 C -0.128 4.128 27 C 0.087 3.913 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.270 0.730 32 H 0.193 0.807 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.298 0.702 36 H 0.159 0.841 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.135 -14.046 -0.156 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.323 3.677 3 O -0.419 6.419 4 N -0.206 5.206 5 N -0.071 5.071 6 C -0.049 4.049 7 C -0.181 4.181 8 C -0.038 4.038 9 C -0.153 4.153 10 C 0.006 3.994 11 C -0.104 4.104 12 C -0.132 4.132 13 C 0.031 3.969 14 C -0.481 4.481 15 H 0.119 0.881 16 C -0.181 4.181 17 N -0.433 5.433 18 Si 0.812 3.188 19 H -0.189 1.189 20 H -0.188 1.188 21 H -0.174 1.174 22 C -0.165 4.165 23 N -0.216 5.216 24 C -0.024 4.024 25 F -0.130 7.130 26 C -0.150 4.150 27 C -0.018 4.018 28 H 0.136 0.864 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.285 0.715 32 H 0.210 0.790 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.109 0.891 36 H 0.176 0.824 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.371 -12.429 -0.613 16.857 hybrid contribution 1.259 0.289 0.721 1.479 sum -10.112 -12.140 0.108 15.800 Atomic orbital electron populations 1.21890 0.84369 1.06755 1.07274 1.22184 0.93588 0.79608 0.72359 1.90798 1.72435 1.31239 1.47384 1.47385 1.02995 1.07016 1.63240 1.76637 1.23168 0.86670 1.20615 1.26435 0.85634 1.01692 0.91128 1.20502 0.96549 0.90357 1.10676 1.20766 0.87791 1.01928 0.93293 1.21113 1.01492 0.90353 1.02387 1.18762 0.90371 0.94336 0.95888 1.19337 0.97113 0.96155 0.97795 1.21739 0.93577 1.00157 0.97756 1.18831 0.94006 0.90759 0.93343 1.19961 0.98122 1.30686 0.99339 0.88120 1.26951 1.00335 0.92244 0.98589 1.69824 1.25232 1.28736 1.19480 0.85007 0.77299 0.78674 0.77788 1.18910 1.18752 1.17446 1.22659 0.96925 1.00079 0.96790 1.66241 1.02341 1.26612 1.26361 1.17807 0.89800 0.99269 0.95534 1.91383 1.58195 1.96186 1.67248 1.20165 0.90647 0.98344 1.05814 1.19001 0.84940 0.96607 1.01214 0.86412 0.87629 0.86388 0.71452 0.79037 0.83671 0.84116 0.89078 0.82415 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.88 71.23 0.70 -1.98 16 2 C 0.53 17.00 7.97 87.66 0.70 17.70 16 3 O -0.55 -23.12 15.80 -2.88 -0.05 -23.16 16 4 N -0.40 -12.79 3.67 -303.70 -1.11 -13.90 16 5 N -0.26 -5.94 11.84 -52.97 -0.63 -6.56 16 6 C 0.15 2.54 12.28 87.01 1.07 3.61 16 7 C -0.17 -4.52 6.36 -20.18 -0.13 -4.65 16 8 C -0.02 -0.42 10.04 22.23 0.22 -0.20 16 9 C -0.13 -4.36 9.44 22.23 0.21 -4.15 16 10 C 0.01 0.40 5.33 -20.02 -0.11 0.30 16 11 C -0.10 -4.98 5.47 -19.95 -0.11 -5.09 16 12 C -0.11 -5.37 8.26 23.13 0.19 -5.18 16 13 C 0.04 1.80 5.59 -21.21 -0.12 1.69 16 14 C -0.45 -21.49 9.08 23.44 0.21 -21.27 16 15 H 0.10 4.41 7.90 -2.91 -0.02 4.39 16 16 C 0.04 1.63 5.19 85.24 0.44 2.07 16 17 N -0.81 -37.77 10.90 21.82 0.24 -37.53 16 18 Si 0.99 32.78 29.59 68.60 2.03 34.81 16 19 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 20 H -0.26 -8.26 7.11 99.48 0.71 -7.55 16 21 H -0.25 -8.03 7.11 99.48 0.71 -7.32 16 22 C 0.00 -0.13 10.96 85.37 0.94 0.81 16 23 N -0.50 -27.09 10.33 -193.69 -2.00 -29.09 16 24 C 0.13 6.91 8.30 85.10 0.71 7.61 16 25 F -0.15 -8.04 15.91 44.97 0.72 -7.33 16 26 C -0.13 -5.65 8.36 22.57 0.19 -5.46 16 27 C 0.09 3.14 6.75 38.95 0.26 3.41 16 28 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 30 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.27 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.15 4.30 8.03 -2.91 -0.02 4.28 16 34 H 0.14 6.93 6.20 -2.91 -0.02 6.91 16 35 H 0.30 12.42 8.30 -92.71 -0.77 11.65 16 36 H 0.16 7.07 8.06 -2.91 -0.02 7.04 16 37 H 0.10 4.98 6.56 -2.91 -0.02 4.96 16 Total: -1.00 -74.68 334.18 5.71 -68.96 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 1.14 Total: 24.60 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.38 Total: -10.80 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -3.51 Total: -87.09 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.72 Total: -7.33 kcal Atomic # 14 Polarization: 32.78 SS G_CDS: 2.03 Total: 34.81 kcal Total: -74.68 5.71 -68.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243481141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.901 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds