Wall clock time and date at job start Tue Mar 31 2020 14:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00429 * 2 1 4 4 C 1.50698 * 109.47081 * 95.34920 * 3 2 1 5 5 N 1.27927 * 124.24060 * 94.20181 * 4 3 2 6 6 C 1.34667 * 117.84607 * 179.81225 * 5 4 3 7 7 C 1.40968 * 129.68958 * 180.17850 * 6 5 4 8 8 C 1.36177 * 120.42611 * 180.33897 * 7 6 5 9 9 C 1.38785 * 120.78118 * 359.95982 * 8 7 6 10 10 C 1.37663 * 120.06567 * 0.02562 * 9 8 7 11 11 C 1.39334 * 119.95313 * 0.02562 * 10 9 8 12 12 S 1.70655 * 124.23458 * 274.50198 * 4 3 2 13 13 C 1.38828 * 119.99779 * 180.02562 * 2 1 3 14 14 C 1.39795 * 119.58272 * 350.68584 * 13 2 1 15 15 C 1.38597 * 119.48872 * 179.97438 * 14 13 2 16 16 C 1.38383 * 118.68487 * 359.97438 * 15 14 13 17 17 C 1.40559 * 119.14660 * 0.02562 * 16 15 14 18 18 C 1.41314 * 119.78270 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00173 * 344.87345 * 18 17 16 20 20 C 1.40036 * 119.99810 * 164.87172 * 18 17 16 21 21 N 1.30745 * 119.99991 * 167.60627 * 20 18 17 22 22 Si 1.86804 * 119.99880 * 347.60623 * 20 18 17 23 23 H 1.48494 * 109.47145 * 94.71363 * 22 20 18 24 24 H 1.48499 * 109.46773 * 214.71692 * 22 20 18 25 25 H 1.48503 * 109.46991 * 334.71200 * 22 20 18 26 26 N 1.31955 * 119.58529 * 170.41653 * 13 2 1 27 27 H 1.08995 * 109.47267 * 270.00070 * 1 2 3 28 28 H 1.09006 * 109.47255 * 149.99648 * 1 2 3 29 29 H 1.09007 * 109.46848 * 30.00081 * 1 2 3 30 30 H 1.09006 * 109.47634 * 215.34707 * 3 2 1 31 31 H 1.08998 * 109.47012 * 335.34988 * 3 2 1 32 32 H 1.08003 * 119.78725 * 0.31194 * 7 6 5 33 33 H 1.08007 * 119.60984 * 179.97438 * 8 7 6 34 34 H 1.07998 * 119.96844 * 180.02562 * 9 8 7 35 35 H 1.08001 * 120.02350 * 179.97438 * 10 9 8 36 36 H 1.08002 * 120.25779 * 359.95666 * 14 13 2 37 37 H 1.08003 * 120.65876 * 180.02562 * 15 14 13 38 38 H 1.07997 * 120.43201 * 179.97438 * 16 15 14 39 39 H 0.96996 * 119.99875 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.5634 1.6374 1.4146 5 7 3.6820 1.3529 1.9663 6 6 3.8746 1.7491 3.2388 7 6 4.9954 1.5754 4.0760 8 6 4.9845 2.0534 5.3510 9 6 3.8741 2.7196 5.8503 10 6 2.7654 2.9041 5.0555 11 6 2.7581 2.4209 3.7486 12 16 1.5346 2.4805 2.4837 13 6 2.1591 -1.2023 -0.0005 14 6 1.4651 -2.3999 0.1957 15 6 2.1599 -3.5991 0.1943 16 6 3.5293 -3.5732 -0.0034 17 6 4.1700 -2.3369 -0.1952 18 6 5.5679 -2.2947 -0.3978 19 1 6.1734 -3.1585 -0.1664 20 6 6.1680 -1.1327 -0.8984 21 7 7.4682 -0.9999 -0.8602 22 14 5.1110 0.2275 -1.6210 23 1 4.8278 1.2428 -0.5751 24 1 5.8322 0.8678 -2.7502 25 1 3.8328 -0.3470 -2.1123 26 7 3.4647 -1.2007 -0.1916 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 -0.8900 -0.5139 29 1 -0.3633 0.8900 -0.5139 30 1 3.1052 1.1642 -0.5945 31 1 1.5704 2.0503 -0.4286 32 1 5.8683 1.0595 3.7038 33 1 5.8503 1.9126 5.9812 34 1 3.8798 3.0937 6.8635 35 1 1.9015 3.4222 5.4449 36 1 0.3959 -2.3907 0.3475 37 1 1.6427 -4.5354 0.3436 38 1 4.0986 -4.4909 -0.0095 39 1 7.8839 -0.1952 -1.2073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255096053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:26 Heat of formation + Delta-G solvation = 106.042123 kcal Electronic energy + Delta-G solvation = -24791.856004 eV Core-core repulsion = 21405.143960 eV Total energy + Delta-G solvation = -3386.712044 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.094 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19715 -38.89447 -37.07435 -35.71036 -33.39786 -31.23742 -31.06367 -30.63368 -29.56235 -27.89258 -25.55526 -25.06229 -23.72587 -22.49848 -21.50990 -20.64513 -19.98580 -18.39590 -17.58361 -16.83850 -16.37743 -15.68208 -15.33627 -15.19552 -14.61011 -14.48182 -14.43135 -14.13989 -13.84921 -13.53195 -13.13085 -12.89303 -12.54709 -12.38874 -12.35265 -12.05334 -11.99237 -11.68247 -11.46048 -11.12527 -10.80560 -10.63658 -10.53884 -10.39013 -10.01992 -9.91975 -9.46356 -9.32414 -8.74539 -8.54316 -8.25456 -8.02140 -7.60135 -6.82652 -6.77788 -4.57806 0.53791 1.19620 1.39912 1.88384 2.49569 2.71698 2.88726 3.45080 3.53763 3.60376 3.66844 3.87187 4.13114 4.44227 4.65578 4.69352 4.90349 5.09468 5.21166 5.26618 5.33735 5.39372 5.59774 5.62590 5.80209 5.88370 5.95464 5.96672 6.04204 6.16344 6.31610 6.34155 6.40120 6.46105 6.66517 6.71429 6.75204 7.10596 7.32305 7.59403 7.67986 7.78503 7.97717 8.16247 8.29256 8.71463 8.76940 9.74420 10.12257 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.005739 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.817938 B = 4877.609235 C = 5853.484743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.618 5.618 3 C 0.186 3.814 4 C 0.097 3.903 5 N -0.426 5.426 6 C 0.088 3.912 7 C -0.057 4.057 8 C -0.113 4.113 9 C -0.108 4.108 10 C -0.076 4.076 11 C -0.181 4.181 12 S 0.063 5.937 13 C 0.428 3.572 14 C -0.357 4.357 15 C -0.024 4.024 16 C -0.296 4.296 17 C 0.280 3.720 18 C -0.412 4.412 19 H 0.093 0.907 20 C 0.091 3.909 21 N -0.803 5.803 22 Si 0.976 3.024 23 H -0.253 1.253 24 H -0.335 1.335 25 H -0.255 1.255 26 N -0.590 5.590 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.426 9.650 7.961 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.336 5.336 3 C 0.058 3.942 4 C -0.191 4.191 5 N -0.137 5.137 6 C -0.033 4.033 7 C -0.078 4.078 8 C -0.134 4.134 9 C -0.130 4.130 10 C -0.099 4.099 11 C -0.300 4.300 12 S 0.318 5.682 13 C 0.193 3.807 14 C -0.382 4.382 15 C -0.048 4.048 16 C -0.319 4.319 17 C 0.156 3.844 18 C -0.444 4.444 19 H 0.111 0.889 20 C -0.131 4.131 21 N -0.427 5.427 22 Si 0.811 3.189 23 H -0.180 1.180 24 H -0.268 1.268 25 H -0.181 1.181 26 N -0.316 5.316 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.107 0.893 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.418 10.594 7.336 16.570 hybrid contribution 0.030 -0.484 0.536 0.723 sum -10.388 10.110 7.872 16.495 Atomic orbital electron populations 1.21555 0.79319 1.02313 1.00685 1.45947 1.04102 1.02083 1.81488 1.20339 0.99980 0.86339 0.87588 1.27717 0.91355 0.97704 1.02302 1.66284 1.20752 1.18345 1.08325 1.19406 0.95049 0.98792 0.90057 1.20544 0.96509 0.98226 0.92510 1.20695 0.98902 0.98635 0.95155 1.21067 0.93013 0.99288 0.99588 1.20268 0.99017 0.99950 0.90631 1.23885 0.98158 1.07783 1.00207 1.83636 1.20423 1.58689 1.05402 1.18020 0.88935 0.83923 0.89864 1.20498 0.98614 0.91954 1.27173 1.20676 0.94082 0.95860 0.94186 1.21451 0.94190 0.97871 1.18355 1.18199 0.92770 0.86049 0.87355 1.19455 0.89739 1.00030 1.35143 0.88857 1.26318 0.95256 0.99613 0.91918 1.69653 1.11864 1.27935 1.33214 0.85149 0.78444 0.78755 0.76521 1.17997 1.26813 1.18085 1.66481 1.05477 1.30201 1.29410 0.94031 0.90868 0.92114 0.86216 0.89334 0.84519 0.84949 0.85093 0.85598 0.88293 0.88239 0.87924 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.45 9.98 59.84 0.60 2.04 16 2 N -0.62 -11.64 2.98 -183.07 -0.54 -12.18 16 3 C 0.19 3.39 6.05 -5.20 -0.03 3.36 16 4 C 0.10 1.82 6.84 -13.91 -0.10 1.73 16 5 N -0.43 -9.09 10.57 -9.08 -0.10 -9.19 16 6 C 0.09 1.64 7.00 -84.96 -0.59 1.05 16 7 C -0.06 -0.93 10.05 -39.29 -0.39 -1.33 16 8 C -0.11 -1.40 9.94 -40.12 -0.40 -1.80 16 9 C -0.11 -1.20 10.04 -39.59 -0.40 -1.60 16 10 C -0.08 -0.96 10.07 -39.38 -0.40 -1.35 16 11 C -0.18 -2.89 6.56 -38.54 -0.25 -3.14 16 12 S 0.06 0.93 23.11 -107.50 -2.48 -1.55 16 13 C 0.43 9.78 7.32 -155.32 -1.14 8.64 16 14 C -0.36 -7.66 9.17 -38.87 -0.36 -8.02 16 15 C -0.02 -0.52 10.15 -39.40 -0.40 -0.92 16 16 C -0.30 -7.21 9.83 -38.65 -0.38 -7.59 16 17 C 0.28 7.51 6.18 -85.00 -0.53 6.98 16 18 C -0.41 -11.62 9.67 -37.74 -0.37 -11.98 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 20 C 0.09 2.52 5.52 -17.34 -0.10 2.42 16 21 N -0.80 -22.20 13.92 55.55 0.77 -21.43 16 22 Si 0.98 24.14 23.30 -169.99 -3.96 20.18 16 23 H -0.25 -6.16 6.01 56.52 0.34 -5.82 16 24 H -0.33 -8.17 7.11 56.52 0.40 -7.77 16 25 H -0.26 -6.49 6.23 56.52 0.35 -6.14 16 26 N -0.59 -15.10 4.27 -10.33 -0.04 -15.14 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.98 6.59 -51.93 -0.34 0.64 16 29 H 0.06 0.66 7.86 -51.92 -0.41 0.25 16 30 H 0.12 2.54 2.86 -51.93 -0.15 2.39 16 31 H 0.09 1.23 7.83 -51.93 -0.41 0.82 16 32 H 0.14 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.10 1.84 6.40 -52.49 -0.34 1.51 16 37 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.29 7.24 8.29 -40.82 -0.34 6.90 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -32.40 336.23 -10.78 -43.18 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.27 Total: 2.57 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -5.22 Total: -11.50 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.09 Total: -57.94 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -3.96 Total: 20.18 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.48 Total: -1.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.40 -10.78 -43.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.222 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds