Wall clock time and date at job start Tue Mar 31 2020 14:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46834 * 2 1 4 4 C 1.46500 * 119.99950 * 274.46287 * 3 2 1 5 5 C 1.50704 * 109.47047 * 264.82874 * 4 3 2 6 6 H 1.07994 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99571 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00407 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99843 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46962 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47474 * 119.99546 * 9 7 5 12 12 H 1.48501 * 109.47277 * 240.00286 * 9 7 5 13 13 C 1.34774 * 120.00215 * 94.46466 * 3 2 1 14 14 O 1.21366 * 119.99879 * 354.64590 * 13 3 2 15 15 C 1.49368 * 120.00217 * 174.63940 * 13 3 2 16 16 O 1.21360 * 120.00070 * 354.43476 * 15 13 3 17 17 N 1.34772 * 120.00227 * 174.42796 * 15 13 3 18 18 C 1.39394 * 120.00395 * 185.02501 * 17 15 13 19 19 C 1.39490 * 120.85767 * 214.78411 * 18 17 15 20 20 C 1.37894 * 119.09790 * 180.02562 * 19 18 17 21 21 C 1.50705 * 119.56937 * 180.02562 * 20 19 18 22 22 N 1.32000 * 120.85905 * 359.97438 * 20 19 18 23 23 C 1.32048 * 121.88890 * 359.74782 * 22 20 19 24 24 Cl 1.73602 * 119.59487 * 180.29474 * 23 22 20 25 25 C 1.38130 * 120.80430 * 0.54062 * 23 22 20 26 26 H 1.09000 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47130 * 300.00334 * 1 2 3 28 28 H 1.09001 * 109.47199 * 59.99717 * 1 2 3 29 29 H 1.09001 * 109.47208 * 240.00215 * 2 1 3 30 30 H 1.09002 * 109.46690 * 119.99709 * 2 1 3 31 31 H 1.08997 * 109.47191 * 24.82722 * 4 3 2 32 32 H 1.08998 * 109.46911 * 144.82519 * 4 3 2 33 33 H 0.97002 * 119.99891 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99910 * 5.03311 * 17 15 13 35 35 H 1.08001 * 120.45375 * 0.02562 * 19 18 17 36 36 H 1.08999 * 109.46757 * 90.00205 * 21 20 19 37 37 H 1.09000 * 109.46628 * 209.99955 * 21 20 19 38 38 H 1.08994 * 109.47421 * 330.00166 * 21 20 19 39 39 H 1.08009 * 120.47066 * 179.72669 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1693 2.1048 -1.2649 5 6 3.5929 1.9856 -1.7449 6 1 4.3131 1.4272 -1.1655 7 6 3.9760 2.5904 -2.9232 8 7 3.0990 3.2709 -3.6285 9 14 5.7407 2.4433 -3.5178 10 1 6.5229 1.6319 -2.5507 11 1 5.7614 1.7841 -4.8483 12 1 6.3409 3.7972 -3.6267 13 6 2.3286 1.9864 1.1636 14 8 2.1124 1.4234 2.2168 15 6 2.9386 3.3498 1.1570 16 8 3.2479 3.8711 0.1057 17 7 3.1453 4.0012 2.3186 18 6 3.6164 5.3131 2.3078 19 6 4.4833 5.7701 3.3005 20 6 4.9266 7.0751 3.2549 21 6 5.8639 7.5798 4.3216 22 7 4.5416 7.8875 2.2884 23 6 3.7266 7.4918 1.3277 24 17 3.2646 8.6085 0.0813 25 6 3.2333 6.2018 1.3052 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4978 1.6782 -2.0099 32 1 1.9236 3.1559 -1.1138 33 1 3.3685 3.6960 -4.4577 34 1 2.9663 3.5571 3.1622 35 1 4.8029 5.1110 4.0941 36 1 6.8944 7.4083 4.0106 37 1 5.7025 8.6473 4.4715 38 1 5.6727 7.0490 5.2541 39 1 2.5635 5.8852 0.5193 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337929186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:05 Heat of formation + Delta-G solvation = -26.810615 kcal Electronic energy + Delta-G solvation = -25426.765928 eV Core-core repulsion = 21589.107236 eV Total energy + Delta-G solvation = -3837.658692 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.99649 -39.86160 -38.14083 -36.60252 -35.98400 -34.84417 -32.70664 -32.60777 -30.94240 -30.57141 -27.78958 -27.16712 -25.32972 -23.35629 -23.15022 -22.78859 -20.98912 -19.55597 -17.76477 -17.25781 -16.73895 -16.37492 -16.10676 -15.84812 -15.25221 -15.09794 -14.76967 -14.69411 -14.22553 -13.85892 -13.59751 -13.41311 -13.06280 -13.00335 -12.49042 -12.42248 -12.19506 -12.04247 -11.80000 -11.71168 -11.49947 -11.18852 -11.02538 -10.89248 -10.75784 -10.67219 -10.51003 -10.04074 -9.78296 -9.73100 -8.94727 -8.79042 -8.65528 -8.38195 -7.97526 -6.07561 -4.09485 0.89630 1.03243 1.84898 2.01710 2.64436 3.28107 3.36650 3.38771 3.51127 3.77100 3.90034 4.27238 4.41877 4.76327 4.86276 4.90327 4.98980 5.29694 5.30900 5.43360 5.44115 5.48348 5.58048 5.61487 5.72975 5.82722 6.02453 6.08675 6.17151 6.21638 6.48569 6.58927 6.62710 7.13807 7.25511 7.36113 7.74250 7.80479 7.96355 8.10105 8.16145 8.50904 8.89509 9.53579 11.01439 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.004749 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.857872 B = 5895.098541 C = 7313.784674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.556 5.556 4 C 0.230 3.770 5 C -0.514 4.514 6 H 0.054 0.946 7 C 0.071 3.929 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.559 6.559 15 C 0.485 3.515 16 O -0.416 6.416 17 N -0.661 5.661 18 C 0.223 3.777 19 C -0.202 4.202 20 C 0.161 3.839 21 C -0.100 4.100 22 N -0.497 5.497 23 C 0.201 3.799 24 Cl -0.026 7.026 25 C -0.164 4.164 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.262 0.738 34 H 0.421 0.579 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 3.930 13.469 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.286 5.286 4 C 0.112 3.888 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.441 6.441 15 C 0.266 3.734 16 O -0.280 6.280 17 N -0.310 5.310 18 C 0.118 3.882 19 C -0.225 4.225 20 C 0.023 3.977 21 C -0.158 4.158 22 N -0.211 5.211 23 C 0.038 3.962 24 Cl 0.002 6.998 25 C -0.188 4.188 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.260 0.740 35 H 0.162 0.838 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.482 4.966 12.805 13.742 hybrid contribution 0.619 -0.990 -0.344 1.217 sum 0.137 3.976 12.461 13.081 Atomic orbital electron populations 1.22105 0.96102 1.01701 1.02309 1.21460 0.94045 0.82526 1.03159 1.48315 1.58590 1.13555 1.08131 1.19901 0.97886 0.93055 0.77981 1.21184 0.94707 1.32923 1.06421 0.92744 1.24778 0.97215 0.94736 0.96442 1.69909 1.33926 1.33811 1.15153 0.86546 0.85088 0.77922 0.78468 1.19971 1.20988 1.20880 1.19600 0.80396 0.86253 0.84715 1.90662 1.55976 1.66496 1.30972 1.20625 0.81123 0.87930 0.83696 1.91072 1.42077 1.66177 1.28719 1.43253 1.65668 1.11226 1.10875 1.17756 0.91814 0.84141 0.94459 1.21774 1.00224 0.97980 1.02531 1.20866 0.94769 0.88970 0.93117 1.20717 0.97568 1.02609 0.94894 1.66829 1.13385 1.38248 1.02686 1.21293 0.94932 0.88877 0.91147 1.98411 1.89902 1.62576 1.48898 1.21834 1.03728 0.91325 1.01911 0.91940 0.92684 0.92161 0.89748 0.90499 0.94645 0.92334 0.92812 0.74030 0.83764 0.90061 0.90200 0.90377 0.82427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.11 1.87 6.12 -4.04 -0.02 1.84 16 3 N -0.56 -11.28 2.47 -175.59 -0.43 -11.71 16 4 C 0.23 5.50 4.77 -5.19 -0.02 5.48 16 5 C -0.51 -13.64 7.72 -34.44 -0.27 -13.91 16 6 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 8 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.51 10.01 7.68 -11.62 -0.09 9.92 16 14 O -0.56 -10.87 16.05 5.48 0.09 -10.78 16 15 C 0.48 9.30 7.45 -11.63 -0.09 9.21 16 16 O -0.42 -9.44 9.99 5.49 0.05 -9.39 16 17 N -0.66 -10.00 5.33 -10.14 -0.05 -10.05 16 18 C 0.22 3.34 6.29 -83.54 -0.53 2.82 16 19 C -0.20 -2.46 9.69 -39.24 -0.38 -2.84 16 20 C 0.16 2.01 6.78 -82.64 -0.56 1.45 16 21 C -0.10 -0.84 10.17 36.01 0.37 -0.48 16 22 N -0.50 -7.52 10.25 -6.70 -0.07 -7.59 16 23 C 0.20 3.26 7.27 -17.50 -0.13 3.13 16 24 Cl -0.03 -0.41 29.10 -51.86 -1.51 -1.92 16 25 C -0.16 -2.75 8.49 -39.21 -0.33 -3.08 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 30 H 0.08 1.25 7.37 -51.93 -0.38 0.87 16 31 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 32 H 0.06 1.51 5.93 -51.93 -0.31 1.20 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.42 5.27 8.30 -40.82 -0.34 4.93 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 39 H 0.16 2.89 6.63 -52.48 -0.35 2.54 16 LS Contribution 352.78 15.07 5.32 5.32 Total: -1.00 -31.04 352.78 -7.37 -38.42 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.72 Total: 2.27 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: -1.77 Total: 13.42 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.18 Total: -53.95 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.14 Total: -20.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.51 Total: -1.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.04 -7.37 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337929186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.605 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds