Wall clock time and date at job start Tue Mar 31 2020 14:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46834 * 2 1 4 4 C 1.46500 * 119.99950 * 274.46287 * 3 2 1 5 5 C 1.50704 * 109.47047 * 264.82874 * 4 3 2 6 6 H 1.07994 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99571 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00407 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99843 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46962 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47474 * 119.99546 * 9 7 5 12 12 H 1.48501 * 109.47277 * 240.00286 * 9 7 5 13 13 C 1.34774 * 120.00215 * 94.46466 * 3 2 1 14 14 O 1.21366 * 119.99879 * 354.64590 * 13 3 2 15 15 C 1.49368 * 120.00217 * 174.63940 * 13 3 2 16 16 O 1.21360 * 120.00070 * 354.43476 * 15 13 3 17 17 N 1.34772 * 120.00227 * 174.42796 * 15 13 3 18 18 C 1.39394 * 120.00395 * 185.02501 * 17 15 13 19 19 C 1.39490 * 120.85767 * 214.78411 * 18 17 15 20 20 C 1.37894 * 119.09790 * 180.02562 * 19 18 17 21 21 C 1.50705 * 119.56937 * 180.02562 * 20 19 18 22 22 N 1.32000 * 120.85905 * 359.97438 * 20 19 18 23 23 C 1.32048 * 121.88890 * 359.74782 * 22 20 19 24 24 Cl 1.73602 * 119.59487 * 180.29474 * 23 22 20 25 25 C 1.38130 * 120.80430 * 0.54062 * 23 22 20 26 26 H 1.09000 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47130 * 300.00334 * 1 2 3 28 28 H 1.09001 * 109.47199 * 59.99717 * 1 2 3 29 29 H 1.09001 * 109.47208 * 240.00215 * 2 1 3 30 30 H 1.09002 * 109.46690 * 119.99709 * 2 1 3 31 31 H 1.08997 * 109.47191 * 24.82722 * 4 3 2 32 32 H 1.08998 * 109.46911 * 144.82519 * 4 3 2 33 33 H 0.97002 * 119.99891 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99910 * 5.03311 * 17 15 13 35 35 H 1.08001 * 120.45375 * 0.02562 * 19 18 17 36 36 H 1.08999 * 109.46757 * 90.00205 * 21 20 19 37 37 H 1.09000 * 109.46628 * 209.99955 * 21 20 19 38 38 H 1.08994 * 109.47421 * 330.00166 * 21 20 19 39 39 H 1.08009 * 120.47066 * 179.72669 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1693 2.1048 -1.2649 5 6 3.5929 1.9856 -1.7449 6 1 4.3131 1.4272 -1.1655 7 6 3.9760 2.5904 -2.9232 8 7 3.0990 3.2709 -3.6285 9 14 5.7407 2.4433 -3.5178 10 1 6.5229 1.6319 -2.5507 11 1 5.7614 1.7841 -4.8483 12 1 6.3409 3.7972 -3.6267 13 6 2.3286 1.9864 1.1636 14 8 2.1124 1.4234 2.2168 15 6 2.9386 3.3498 1.1570 16 8 3.2479 3.8711 0.1057 17 7 3.1453 4.0012 2.3186 18 6 3.6164 5.3131 2.3078 19 6 4.4833 5.7701 3.3005 20 6 4.9266 7.0751 3.2549 21 6 5.8639 7.5798 4.3216 22 7 4.5416 7.8875 2.2884 23 6 3.7266 7.4918 1.3277 24 17 3.2646 8.6085 0.0813 25 6 3.2333 6.2018 1.3052 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4978 1.6782 -2.0099 32 1 1.9236 3.1559 -1.1138 33 1 3.3685 3.6960 -4.4577 34 1 2.9663 3.5571 3.1622 35 1 4.8029 5.1110 4.0941 36 1 6.8944 7.4083 4.0106 37 1 5.7025 8.6473 4.4715 38 1 5.6727 7.0490 5.2541 39 1 2.5635 5.8852 0.5193 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337929186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:05 Heat of formation + Delta-G solvation = -46.878448 kcal Electronic energy + Delta-G solvation = -25427.636134 eV Core-core repulsion = 21589.107236 eV Total energy + Delta-G solvation = -3838.528899 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.34036 -41.19905 -39.61623 -37.82984 -37.50962 -36.25490 -34.68893 -33.61558 -32.20084 -32.00534 -29.08253 -28.69941 -26.73342 -25.03623 -24.52182 -24.06787 -22.26225 -20.98092 -19.19283 -18.63516 -18.63054 -17.74470 -17.60513 -17.01678 -16.77698 -16.58224 -16.33662 -15.91919 -15.73970 -15.25150 -15.04087 -14.49886 -14.46001 -14.31424 -13.84408 -13.66804 -13.44451 -13.33168 -13.15388 -13.09699 -12.82484 -12.71310 -12.65442 -12.39455 -12.37271 -12.11420 -11.90049 -11.80004 -11.67998 -10.97160 -10.63027 -10.29423 -9.95108 -9.90725 -9.65050 -8.15999 -6.23052 -0.27011 -0.15254 0.52888 0.68276 1.26388 1.35017 1.38698 1.46922 2.11473 2.36214 2.50591 2.52752 3.18915 3.21790 3.36281 3.75710 3.79682 3.96654 4.14746 4.23708 4.34587 4.43879 4.51405 4.74794 4.77236 4.82582 4.86198 4.93285 5.00646 5.01794 5.18610 5.25971 5.35321 5.48559 5.54791 5.74116 5.95677 6.09097 6.26975 6.64400 6.66816 6.79720 6.99263 7.42789 8.92383 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.004749 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.857872 B = 5895.098541 C = 7313.784674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.104 3.896 3 N -0.563 5.563 4 C 0.250 3.750 5 C -0.512 4.512 6 H 0.045 0.955 7 C 0.024 3.976 8 N -0.920 5.920 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.273 1.273 12 H -0.289 1.289 13 C 0.507 3.493 14 O -0.554 6.554 15 C 0.487 3.513 16 O -0.460 6.460 17 N -0.640 5.640 18 C 0.206 3.794 19 C -0.182 4.182 20 C 0.159 3.841 21 C -0.098 4.098 22 N -0.509 5.509 23 C 0.187 3.813 24 Cl -0.032 7.032 25 C -0.184 4.184 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.024 0.976 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.436 0.564 35 H 0.187 0.813 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 3.138 15.940 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.017 4.017 3 N -0.293 5.293 4 C 0.130 3.870 5 C -0.551 4.551 6 H 0.064 0.936 7 C -0.175 4.175 8 N -0.560 5.560 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.198 1.198 12 H -0.215 1.215 13 C 0.289 3.711 14 O -0.435 6.435 15 C 0.268 3.732 16 O -0.328 6.328 17 N -0.290 5.290 18 C 0.102 3.898 19 C -0.204 4.204 20 C 0.021 3.979 21 C -0.155 4.155 22 N -0.224 5.224 23 C 0.024 3.976 24 Cl -0.004 7.004 25 C -0.208 4.208 26 H 0.113 0.887 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.277 0.723 35 H 0.204 0.796 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.737 4.152 15.338 15.907 hybrid contribution 0.247 -0.724 -0.950 1.219 sum 0.984 3.428 14.389 14.824 Atomic orbital electron populations 1.22034 0.94065 1.03594 1.01558 1.21712 0.95741 0.80690 1.03605 1.48285 1.59199 1.14746 1.07116 1.19391 0.96266 0.92224 0.79147 1.21355 0.95641 1.32023 1.06061 0.93635 1.25455 1.00439 0.94748 0.96901 1.70004 1.35485 1.34940 1.15610 0.85708 0.81183 0.77481 0.78468 1.19514 1.19823 1.21543 1.19708 0.80248 0.86505 0.84597 1.90653 1.55838 1.66532 1.30495 1.20631 0.80590 0.87746 0.84190 1.91069 1.44300 1.67013 1.30399 1.42991 1.64588 1.11191 1.10268 1.17944 0.93026 0.83580 0.95213 1.22191 0.97927 0.98321 1.01957 1.21707 0.94380 0.88900 0.92917 1.20887 0.96856 1.03104 0.94631 1.66925 1.13303 1.39119 1.03062 1.21310 0.95784 0.88715 0.91789 1.98396 1.90057 1.62601 1.49329 1.21704 1.04492 0.92307 1.02286 0.88707 0.93117 0.93153 0.89724 0.89567 0.95753 0.94492 0.92865 0.72312 0.79598 0.88901 0.89995 0.87100 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 10.24 71.98 0.74 -3.48 16 2 C 0.10 3.40 6.12 86.38 0.53 3.93 16 3 N -0.56 -22.93 2.47 -827.81 -2.04 -24.97 16 4 C 0.25 12.27 4.77 85.63 0.41 12.68 16 5 C -0.51 -27.65 7.72 25.60 0.20 -27.45 16 6 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 7 C 0.02 1.34 5.46 84.65 0.46 1.80 16 8 N -0.92 -53.71 13.29 21.45 0.28 -53.42 16 9 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 C 0.51 19.80 7.68 87.24 0.67 20.47 16 14 O -0.55 -20.66 16.05 -3.30 -0.05 -20.71 16 15 C 0.49 18.82 7.45 87.24 0.65 19.47 16 16 O -0.46 -21.63 9.99 -3.28 -0.03 -21.67 16 17 N -0.64 -18.75 5.33 -304.35 -1.62 -20.37 16 18 C 0.21 5.99 6.29 38.51 0.24 6.23 16 19 C -0.18 -3.87 9.69 22.49 0.22 -3.66 16 20 C 0.16 3.54 6.78 42.45 0.29 3.83 16 21 C -0.10 -1.24 10.17 71.24 0.72 -0.52 16 22 N -0.51 -14.91 10.25 -175.11 -1.79 -16.70 16 23 C 0.19 6.15 7.27 84.63 0.62 6.77 16 24 Cl -0.03 -1.03 29.10 -2.72 -0.08 -1.11 16 25 C -0.18 -6.34 8.49 22.51 0.19 -6.15 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 30 H 0.09 2.66 7.37 -2.39 -0.02 2.64 16 31 H 0.02 1.24 8.03 -2.39 -0.02 1.22 16 32 H 0.04 2.01 5.93 -2.39 -0.01 1.99 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.44 9.97 8.30 -92.71 -0.77 9.20 16 35 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 0.73 8.07 -2.39 -0.02 0.71 16 39 H 0.13 5.20 6.63 -2.91 -0.02 5.18 16 Total: -1.00 -68.61 352.78 2.94 -65.66 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.33 Total: 12.61 kcal Atomic # 6 Polarization: 28.00 SS G_CDS: 5.93 Total: 33.93 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -5.18 Total: -115.47 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.09 Total: -42.37 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -68.61 2.94 -65.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337929186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.784 kcal (2) G-P(sol) polarization free energy of solvation -68.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds