Wall clock time and date at job start Tue Mar 31 2020 14:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00429 * 2 1 4 4 C 1.50698 * 109.47081 * 95.34920 * 3 2 1 5 5 N 1.27927 * 124.24060 * 94.20181 * 4 3 2 6 6 C 1.34667 * 117.84607 * 179.81225 * 5 4 3 7 7 C 1.40968 * 129.68958 * 180.17850 * 6 5 4 8 8 C 1.36177 * 120.42611 * 180.33897 * 7 6 5 9 9 C 1.38785 * 120.78118 * 359.95982 * 8 7 6 10 10 C 1.37663 * 120.06567 * 0.02562 * 9 8 7 11 11 C 1.39334 * 119.95313 * 0.02562 * 10 9 8 12 12 S 1.70655 * 124.23458 * 274.50198 * 4 3 2 13 13 C 1.38828 * 119.99779 * 180.02562 * 2 1 3 14 14 C 1.39795 * 119.58272 * 350.68584 * 13 2 1 15 15 C 1.38597 * 119.48872 * 179.97438 * 14 13 2 16 16 C 1.38383 * 118.68487 * 359.97438 * 15 14 13 17 17 C 1.40559 * 119.14660 * 0.02562 * 16 15 14 18 18 C 1.41314 * 119.78270 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00173 * 344.87345 * 18 17 16 20 20 C 1.40036 * 119.99810 * 164.87172 * 18 17 16 21 21 N 1.30745 * 119.99991 * 167.60627 * 20 18 17 22 22 Si 1.86804 * 119.99880 * 347.60623 * 20 18 17 23 23 H 1.48494 * 109.47145 * 94.71363 * 22 20 18 24 24 H 1.48499 * 109.46773 * 214.71692 * 22 20 18 25 25 H 1.48503 * 109.46991 * 334.71200 * 22 20 18 26 26 N 1.31955 * 119.58529 * 170.41653 * 13 2 1 27 27 H 1.08995 * 109.47267 * 270.00070 * 1 2 3 28 28 H 1.09006 * 109.47255 * 149.99648 * 1 2 3 29 29 H 1.09007 * 109.46848 * 30.00081 * 1 2 3 30 30 H 1.09006 * 109.47634 * 215.34707 * 3 2 1 31 31 H 1.08998 * 109.47012 * 335.34988 * 3 2 1 32 32 H 1.08003 * 119.78725 * 0.31194 * 7 6 5 33 33 H 1.08007 * 119.60984 * 179.97438 * 8 7 6 34 34 H 1.07998 * 119.96844 * 180.02562 * 9 8 7 35 35 H 1.08001 * 120.02350 * 179.97438 * 10 9 8 36 36 H 1.08002 * 120.25779 * 359.95666 * 14 13 2 37 37 H 1.08003 * 120.65876 * 180.02562 * 15 14 13 38 38 H 1.07997 * 120.43201 * 179.97438 * 16 15 14 39 39 H 0.96996 * 119.99875 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.5634 1.6374 1.4146 5 7 3.6820 1.3529 1.9663 6 6 3.8746 1.7491 3.2388 7 6 4.9954 1.5754 4.0760 8 6 4.9845 2.0534 5.3510 9 6 3.8741 2.7196 5.8503 10 6 2.7654 2.9041 5.0555 11 6 2.7581 2.4209 3.7486 12 16 1.5346 2.4805 2.4837 13 6 2.1591 -1.2023 -0.0005 14 6 1.4651 -2.3999 0.1957 15 6 2.1599 -3.5991 0.1943 16 6 3.5293 -3.5732 -0.0034 17 6 4.1700 -2.3369 -0.1952 18 6 5.5679 -2.2947 -0.3978 19 1 6.1734 -3.1585 -0.1664 20 6 6.1680 -1.1327 -0.8984 21 7 7.4682 -0.9999 -0.8602 22 14 5.1110 0.2275 -1.6210 23 1 4.8278 1.2428 -0.5751 24 1 5.8322 0.8678 -2.7502 25 1 3.8328 -0.3470 -2.1123 26 7 3.4647 -1.2007 -0.1916 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 -0.8900 -0.5139 29 1 -0.3633 0.8900 -0.5139 30 1 3.1052 1.1642 -0.5945 31 1 1.5704 2.0503 -0.4286 32 1 5.8683 1.0595 3.7038 33 1 5.8503 1.9126 5.9812 34 1 3.8798 3.0937 6.8635 35 1 1.9015 3.4222 5.4449 36 1 0.3959 -2.3907 0.3475 37 1 1.6427 -4.5354 0.3436 38 1 4.0986 -4.4909 -0.0095 39 1 7.8839 -0.1952 -1.2073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255096053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:25 Heat of formation + Delta-G solvation = 86.620374 kcal Electronic energy + Delta-G solvation = -24792.698195 eV Core-core repulsion = 21405.143960 eV Total energy + Delta-G solvation = -3387.554235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39110 -40.61622 -38.37033 -37.14827 -35.37760 -33.02149 -32.15047 -32.09688 -31.15252 -29.14329 -27.37122 -26.49771 -24.95898 -23.72997 -23.15511 -22.17694 -21.45493 -19.62534 -19.51794 -18.40999 -17.62107 -16.94771 -16.83379 -16.48837 -16.30352 -16.15248 -15.85244 -15.44026 -15.11992 -15.02478 -14.76498 -14.45041 -14.12735 -13.86001 -13.69790 -13.42454 -13.15500 -12.94117 -12.82228 -12.73798 -12.50844 -12.39894 -12.22126 -11.91282 -11.79562 -11.32626 -11.14942 -10.80510 -10.37134 -10.10550 -9.69261 -9.49288 -9.12204 -8.86824 -8.45087 -6.65509 -0.63124 0.13461 0.25603 0.64956 0.80200 1.05519 1.32986 1.42258 1.57882 1.66094 2.22986 2.44568 2.66070 2.71697 2.95704 3.58507 3.72837 3.92871 3.97709 4.07526 4.08994 4.26659 4.31773 4.38164 4.57018 4.60249 4.64059 4.72676 4.77143 4.87130 4.88821 4.91333 4.93874 5.12932 5.23311 5.25454 5.37982 5.54380 5.76855 5.79926 5.89640 5.98712 6.23712 6.43429 6.69381 6.75850 6.86960 7.86062 8.10971 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.005739 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.817938 B = 4877.609235 C = 5853.484743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.617 5.617 3 C 0.178 3.822 4 C 0.067 3.933 5 N -0.483 5.483 6 C 0.044 3.956 7 C -0.094 4.094 8 C -0.099 4.099 9 C -0.091 4.091 10 C -0.075 4.075 11 C -0.200 4.200 12 S 0.137 5.863 13 C 0.409 3.591 14 C -0.340 4.340 15 C -0.017 4.017 16 C -0.323 4.323 17 C 0.267 3.733 18 C -0.455 4.455 19 H 0.065 0.935 20 C 0.058 3.942 21 N -0.842 5.842 22 Si 1.036 2.964 23 H -0.254 1.254 24 H -0.334 1.334 25 H -0.267 1.267 26 N -0.604 5.604 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.164 0.836 34 H 0.180 0.820 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.104 0.896 39 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.964 11.638 10.340 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.334 5.334 3 C 0.050 3.950 4 C -0.220 4.220 5 N -0.196 5.196 6 C -0.076 4.076 7 C -0.115 4.115 8 C -0.120 4.120 9 C -0.112 4.112 10 C -0.098 4.098 11 C -0.319 4.319 12 S 0.393 5.607 13 C 0.173 3.827 14 C -0.365 4.365 15 C -0.041 4.041 16 C -0.346 4.346 17 C 0.141 3.859 18 C -0.488 4.488 19 H 0.083 0.917 20 C -0.159 4.159 21 N -0.467 5.467 22 Si 0.870 3.130 23 H -0.180 1.180 24 H -0.268 1.268 25 H -0.194 1.194 26 N -0.330 5.330 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.181 0.819 34 H 0.197 0.803 35 H 0.179 0.821 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.122 0.878 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.006 12.607 9.717 21.875 hybrid contribution 1.166 -1.096 0.013 1.600 sum -13.840 11.510 9.730 20.462 Atomic orbital electron populations 1.21901 0.76021 1.04514 1.02079 1.46226 1.05909 1.00902 1.80358 1.20440 0.99559 0.87279 0.87721 1.27666 0.92219 0.99035 1.03093 1.66250 1.22897 1.20245 1.10255 1.19681 0.96972 1.00964 0.89978 1.20666 0.95893 1.00496 0.94488 1.21111 1.00567 0.96723 0.93551 1.21641 0.91361 0.96965 1.01242 1.20811 1.00690 0.99091 0.89202 1.24275 0.97806 1.07926 1.01916 1.83051 1.17876 1.56704 1.03069 1.18550 0.88406 0.86368 0.89386 1.21044 1.00525 0.91193 1.23731 1.21134 0.92923 0.97961 0.92098 1.21592 0.95865 0.97121 1.19997 1.18325 0.92541 0.87586 0.87407 1.19412 0.90903 0.99843 1.38604 0.91652 1.26894 0.96046 1.00923 0.92039 1.69673 1.12627 1.28964 1.35481 0.84305 0.76348 0.76736 0.75658 1.18003 1.26798 1.19361 1.66380 1.07210 1.29821 1.29555 0.92826 0.90233 0.88513 0.89757 0.84913 0.87023 0.81897 0.80313 0.82065 0.84365 0.84090 0.87817 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.22 9.98 127.77 1.28 3.49 16 2 N -0.62 -21.77 2.98 -733.12 -2.18 -23.95 16 3 C 0.18 6.27 6.05 85.63 0.52 6.78 16 4 C 0.07 2.45 6.84 88.68 0.61 3.06 16 5 N -0.48 -21.30 10.57 -182.50 -1.93 -23.23 16 6 C 0.04 1.67 7.00 39.79 0.28 1.95 16 7 C -0.09 -3.18 10.05 22.46 0.23 -2.96 16 8 C -0.10 -2.26 9.94 21.92 0.22 -2.04 16 9 C -0.09 -1.62 10.04 22.26 0.22 -1.40 16 10 C -0.08 -1.59 10.07 22.40 0.23 -1.37 16 11 C -0.20 -5.99 6.56 22.94 0.15 -5.84 16 12 S 0.14 3.70 23.11 -56.49 -1.31 2.39 16 13 C 0.41 18.22 7.32 133.42 0.98 19.19 16 14 C -0.34 -13.59 9.17 22.73 0.21 -13.38 16 15 C -0.02 -0.71 10.15 22.39 0.23 -0.48 16 16 C -0.32 -16.04 9.83 22.87 0.22 -15.81 16 17 C 0.27 14.98 6.18 40.18 0.25 15.22 16 18 C -0.46 -27.74 9.67 23.46 0.23 -27.52 16 19 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 20 C 0.06 3.46 5.52 85.29 0.47 3.94 16 21 N -0.84 -50.07 13.92 21.84 0.30 -49.77 16 22 Si 1.04 53.38 23.30 68.60 1.60 54.98 16 23 H -0.25 -12.95 6.01 99.48 0.60 -12.35 16 24 H -0.33 -16.70 7.11 99.48 0.71 -16.00 16 25 H -0.27 -13.98 6.23 99.48 0.62 -13.36 16 26 N -0.60 -31.61 4.27 -186.58 -0.80 -32.40 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.74 6.59 -2.38 -0.02 1.72 16 29 H 0.10 1.56 7.86 -2.38 -0.02 1.54 16 30 H 0.08 3.60 2.86 -2.38 -0.01 3.59 16 31 H 0.13 3.30 7.83 -2.39 -0.02 3.28 16 32 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 33 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.14 4.43 6.40 -2.91 -0.02 4.41 16 37 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 39 H 0.29 15.85 8.29 -92.71 -0.77 15.08 16 Total: -1.00 -78.89 336.23 2.89 -76.01 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.89 Total: 13.14 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 6.30 Total: -17.17 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -4.60 Total: -129.35 kcal Atomic # 14 Polarization: 53.38 SS G_CDS: 1.60 Total: 54.98 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.31 Total: 2.39 kcal Total: -78.89 2.89 -76.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.627 kcal (2) G-P(sol) polarization free energy of solvation -78.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds