Wall clock time and date at job start Tue Mar 31 2020 14:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48504 * 109.46861 * 270.00394 * 3 2 1 5 5 H 1.48505 * 109.47085 * 29.99914 * 3 2 1 6 6 H 1.48496 * 109.47235 * 150.00316 * 3 2 1 7 7 C 1.37879 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99892 * 0.02562 * 7 2 1 10 10 O 1.42910 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.35881 * 116.99818 * 180.02562 * 10 9 7 12 12 C 1.38830 * 119.93124 * 179.97438 * 11 10 9 13 13 C 1.37913 * 120.06729 * 180.02562 * 12 11 10 14 14 C 1.39390 * 119.92984 * 359.97438 * 13 12 11 15 15 C 1.48341 * 120.06449 * 180.02562 * 14 13 12 16 16 C 1.39397 * 120.00539 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.07567 * 179.97438 * 16 15 14 18 18 C 1.38638 * 119.98497 * 359.97438 * 17 16 15 19 19 C 1.39526 * 120.17297 * 0.02562 * 18 17 16 20 20 C 1.38165 * 119.99209 * 359.97438 * 19 18 17 21 21 O 1.36019 * 119.44979 * 179.97438 * 19 18 17 22 22 C 1.42984 * 116.70794 * 327.14558 * 21 19 18 23 23 C 1.50758 * 109.59664 * 46.44996 * 22 21 19 24 24 O 1.21294 * 120.12440 * 148.64578 * 23 22 21 25 25 N 1.35036 * 119.77047 * 328.62978 * 23 22 21 26 26 C 1.39388 * 119.86976 * 0.27924 * 14 13 12 27 27 C 1.37914 * 119.93080 * 359.41944 * 26 14 13 28 28 H 0.97000 * 119.99829 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47393 * 60.00383 * 9 7 2 30 30 H 1.08997 * 109.46921 * 299.99677 * 9 7 2 31 31 H 1.07995 * 119.96756 * 359.97438 * 12 11 10 32 32 H 1.07999 * 120.03548 * 180.02562 * 13 12 11 33 33 H 1.08000 * 119.95917 * 0.02562 * 16 15 14 34 34 H 1.08001 * 120.00488 * 179.97438 * 17 16 15 35 35 H 1.07997 * 120.11033 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.44689 * 166.48309 * 22 21 19 37 37 H 1.09006 * 109.44644 * 286.42413 * 22 21 19 38 38 H 0.96997 * 120.49463 * 181.65213 * 25 23 22 39 39 H 1.08005 * 120.03790 * 179.70901 * 26 14 13 40 40 H 1.07993 * 119.96934 * 180.29731 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0017 11 6 1.6602 -4.8410 0.0014 12 6 2.5071 -5.9410 0.0019 13 6 1.9830 -7.2166 0.0010 14 6 0.6013 -7.4008 0.0000 15 6 0.0343 -8.7716 -0.0004 16 6 0.8833 -9.8772 0.0007 17 6 0.3573 -11.1532 0.0009 18 6 -1.0170 -11.3362 0.0005 19 6 -1.8713 -10.2331 -0.0007 20 6 -1.3481 -8.9543 -0.0008 21 8 -3.2172 -10.4296 -0.0016 22 6 -3.6976 -11.5844 -0.6944 23 6 -2.8689 -12.7844 -0.3122 24 8 -3.3712 -13.8882 -0.2873 25 7 -1.5652 -12.6264 0.0021 26 6 -0.2465 -6.2944 -0.0059 27 6 0.2836 -5.0212 0.0013 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5566 0.8903 31 1 3.5775 -5.7977 0.0023 32 1 2.6423 -8.0720 0.0019 33 1 1.9539 -9.7350 0.0023 34 1 1.0162 -12.0090 0.0013 35 1 -2.0076 -8.0991 -0.0013 36 1 -4.7389 -11.7619 -0.4255 37 1 -3.6233 -11.4197 -1.7694 38 1 -1.0163 -13.3941 0.2264 39 1 -1.3175 -6.4340 -0.0114 40 1 -0.3727 -4.1636 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245455460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:06 Heat of formation + Delta-G solvation = -78.758157 kcal Electronic energy + Delta-G solvation = -25207.657438 eV Core-core repulsion = 21337.886230 eV Total energy + Delta-G solvation = -3869.771208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.46996 -41.01201 -40.00187 -38.96386 -37.88328 -36.18041 -35.04751 -32.52215 -32.22968 -31.44618 -30.07337 -29.16620 -28.17141 -25.59643 -24.65845 -24.50458 -22.77860 -22.28883 -20.71689 -19.88597 -19.21163 -18.87559 -18.48556 -18.06697 -17.30057 -16.87243 -16.67243 -16.47130 -16.41286 -16.07122 -15.63596 -15.56163 -15.34654 -14.94883 -14.58579 -14.41699 -14.17659 -14.11815 -13.78442 -13.68320 -13.23479 -13.06773 -12.91373 -12.83521 -12.44315 -12.29010 -12.22410 -12.17709 -11.69490 -11.60029 -11.31591 -11.20152 -10.71593 -9.95391 -9.81892 -9.41363 -8.39701 -8.39599 -6.53817 -0.38741 0.26445 0.44234 0.68101 1.27597 1.39882 1.42476 1.54569 1.69037 2.23183 2.27455 2.57035 2.75150 2.91976 2.95176 3.08361 3.57841 3.68390 3.89487 3.95883 3.99037 4.12455 4.21089 4.28121 4.32272 4.37127 4.59241 4.67711 4.75972 4.80478 4.95218 4.97029 5.02077 5.15185 5.29175 5.35054 5.43913 5.44035 5.56002 5.60150 5.72408 5.77595 5.83815 5.91753 6.22567 6.50700 6.67242 6.79741 7.18307 8.72540 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.032085 B = 0.002013 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.465605 B =13905.290914 C =14738.731528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.988 3.012 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.067 0.933 9 C 0.212 3.788 10 O -0.336 6.336 11 C 0.113 3.887 12 C -0.167 4.167 13 C -0.054 4.054 14 C -0.101 4.101 15 C -0.021 4.021 16 C -0.102 4.102 17 C -0.104 4.104 18 C 0.076 3.924 19 C 0.070 3.930 20 C -0.118 4.118 21 O -0.315 6.315 22 C 0.049 3.951 23 C 0.489 3.511 24 O -0.551 6.551 25 N -0.650 5.650 26 C -0.066 4.066 27 C -0.227 4.227 28 H 0.274 0.726 29 H 0.002 0.998 30 H 0.001 0.999 31 H 0.142 0.858 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.121 0.879 38 H 0.424 0.576 39 H 0.142 0.858 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 -25.272 -1.333 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.810 3.190 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.086 0.914 9 C 0.138 3.862 10 O -0.250 6.250 11 C 0.067 3.933 12 C -0.185 4.185 13 C -0.072 4.072 14 C -0.101 4.101 15 C -0.022 4.022 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.019 4.019 19 C 0.024 3.976 20 C -0.136 4.136 21 O -0.229 6.229 22 C -0.029 4.029 23 C 0.277 3.723 24 O -0.429 6.429 25 N -0.297 5.297 26 C -0.084 4.084 27 C -0.246 4.246 28 H 0.083 0.917 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.160 0.840 32 H 0.190 0.810 33 H 0.180 0.820 34 H 0.185 0.815 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.138 0.862 38 H 0.265 0.735 39 H 0.160 0.840 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.945 -25.477 -1.279 25.583 hybrid contribution -0.092 0.807 0.058 0.814 sum -2.037 -24.670 -1.221 24.784 Atomic orbital electron populations 1.70054 1.07748 1.29039 1.49544 1.25973 0.96032 1.03416 0.93506 0.85109 0.78352 0.76585 0.78945 1.19164 1.19844 1.18704 1.21327 0.94414 0.90172 1.53542 0.91430 1.20178 0.88414 0.82669 0.94918 1.86039 1.38765 1.13027 1.87169 1.19883 0.92987 0.85843 0.94580 1.20647 1.00158 0.90244 1.07482 1.21314 0.94224 0.96250 0.95402 1.18636 0.93405 0.91564 1.06478 1.18494 0.91936 0.92014 0.99731 1.21348 1.01325 0.90140 0.99237 1.20861 0.91338 0.99059 1.01179 1.18203 0.93998 0.83161 1.06513 1.18536 0.82200 0.92762 1.04121 1.20641 0.95003 0.94969 1.03026 1.86259 1.19055 1.45165 1.72454 1.23422 0.99891 0.79458 1.00100 1.21914 0.82677 0.91754 0.75946 1.90803 1.71557 1.28020 1.52471 1.43649 1.11196 1.08235 1.66658 1.21189 1.00608 0.90443 0.96158 1.21338 0.94285 0.99154 1.09839 0.91735 0.98040 0.98074 0.84009 0.81046 0.82022 0.81511 0.84175 0.81869 0.86158 0.73516 0.84009 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.29 21.45 0.28 -53.90 16 2 C 0.01 0.57 5.46 84.66 0.46 1.04 16 3 Si 0.99 43.13 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.56 -32.45 9.43 25.60 0.24 -32.21 16 8 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 9 C 0.21 11.71 4.49 71.24 0.32 12.03 16 10 O -0.34 -16.67 10.12 -92.21 -0.93 -17.60 16 11 C 0.11 4.57 6.69 22.55 0.15 4.73 16 12 C -0.17 -5.12 9.97 22.33 0.22 -4.90 16 13 C -0.05 -1.25 9.42 22.47 0.21 -1.03 16 14 C -0.10 -2.43 5.88 -20.03 -0.12 -2.55 16 15 C -0.02 -0.40 5.88 -20.02 -0.12 -0.51 16 16 C -0.10 -1.34 9.42 22.50 0.21 -1.13 16 17 C -0.10 -1.15 9.93 22.31 0.22 -0.92 16 18 C 0.08 1.14 6.55 38.21 0.25 1.39 16 19 C 0.07 1.29 6.43 22.56 0.15 1.43 16 20 C -0.12 -2.30 9.37 22.54 0.21 -2.09 16 21 O -0.31 -5.70 10.45 -93.77 -0.98 -6.68 16 22 C 0.05 0.63 7.17 71.25 0.51 1.14 16 23 C 0.49 8.37 7.94 87.63 0.70 9.06 16 24 O -0.55 -12.94 17.95 -3.07 -0.06 -13.00 16 25 N -0.65 -9.02 5.47 -302.59 -1.65 -10.67 16 26 C -0.07 -1.93 9.42 22.47 0.21 -1.72 16 27 C -0.23 -8.60 9.02 22.34 0.20 -8.40 16 28 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.00 0.10 7.66 -2.39 -0.02 0.09 16 30 H 0.00 0.09 7.65 -2.39 -0.02 0.07 16 31 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.17 2.30 6.19 -2.91 -0.02 2.28 16 33 H 0.16 1.27 6.18 -2.91 -0.02 1.25 16 34 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 35 H 0.14 2.70 6.19 -2.91 -0.02 2.69 16 36 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.42 4.16 8.88 -92.71 -0.82 3.34 16 39 H 0.14 3.45 6.19 -2.91 -0.02 3.44 16 40 H 0.11 4.64 6.28 -2.91 -0.02 4.63 16 Total: -1.00 -73.20 344.34 3.01 -70.19 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.29 Total: 11.16 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.03 Total: -24.65 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -1.37 Total: -64.57 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.97 Total: -37.28 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -73.20 3.01 -70.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245455460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.572 kcal (2) G-P(sol) polarization free energy of solvation -73.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds